BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644817|ref|NP_206987.1| hypothetical protein
[Helicobacter pylori 26695]
(33 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222895.1| putative [Helicobacter pylori J99] 72 2e-15
ref|NP_223290.1| putative [Helicobacter pylori J99] 32 0.003
ref|NP_224148.1| putative [Helicobacter pylori J99] 30 0.014
ref|NP_223672.1| putative [Helicobacter pylori J99] 29 0.018
ref|NP_224019.1| putative [Helicobacter pylori J99] 27 0.12
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 2.2
ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99] 22 2.9
ref|NP_223591.1| putative [Helicobacter pylori J99] 22 3.7
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 72.0 bits (175), Expect = 2e-15
Identities = 32/33 (96%), Positives = 32/33 (96%)
Query: 1 MKTTIKEIFQAEGYSIPNYQRDYAWKDKNFRDL 33
MKTTIKEIFQ EGYSIPNYQRDYAWKDKNFRDL
Sbjct: 1 MKTTIKEIFQEEGYSIPNYQRDYAWKDKNFRDL 33
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 32.0 bits (71), Expect = 0.003
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 2 KTTIKEIFQAEG--YSIPNYQRDYAWKDKNFRDL 33
++TI + F G +SIP YQR+Y W+++N L
Sbjct: 5 QSTINDFFALTGTIFSIPVYQRNYTWEEENCEKL 38
>ref|NP_224148.1| putative [Helicobacter pylori J99]
Length = 282
Score = 29.6 bits (65), Expect = 0.014
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 14 YSIPNYQRDYAWKDKNFRDL 33
Y IP+YQR Y W +KN L
Sbjct: 24 YQIPDYQRPYQWTEKNCEKL 43
>ref|NP_223672.1| putative [Helicobacter pylori J99]
Length = 217
Score = 29.3 bits (64), Expect = 0.018
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 4 TIKEIFQAEGYSIPNYQRDYAWKDKNFRD 32
T+ + + + IP+YQR YAW+ + ++D
Sbjct: 5 TLDGVVEKGVFEIPSYQRGYAWQVRQWKD 33
>ref|NP_224019.1| putative [Helicobacter pylori J99]
Length = 314
Score = 26.6 bits (57), Expect = 0.12
Identities = 8/12 (66%), Positives = 9/12 (74%)
Query: 14 YSIPNYQRDYAW 25
Y +PNYQR Y W
Sbjct: 22 YQVPNYQRPYVW 33
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 22.3 bits (46), Expect = 2.2
Identities = 9/24 (37%), Positives = 13/24 (53%)
Query: 10 QAEGYSIPNYQRDYAWKDKNFRDL 33
Q + IP YQR Y+W+ + L
Sbjct: 16 QNNQFVIPIYQRVYSWEKEQCEQL 39
>ref|NP_223325.1| RIBONUCLEASE III [Helicobacter pylori J99]
Length = 239
Score = 21.9 bits (45), Expect = 2.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 2 KTTIKEIFQAEGYSIPNYQ 20
KT ++E+ QA+ IP YQ
Sbjct: 170 KTALQELTQAQFCVIPTYQ 188
>ref|NP_223591.1| putative [Helicobacter pylori J99]
Length = 291
Score = 21.6 bits (44), Expect = 3.7
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 14 YSIPNYQRDYAW 25
Y +P+ QR+Y W
Sbjct: 20 YFLPDIQREYVW 31
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,245
Number of Sequences: 1491
Number of extensions: 811
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 33
length of database: 494,079
effective HSP length: 9
effective length of query: 24
effective length of database: 480,660
effective search space: 11535840
effective search space used: 11535840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)