BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644818|ref|NP_206988.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(177 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222896.1| putative [Helicobacter pylori J99] 333 2e-93
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 26 0.53
ref|NP_223644.1| putative [Helicobacter pylori J99] 26 0.70
ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99] 25 1.6
ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylor... 24 2.0
ref|NP_223319.1| putative [Helicobacter pylori J99] 24 2.7
ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Heli... 23 4.5
ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (... 23 4.5
ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99] 23 4.5
ref|NP_223167.1| putative transporter [Helicobacter pylori ... 23 5.9
ref|NP_223043.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_223516.1| putative [Helicobacter pylori J99] 22 7.7
>ref|NP_222896.1| putative [Helicobacter pylori J99]
Length = 177
Score = 333 bits (853), Expect = 2e-93
Identities = 172/177 (97%), Positives = 174/177 (98%)
Query: 1 MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLSHLNTISETDLVLSALG 60
MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLSHL+TISETDLVLSALG
Sbjct: 1 MLEKLIERVLFATRWLLAPLCIAMSLVLVVLGYVFMKELWHMLSHLDTISETDLVLSALG 60
Query: 61 LVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISAIF 120
LVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISAIF
Sbjct: 61 LVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISAIF 120
Query: 121 LLKRYMSLEDVLSSIPKDTPLSHNPIFWQVVIHLVFVCSALLAAVTNNIAFSQNKAH 177
LLKRYMSLEDVLSSIPKDTPLSHNPIFWQVVIHLVFVCSALL AVTNNIAFSQ + H
Sbjct: 121 LLKRYMSLEDVLSSIPKDTPLSHNPIFWQVVIHLVFVCSALLTAVTNNIAFSQKERH 177
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 26.2 bits (56), Expect = 0.53
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 58 ALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSI 113
A G L MAGL+L Y++F+ ++ E T L TD + K S +I
Sbjct: 5 ATGSGKTLVMAGLILECYKQGYQNFIFFVNSASILEKTKLNFTDSVSSKYLFSENI 60
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 25.8 bits (55), Expect = 0.70
Identities = 14/39 (35%), Positives = 19/39 (47%)
Query: 70 LVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLK 108
L+L L S ++ S +DK D + W H N KLK
Sbjct: 276 LILEQQLLSATNYYSWIDKDDNANFAWKMHRLINENKLK 314
>ref|NP_224156.1| DNA POLYMERASE III [Helicobacter pylori J99]
Length = 323
Score = 24.6 bits (52), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (50%)
Query: 64 LLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLS 112
++F+ ++ LL +Y + L K + I LKH D N L+ SLS
Sbjct: 20 VIFLNPKIVSWLLKAYRMSDNLLHKDIQALIARLKHQDLNLSALEKSLS 68
>ref|NP_223984.1| URACIL-DNA GLYCOSYLASE [Helicobacter pylori J99]
Length = 233
Score = 24.3 bits (51), Expect = 2.0
Identities = 15/53 (28%), Positives = 25/53 (46%), Gaps = 5/53 (9%)
Query: 123 KRYMSLEDVLSSIPKDTPLSHNPIFW-----QVVIHLVFVCSALLAAVTNNIA 170
KR M L + + S+ K+ SH I W Q++I L + L+ + +A
Sbjct: 129 KRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVA 181
>ref|NP_223319.1| putative [Helicobacter pylori J99]
Length = 353
Score = 23.9 bits (50), Expect = 2.7
Identities = 22/81 (27%), Positives = 39/81 (47%), Gaps = 6/81 (7%)
Query: 56 LSALGLVDLLFMAGLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVA 115
L A+G +LF G+ + + YE+ VS + A + + F+A+++ I
Sbjct: 84 LLAIGGTQILFQGGVHPQLKIDYYENLVSHI----AQKFPTITIHGFSAVEIDYISKISK 139
Query: 116 ISAIFLLKRYMSLEDVLSSIP 136
+S +L+R + LSSIP
Sbjct: 140 LSLKEVLERLKNAG--LSSIP 158
>ref|NP_223321.1| GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 23.1 bits (48), Expect = 4.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Query: 70 LVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISA 118
LV LLA Y + L + +TWL LK +V+L ISA
Sbjct: 319 LVSDPLLAEYFESMLNLGVKAKTSVTWLCVELLGRLKAEVTLENCGISA 367
>ref|NP_223151.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 309
Score = 23.1 bits (48), Expect = 4.5
Identities = 17/44 (38%), Positives = 19/44 (42%), Gaps = 14/44 (31%)
Query: 95 TWLKHTDFNALKLKVSLSIVAISAIFLLKRYMSLEDVLSSIPKD 138
T LK DFNA LKV S S E+VL + P D
Sbjct: 173 TLLKIKDFNAPSLKVECS--------------SFEEVLIAYPND 202
>ref|NP_222972.1| DIHYDROOROTASE [Helicobacter pylori J99]
Length = 378
Score = 23.1 bits (48), Expect = 4.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 107 LKVSLSIVAISAIFLLKRYMSLEDVLSSIPKDTPLSH 143
L++ + + +++I LK + D+ + + TPLSH
Sbjct: 180 LQIPVLLDKVNSIATLKLIKAFNDLGAKLQAQTPLSH 216
>ref|NP_223167.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 22.7 bits (47), Expect = 5.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 60 GLVDLLFMAGLVLMVLL-ASYESFVSKLDKVDASEITWL 97
GLV L+F+ G+VL+ L Y+ +++ +K S WL
Sbjct: 341 GLVALIFVVGVVLIFSLHKDYKDYLTFFEK---SLFDWL 376
>ref|NP_223043.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.7 bits (47), Expect = 5.9
Identities = 12/59 (20%), Positives = 29/59 (48%)
Query: 69 GLVLMVLLASYESFVSKLDKVDASEITWLKHTDFNALKLKVSLSIVAISAIFLLKRYMS 127
G+ ++ + +E+ + L + A I WL H+ + +SL++ I L+ +++
Sbjct: 104 GVWFVLSVVIFEALLESLKHLLAHSIQWLSHSANFPSTIALSLALFYGLLILLIPHFIA 162
>ref|NP_223516.1| putative [Helicobacter pylori J99]
Length = 218
Score = 22.3 bits (46), Expect = 7.7
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 106 KLKVSLSIVAISA-----IFLLKRYMSLEDVLSSIPKDTPLSHNPI 146
K SLS + +S+ I +LK Y LED+ + K T L I
Sbjct: 169 KAHQSLSTIPLSSSLYAIISVLKHYGMLEDIQQNPSKPTNLKKETI 214
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.138 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,051
Number of Sequences: 1491
Number of extensions: 6049
Number of successful extensions: 32
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 13
length of query: 177
length of database: 494,079
effective HSP length: 72
effective length of query: 105
effective length of database: 386,727
effective search space: 40606335
effective search space used: 40606335
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)