BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644828|ref|NP_206998.1| hypothetical protein
[Helicobacter pylori 26695]
(118 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222906.1| putative [Helicobacter pylori J99] 228 3e-62
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 25 0.77
ref|NP_223822.1| PHOSPHOPENTOMUTASE [Helicobacter pylori J99] 23 2.2
ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synt... 23 2.9
ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicoba... 22 5.0
ref|NP_223177.1| putative Glycolate oxidase [Helicobacter p... 22 6.5
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 22 6.5
ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99] 22 6.5
ref|NP_223280.1| putative lipopolysaccharide biosynthesis p... 21 8.5
ref|NP_223272.1| putative efflux transporter [Helicobacter ... 21 8.5
>ref|NP_222906.1| putative [Helicobacter pylori J99]
Length = 118
Score = 228 bits (582), Expect = 3e-62
Identities = 115/118 (97%), Positives = 117/118 (98%)
Query: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFRLEACLKGELMLICDTSGKEFKK 60
MQFEMRKIAFNAPKAFSLEHEGVVLEGE+VRVGAKLFRL+A LKGELMLICDTSGKEFKK
Sbjct: 1 MQFEMRKIAFNAPKAFSLEHEGVVLEGEIVRVGAKLFRLKARLKGELMLICDTSGKEFKK 60
Query: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD
Sbjct: 61 SLDESLVLHISDGLWDTQSQSLDFDNLDVIESFNGFIDLSEILRSEVESIKLDYHYAD 118
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 24.6 bits (52), Expect = 0.77
Identities = 14/49 (28%), Positives = 26/49 (52%), Gaps = 7/49 (14%)
Query: 68 LHISDGLWDTQSQSLDFDN-----LDVIESFNGFIDLSEILRSEVESIK 111
+ I+DG++D ++Q+ F N L + ESF + + S++ IK
Sbjct: 1542 MRINDGIYDAKNQTYSFTNPLNNALKITESFKN--NQLSVTLSQIPGIK 1588
Score = 21.9 bits (45), Expect = 5.0
Identities = 15/48 (31%), Positives = 25/48 (51%), Gaps = 1/48 (2%)
Query: 69 HISDGLWDTQSQSLDFDNLDVIESF-NGFIDLSEILRSEVESIKLDYH 115
++S GL+ Q++S+ FDN ++ S I + I S+ SI H
Sbjct: 1300 NLSSGLYQMQAKSVLFDNSNLSVSVGTSSIKANAINLSQNASINASNH 1347
>ref|NP_223822.1| PHOSPHOPENTOMUTASE [Helicobacter pylori J99]
Length = 413
Score = 23.1 bits (48), Expect = 2.2
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 14 KAFSLEHEGVVLE-GEVVRVGAKLFRLEACLKGELMLICDTSGKEFKKSLDESLV 67
+ F E +G V+ G++ + A + + G LM +CD + + K + + SL+
Sbjct: 244 ETFIEEKQGEVISIGKIADIYAHVGITQKFKAGSLMELCDVTLDQVKNAPNNSLI 298
>ref|NP_223510.1| putative ADP-D-glycero-D-mannoheptose synthase [Helicobacter pylori
J99]
Length = 463
Score = 22.7 bits (47), Expect = 2.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 44 KGELMLICDTSGKEFKKSLDESLV 67
K +++CD GK++ K SL+
Sbjct: 165 KHHKLILCDPKGKDYSKYSHASLI 188
>ref|NP_224045.1| FORMYLTETRAHYDROFOLATE HYDROLASE [Helicobacter pylori J99]
Length = 293
Score = 21.9 bits (45), Expect = 5.0
Identities = 11/23 (47%), Positives = 12/23 (51%)
Query: 95 GFIDLSEILRSEVESIKLDYHYA 117
G I EILR VE + Y YA
Sbjct: 125 GVISNHEILRPLVEKFDIPYFYA 147
>ref|NP_223177.1| putative Glycolate oxidase [Helicobacter pylori J99]
Length = 459
Score = 21.6 bits (44), Expect = 6.5
Identities = 9/34 (26%), Positives = 16/34 (46%)
Query: 5 MRKIAFNAPKAFSLEHEGVVLEGEVVRVGAKLFR 38
MR + K + + V+ GE++R G K +
Sbjct: 152 MRAAKYGITKDYVMALRVVLANGEIIRAGKKTIK 185
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 21.6 bits (44), Expect = 6.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 41 ACLKGELMLICDTSGKEFKKSLDESLVL 68
A +GEL I T+ KE++K ++ + L
Sbjct: 299 ALARGELHTIGATTLKEYRKYFEKDMAL 326
>ref|NP_222862.1| RECA PROTEIN. [Helicobacter pylori J99]
Length = 347
Score = 21.6 bits (44), Expect = 6.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 21 EGVVLEGEVVRVGAKL 36
EG+ EGE++ G KL
Sbjct: 268 EGISKEGEIIDYGVKL 283
>ref|NP_223280.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 332
Score = 21.2 bits (43), Expect = 8.5
Identities = 8/27 (29%), Positives = 12/27 (43%)
Query: 84 FDNLDVIESFNGFIDLSEILRSEVESI 110
F N ++E F F D+S L +
Sbjct: 158 FKNNPILEKFKKFFDVSRFLNLSTHKV 184
>ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
Length = 1028
Score = 21.2 bits (43), Expect = 8.5
Identities = 6/18 (33%), Positives = 12/18 (66%)
Query: 96 FIDLSEILRSEVESIKLD 113
F+D + +R+ +E +K D
Sbjct: 311 FLDTTSYIRTSIEDVKFD 328
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,284
Number of Sequences: 1491
Number of extensions: 4227
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 11
length of query: 118
length of database: 494,079
effective HSP length: 67
effective length of query: 51
effective length of database: 394,182
effective search space: 20103282
effective search space used: 20103282
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)