BLAST Search Results

BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644827|ref|NP_206997.1| nucleoside diphosphate
kinase (ndk) [Helicobacter pylori 26695]
         (137 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222905.1|  NUCLEOSIDE DIPHOSPHATE KINASE [Helicobacte...   263  1e-72
ref|NP_223421.1|  putative [Helicobacter pylori J99]               25  0.60
ref|NP_224141.1|  TYPE I RESTRICTION ENZYME (MODIFICATION SU...    25  1.0
ref|NP_224182.1|  PENICILLIN-BINDING PROTEIN [Helicobacter p...    24  1.7
ref|NP_224161.1|  putative TRANSCRIPTIONAL REGULATOR [Helico...    23  2.3
ref|NP_224001.1|  putative TRANSCRIPTIONAL REGULATOR [Helico...    23  2.3
ref|NP_223660.1|  putative [Helicobacter pylori J99]               23  3.0
ref|NP_224019.1|  putative [Helicobacter pylori J99]               23  3.9
ref|NP_223276.1|  DNA LIGASE [Helicobacter pylori J99]             22  6.6

>ref|NP_222905.1| NUCLEOSIDE DIPHOSPHATE KINASE [Helicobacter pylori J99]
          Length = 137

 Score =  263 bits (673), Expect = 1e-72
 Identities = 134/136 (98%), Positives = 136/136 (99%)

Query: 1   MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFK 60
           MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFK
Sbjct: 1   MKQRTLSIIKPDALKKKVVGKIIDRFESNGLEVVAMKRLHLSVKDAENFYAIHRERPFFK 60

Query: 61  DLIEFMVSGPVVVMVLEGKDAVAKNRDLMGATDPKLAQKGTIRADFAESIDANAVHGSDS 120
           DLIEFMVSGPVVVMVLEGKDAVAKNR+LMGATDPKLAQKGTIRADFAESIDANAVHGSDS
Sbjct: 61  DLIEFMVSGPVVVMVLEGKDAVAKNRELMGATDPKLAQKGTIRADFAESIDANAVHGSDS 120

Query: 121 LENAHNEIAFFFAARD 136
           LENAHNEIAFFFAAR+
Sbjct: 121 LENAHNEIAFFFAARE 136



>ref|NP_223421.1| putative [Helicobacter pylori J99]
          Length = 286

 Score = 25.4 bits (54), Expect = 0.60
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 82  VAKNRDLMGATDPKLAQKGTIRADFAESIDAN 113
           + ++ DL+ A+D    QK  + A+  +SID N
Sbjct: 59  IYRHEDLIDASDLPREQKKAVHAELQKSIDEN 90



>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 815

 Score = 24.6 bits (52), Expect = 1.0
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 36  MKRLHLSVKDAENFYAIHRERPFFKDLI----EFMVSGPVVVMVLEGKDAVAKNRDLMGA 91
           +K       D E +YA+  E    KDLI    E+      V+   E  D      DL   
Sbjct: 485 LKNTLFKKSDKEGYYALKTECENIKDLITQSLEYQTFHASVLSAFESLDLFTTFNDLEPG 544

Query: 92  TDPK 95
            +PK
Sbjct: 545 FNPK 548



>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
          Length = 613

 Score = 23.9 bits (50), Expect = 1.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 47  ENFYAIHRERPFFKDLIEFMVSGPVVVMVLEGKDAVAKNR 86
           E +YA     P FK++ E +V    +   +  ++A+ KNR
Sbjct: 572 EEYYASKIAAPIFKEITEILVRYNYLSPSIAIQNALEKNR 611



>ref|NP_224161.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 213

 Score = 23.5 bits (49), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (59%)

Query: 64  EFMVSGPVVVMVLEGKDAVAKNRDLMGATD 93
           +F++S PV+ +     +A  KN   +GA+D
Sbjct: 71  DFLISTPVIFITALQDNATLKNAFNLGASD 100



>ref|NP_224001.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
          Length = 213

 Score = 23.5 bits (49), Expect = 2.3
 Identities = 10/30 (33%), Positives = 18/30 (59%)

Query: 64  EFMVSGPVVVMVLEGKDAVAKNRDLMGATD 93
           +F++S PV+ +     +A  KN   +GA+D
Sbjct: 71  DFLISTPVIFITALQDNATLKNAFNLGASD 100



>ref|NP_223660.1| putative [Helicobacter pylori J99]
          Length = 61

 Score = 23.1 bits (48), Expect = 3.0
 Identities = 10/26 (38%), Positives = 17/26 (64%)

Query: 1  MKQRTLSIIKPDALKKKVVGKIIDRF 26
          +K+R  SIIK D L ++ +  ++ RF
Sbjct: 26 VKKRKNSIIKRDKLTERAIRLVVARF 51



>ref|NP_224019.1| putative [Helicobacter pylori J99]
          Length = 314

 Score = 22.7 bits (47), Expect = 3.9
 Identities = 11/29 (37%), Positives = 19/29 (64%), Gaps = 1/29 (3%)

Query: 34 VAMKRLHLSVKDAENFYAI-HRERPFFKD 61
          V +K+L+  + DAE FY + + +RP+  D
Sbjct: 6  VELKKLYQILVDAEYFYQVPNYQRPYVWD 34



>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
          Length = 656

 Score = 21.9 bits (45), Expect = 6.6
 Identities = 10/39 (25%), Positives = 24/39 (60%), Gaps = 2/39 (5%)

Query: 29  NGLEVVAMKRLHLSVKDAENFYAIHRERPFFKDLIEFMV 67
           + ++ +++ + H  ++  EN++ + RER  F  L++ MV
Sbjct: 244 SAIQYLSLNKNHQEIE--ENYHTLIREREGFFALLDGMV 280



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.321    0.137    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,663
Number of Sequences: 1491
Number of extensions: 5184
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 137
length of database: 494,079
effective HSP length: 69
effective length of query: 68
effective length of database: 391,200
effective search space: 26601600
effective search space used: 26601600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)