BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644816|ref|NP_206986.1| hypothetical protein
[Helicobacter pylori 26695]
(95 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222895.1| putative [Helicobacter pylori J99] 139 1e-35
ref|NP_224148.1| putative [Helicobacter pylori J99] 38 3e-05
ref|NP_223290.1| putative [Helicobacter pylori J99] 36 2e-04
ref|NP_224019.1| putative [Helicobacter pylori J99] 35 2e-04
ref|NP_223672.1| putative [Helicobacter pylori J99] 33 0.001
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 32 0.003
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 30 0.008
ref|NP_223180.1| putative [Helicobacter pylori J99] 29 0.019
ref|NP_222942.1| putative [Helicobacter pylori J99] 28 0.042
ref|NP_223591.1| putative [Helicobacter pylori J99] 27 0.055
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 0.072
ref|NP_223388.1| putative [Helicobacter pylori J99] 25 0.27
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 0.27
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 24 0.61
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 23 0.79
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobac... 22 1.8
ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRA... 22 2.3
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 22 2.3
ref|NP_223830.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylo... 22 3.0
ref|NP_223730.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223590.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylor... 21 3.9
ref|NP_223583.1| STATIONARY PHASE PROTEIN [Helicobacter pyl... 21 5.2
ref|NP_223580.1| GTP CYCLOHYDROLASE I [Helicobacter pylori ... 21 5.2
ref|NP_222801.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 20 6.7
ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori... 20 6.7
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 20 6.7
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 20 6.7
ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helico... 20 8.8
ref|NP_223655.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223625.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223527.1| catalase [Helicobacter pylori J99] 20 8.8
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 20 8.8
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 20 8.8
ref|NP_223260.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 20 8.8
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 20 8.8
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 20 8.8
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 139 bits (350), Expect = 1e-35
Identities = 73/94 (77%), Positives = 79/94 (83%), Gaps = 2/94 (2%)
Query: 1 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAP 60
MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVL +KQ E+DK+ETRKYLYQKGELKLEVA
Sbjct: 55 MVVAKNEDNKKLYDIIDGQQRTTTIFMLLHVLVSKQYEEDKRETRKYLYQKGELKLEVAS 114
Query: 61 KNQSFFKTLLEAAEKENIS--QKKMQTPRASKIF 92
+NQSFFKTLLE AEK NIS +K T +F
Sbjct: 115 QNQSFFKTLLEVAEKGNISHCEKDADTEGKQNLF 148
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 38.1 bits (87), Expect = 3e-05
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 6 NEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQK 51
+E N + YDI+DGQQR +T +L VLA +KD T + L +K
Sbjct: 73 SETNAETYDIVDGQQRLSTFILLAKVLATLY-DKDLDTTSRELLEK 117
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 35.8 bits (81), Expect = 2e-04
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 7 EDNKKL-----YDIIDGQQRTTTIFMLLHVLANK-QNEKDKQETRKYLYQKGE-LKLEVA 59
+D K L + IIDGQQR TTI +LL + K QNE K+E L G+ L+L+
Sbjct: 65 DDEKSLRQLQEFVIIDGQQRITTIMLLLKAIETKIQNEGIKKEIDGLLNLSGQRLRLKPI 124
Query: 60 PKNQSFFKTLLEAAEKE 76
++ F +++ E
Sbjct: 125 KSDKEAFDLVMQNRSHE 141
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 35.4 bits (80), Expect = 2e-04
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 1 MVVAKNEDNKKLYDIIDGQQRTTTIFML----LHVLANKQNEKDKQETRKYLY-----QK 51
+V+A+N +K+ +D++DGQQR T+ +L L + ++ +K K + +Y +K
Sbjct: 62 IVIAENPKDKR-WDVVDGQQRLTSFIILACTILRLYKHRLGQKSKAFIEESIYDRHDKEK 120
Query: 52 GELKLEVAPKNQSFFK-TLLEAAEKENISQK 81
LK A S F+ T+L+ E E+ +K
Sbjct: 121 ERLKFLTAQNYNSIFENTVLKNLEFEDNIKK 151
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 32.7 bits (73), Expect = 0.001
Identities = 16/36 (44%), Positives = 21/36 (57%)
Query: 5 KNEDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKD 40
+NE ++IIDGQQR T +LL +LA KD
Sbjct: 60 ENELEDSAFEIIDGQQRLATSLILLGLLAKTTKHKD 95
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 31.6 bits (70), Expect = 0.003
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 29 LHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA--EKENISQKKMQTP 86
L ++ +NE +K+E K L + LE A ++ +K + A EKE +K+ TP
Sbjct: 1168 LDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTP 1227
Query: 87 RASKI 91
A K+
Sbjct: 1228 EARKL 1232
Score = 30.0 bits (66), Expect = 0.008
Identities = 19/62 (30%), Positives = 31/62 (49%), Gaps = 2/62 (3%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA--EKENISQKKMQTPRAS 89
++ +NEK+KQE K L + LE + K+ + + A E E +K+ TP A
Sbjct: 842 VSRARNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEAR 901
Query: 90 KI 91
K+
Sbjct: 902 KL 903
Score = 29.6 bits (65), Expect = 0.011
Identities = 19/58 (32%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
Query: 36 QNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA--EKENISQKKMQTPRASKI 91
+NEK+KQE K L + LE + K+ + + A E E +K+ TP A K+
Sbjct: 770 RNEKEKQECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKL 827
Score = 29.3 bits (64), Expect = 0.014
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 LHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA--EKENISQKKMQTP 86
L ++ +NEK+K+E K L + LE + K+ + + A E E +K+ TP
Sbjct: 1130 LDCVSRARNEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTP 1189
Query: 87 RASKI 91
A K+
Sbjct: 1190 EARKL 1194
Score = 29.3 bits (64), Expect = 0.014
Identities = 21/66 (31%), Positives = 33/66 (49%), Gaps = 3/66 (4%)
Query: 32 LANKQNEKDKQETRKYLYQKGE--LKLEVAPKNQSFFKTLLEAA-EKENISQKKMQTPRA 88
++ +NEK+KQE K L + L+ EV +++ + A EKE +K+ TP A
Sbjct: 1209 VSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA 1268
Query: 89 SKIFLK 94
K K
Sbjct: 1269 RKFLEK 1274
Score = 29.3 bits (64), Expect = 0.014
Identities = 20/63 (31%), Positives = 33/63 (51%), Gaps = 3/63 (4%)
Query: 32 LANKQNEKDKQETRKYLYQKGE--LKLEVAPKNQSFFKTLLEAA-EKENISQKKMQTPRA 88
++ +NEK+KQE K L + L+ EV +++ + A EKE +K+ TP A
Sbjct: 1025 VSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA 1084
Query: 89 SKI 91
K+
Sbjct: 1085 RKL 1087
Score = 28.9 bits (63), Expect = 0.019
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 LHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA--EKENISQKKMQTP 86
L ++ + E +K+E K L + + KLE A K+ + + A E E +K+ TP
Sbjct: 618 LDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLLTP 677
Query: 87 RASKI 91
A K+
Sbjct: 678 EAKKL 682
Score = 23.5 bits (49), Expect = 0.79
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 19 QQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSF--FKTLLEAAEKE 76
Q+ ++ L ++ +NEK+KQE K L + LE NQ+ K AEK+
Sbjct: 1051 QEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLE----NQALDCLKNAKTEAEKK 1106
Query: 77 NI-------SQKKMQTPRASKIFL 93
QKK+ + K +L
Sbjct: 1107 RCVKDLPKDLQKKVLAKESVKAYL 1130
Score = 23.1 bits (48), Expect = 1.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLEVAPKNQSF--FKTLLEAAEKENI-------SQKK 82
++ +NEK+KQE K L + + LE NQ+ K AEK+ QKK
Sbjct: 918 VSRARNEKEKQECEKLLTPEAKKLLE----NQALDCLKNAKTEAEKKRCVKDLPKDLQKK 973
Query: 83 MQTPRASKIFL 93
+ + +++L
Sbjct: 974 VLAKESVRVYL 984
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/39 (30%), Positives = 20/39 (50%)
Query: 19 QQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLE 57
Q+ ++ L ++ +NEK+KQE K L + LE
Sbjct: 1235 QEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLE 1273
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLE 57
++ +NEK+KQE K L + + LE
Sbjct: 513 VSRARNEKEKQECEKLLTPEAKKLLE 538
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 30.0 bits (66), Expect = 0.008
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 50 QKGELKLEVAPKNQSFFKTLLEAAEKENISQKKMQTPR 87
Q+ +LKL + P N KT L A+E++NI KK+ TPR
Sbjct: 96 QEMDLKLSIIP-NLVDEKTPLGASEEDNIEIKKILTPR 132
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 28.9 bits (63), Expect = 0.019
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 15 IIDGQQRTTTIFMLLHVL-ANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAA 73
IIDGQQR TTI +L L ++ +E ++E YL + F+ +L +
Sbjct: 75 IIDGQQRLTTITLLCIALRSHLSDEVKREEIESYLINSDK-------DGDKKFRLILSES 127
Query: 74 EKENI 78
+K+ +
Sbjct: 128 DKDTL 132
>ref|NP_222942.1| putative [Helicobacter pylori J99]
Length = 123
Score = 27.7 bits (60), Expect = 0.042
Identities = 15/35 (42%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 39 KDKQETRKYLYQKGELKLEVAPK-NQSFFKTLLEA 72
K +Q+ + Y+KGE K+ APK N FKT +A
Sbjct: 49 KGEQQEITFYYEKGEKKILYAPKINHLDFKTFKDA 83
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 27.3 bits (59), Expect = 0.055
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 12 LYDIIDGQQRTTTIFM-------LLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQS 64
LY ++DGQQR T++++ L A N +E R YL K + ++ N
Sbjct: 108 LYIVLDGQQRLTSLYIGLKGTRTLKKKNARYDNPNAYEEKRLYLNLKHQPNMDNPEDNYE 167
Query: 65 F 65
F
Sbjct: 168 F 168
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.9 bits (58), Expect = 0.072
Identities = 17/79 (21%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 7 EDNKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFF 66
E +K+++ ++ ++ + ++ NK++ +DK+E K + E+K + Q F
Sbjct: 78 EYREKIFECVEEEKHKQALNLI-----NKEDTEDKEELAKKIK---EIKEKAKVLRQKFM 129
Query: 67 KTLLEAAEKENISQKKMQT 85
++ KE ++K++QT
Sbjct: 130 AFEMKEHSKEFPNKKQLQT 148
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 25.0 bits (53), Expect = 0.27
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 23 TTIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTL----LEAAEKENI 78
+T+ L + +Q++ D+QE K LY + N F L +E +EK+ I
Sbjct: 80 STLIECLRMFFKEQSKVDQQERFKRLYSTYQY-------NHQNFILLDVPGIEGSEKKVI 132
Query: 79 SQKKMQTPRASKIFL 93
Q T +A IF+
Sbjct: 133 DQISNATQKAHAIFM 147
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.0 bits (53), Expect = 0.27
Identities = 12/47 (25%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 2 VVAKNED--NKKLYDIIDGQQRTTTIFMLLHVLANKQNEKDKQETRK 46
V+ +N++ N+ + + ++ T + + + + EKDKQET+K
Sbjct: 219 VIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKDKQETKK 265
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 23.9 bits (50), Expect = 0.61
Identities = 20/87 (22%), Positives = 38/87 (42%), Gaps = 21/87 (24%)
Query: 6 NEDNKKLYDIIDGQQRTTTIFMLLHVLANKQN--------EKDKQETRKYLYQKGELKLE 57
N++ + +D++ G Q AN +N +KQ + +K +L+
Sbjct: 144 NKEKPQTFDVLQGSQPMLG--------ANTKNLHGYDVSGANNKQVINEVAREKAQLE-- 193
Query: 58 VAPKNQSFFKTLLEAAEKENISQKKMQ 84
K ++KTLL+ E+E ++K Q
Sbjct: 194 ---KINQYYKTLLQDKEQEYTTRKNNQ 217
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 23.5 bits (49), Expect = 0.79
Identities = 14/44 (31%), Positives = 20/44 (44%)
Query: 39 KDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENISQKK 82
KDK L + L + +AP ++ F K LLE + KK
Sbjct: 10 KDKLLEVAVLKKNHALPINIAPSDRDFKKALLEKKTSFILEYKK 53
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 1.0
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 36 QNE-KDKQETRKYLYQKGELKLE-VAPKNQSFFKTLLEAAEKENISQKKMQ 84
+NE K+ +ET++ +++K E +E PK SF++ + A+ +I K Q
Sbjct: 147 ENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIRRWAKNTSIVTIKKQ 197
>ref|NP_223263.1| 8-amino-7-oxononanoate synthase [Helicobacter pylori J99]
Length = 373
Score = 22.3 bits (46), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (64%)
Query: 47 YLYQKGELKLEVAPKNQSFFKTL 69
++ QK ELK E++ Q F+TL
Sbjct: 272 FIAQKQELKNELSKHQQIIFETL 294
>ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE [Helicobacter
pylori J99]
Length = 277
Score = 21.9 bits (45), Expect = 2.3
Identities = 17/61 (27%), Positives = 33/61 (53%), Gaps = 7/61 (11%)
Query: 24 TIFMLLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKNQ-SFFKTLLEAAEKENISQKK 82
+I+ +++ + K + K+++ + Y L + KN S FKTLLE A + +S K+
Sbjct: 12 SIYEDINIASAKPSLKERKNIKHYALDY----LNIDEKNNASLFKTLLEDAMR--VSSKE 65
Query: 83 M 83
+
Sbjct: 66 I 66
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/47 (27%), Positives = 24/47 (50%), Gaps = 7/47 (14%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENI 78
L NK+N K+ + +++ ++ L++A K L+ KENI
Sbjct: 91 LENKKNHKELRGREEFVRVSWDMALDLAAKK-------LKEIPKENI 130
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 21.6 bits (44), Expect = 3.0
Identities = 16/53 (30%), Positives = 25/53 (46%), Gaps = 3/53 (5%)
Query: 33 ANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENISQKKMQT 85
ANK + +QE +K +K + + E Q KT EK+ Q+K +T
Sbjct: 117 ANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKT---EQEKQKTEQEKQKT 166
>ref|NP_223022.1| ARGINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 541
Score = 21.6 bits (44), Expect = 3.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 32 LANKQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENI 78
LA K++ + T ++ KGE +E+A K + + L +E I
Sbjct: 172 LAYKEHVLKESVTYPEVFYKGEYIIEIAKKAHNDLEPSLFKENEETI 218
>ref|NP_223730.1| putative [Helicobacter pylori J99]
Length = 182
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 28 LLHVLANKQNEKDKQETRKYLYQKGELKLEVAPKN 62
LL+ + K + RKY ++ E K ++ P N
Sbjct: 115 LLYRIFKKDEIHYIHKERKYFMKQNEFKKQLVPMN 149
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 21.2 bits (43), Expect = 3.9
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 30 HVLANKQNEKDKQETRKYL 48
+ L +K NE DK++ K++
Sbjct: 68 YFLKSKMNENDKEQALKFV 86
>ref|NP_222944.1| PROLYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 576
Score = 21.2 bits (43), Expect = 3.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 76 ENISQKKMQTPRASKIFLKF 95
EN++ K+MQ A I + F
Sbjct: 54 ENVTHKRMQEHGAQNILMSF 73
>ref|NP_223583.1| STATIONARY PHASE PROTEIN [Helicobacter pylori J99]
Length = 267
Score = 20.8 bits (42), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Query: 36 QNEKDKQETRK-YLYQKGELKLEVAPKNQSFF 66
Q K ++ T K Y K E+ PKN+S+F
Sbjct: 180 QEYKGERITPKGYRLYKKEVHKRTDPKNESYF 211
>ref|NP_223580.1| GTP CYCLOHYDROLASE I [Helicobacter pylori J99]
Length = 70
Score = 20.8 bits (42), Expect = 5.2
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 35 KQNEKDKQETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENIS 79
K+ K QE K+LY+ + VA K+ F E +NIS
Sbjct: 22 KETPKRVQELWKFLYKGYKEDPRVALKSAYFQGVCDEMIVAQNIS 66
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 20.8 bits (42), Expect = 5.2
Identities = 12/43 (27%), Positives = 22/43 (50%), Gaps = 1/43 (2%)
Query: 53 ELKLEVAPKNQSFFKTLLEAAEKENISQKKMQTPRASKIFLKF 95
E L++ P NQ F ++ EK N + + + A +++ KF
Sbjct: 176 EEALKLKPNNQVFLNFKVKKIEKRNDTYAVI-SEDAEEVYAKF 217
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 46 KYLYQKGELKLEVAPKNQSFFKTLLEAAEKEN 77
K L+ L PK ++ + +LE + EN
Sbjct: 425 KVLFANSNTDLFSTPKPEALLQRILEISTNEN 456
>ref|NP_223797.1| VALYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 872
Score = 20.4 bits (41), Expect = 6.7
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 46 KYLYQKGELKLEVAPKNQSFFKTLLEAAEKENISQKK 82
K LYQ G +A +N + L + +KE++ ++K
Sbjct: 79 KTLYQPGLDHAGIATQNVVEKQLLSQGVKKEDLGREK 115
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 62 NQSFFKTLLEAAEKENI 78
N+++ KT+LEA E I
Sbjct: 232 NENYKKTILEARENPTI 248
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 20.4 bits (41), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 33 ANKQNEKDKQETRKYLYQKGELKLEVAPKN 62
AN++N KD + + Q+ LE+ KN
Sbjct: 150 ANRENFKDILSYKAHFLQETLKSLEIQLKN 179
>ref|NP_223755.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 314
Score = 20.0 bits (40), Expect = 8.8
Identities = 11/43 (25%), Positives = 22/43 (50%)
Query: 14 DIIDGQQRTTTIFMLLHVLANKQNEKDKQETRKYLYQKGELKL 56
D + Q+R +F + ++ +KD E +YL ++ E K+
Sbjct: 272 DYLGAQKRFKHLFKKENEHIIEELQKDVNERWEYLQRREEAKV 314
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 35 KQNEKDKQETRKYLYQKGELKLEVAPKNQSF 65
K+N DKQ T+K + ++ ++ N F
Sbjct: 374 KENHIDKQLTQKRINERERARIYFQNPNVKF 404
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 43 ETRKYLYQKGELKLEVAPKNQSFFKTLLEAAEKENISQKK 82
ET+K +K +++ K+Q + E A K+ + ++K
Sbjct: 248 ETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEK 287
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 49 YQKGELKLEVAPKNQSFFKTLLEAAEK 75
Y K ++ +V K + FF+ A EK
Sbjct: 75 YTKAKIFSKVGKKTECFFRFSTVAGEK 101
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/19 (47%), Positives = 12/19 (62%)
Query: 59 APKNQSFFKTLLEAAEKEN 77
A + S +KTLLE K+N
Sbjct: 420 ADEASSLYKTLLEKLLKQN 438
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 58 VAPKNQSFFKTLLEAAEKENISQ 80
++PK+Q F K L E +++ Q
Sbjct: 41 ISPKHQDFEKLLQELYNAQSLLQ 63
>ref|NP_223260.1| putative [Helicobacter pylori J99]
Length = 490
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 54 LKLEVAPKNQSFFKTLLEAAEKENISQKK 82
LKL PK+ + + LE A+ I +K+
Sbjct: 214 LKLSALPKDNDYEHSPLEIAKILKIGKKE 242
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 60 PKNQSFFKTLLEAAEKENISQKKM 83
PK+++ +L EN+SQ+K+
Sbjct: 106 PKDKNKIHEVLRLMRLENLSQQKI 129
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 36 QNEKDKQETRKYLYQKGELKLEVAPKN 62
QN+ D Q+ K Y K+E KN
Sbjct: 532 QNKADYQQVLKDFYYPFMDKIEAGKKN 558
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/22 (40%), Positives = 13/22 (58%)
Query: 35 KQNEKDKQETRKYLYQKGELKL 56
K+ E+DK +Y Y+K L L
Sbjct: 71 KRLERDKSMALEYAYEKIALDL 92
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.130 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,608
Number of Sequences: 1491
Number of extensions: 4352
Number of successful extensions: 51
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of query: 95
length of database: 494,079
effective HSP length: 71
effective length of query: 24
effective length of database: 388,218
effective search space: 9317232
effective search space used: 9317232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 40 (20.0 bits)