BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644829|ref|NP_206999.1| ribosomal protein L32
(rpl32) [Helicobacter pylori 26695]
         (48 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222907.1|  50S RIBOSOMAL PROTEIN L32 [Helicobacter py...   102  1e-24
ref|NP_223319.1|  putative [Helicobacter pylori J99]               22  3.6
ref|NP_223531.1|  putative [Helicobacter pylori J99]               21  6.1
ref|NP_223322.1|  putative [Helicobacter pylori J99]               20  7.9

>ref|NP_222907.1| 50S RIBOSOMAL PROTEIN L32 [Helicobacter pylori J99]
          Length = 48

 Score =  102 bits (255), Expect = 1e-24
 Identities = 47/48 (97%), Positives = 48/48 (99%)

Query: 1  MAVPDRRVSKTRAAKRRTHYSVKLAKPIKAKDGTWKLPHHINKFTKEY 48
          MAVPDRRVSKTRAAKRRTHYSVKLAKP+KAKDGTWKLPHHINKFTKEY
Sbjct: 1  MAVPDRRVSKTRAAKRRTHYSVKLAKPVKAKDGTWKLPHHINKFTKEY 48



>ref|NP_223319.1| putative [Helicobacter pylori J99]
          Length = 353

 Score = 21.6 bits (44), Expect = 3.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 13  AAKRRTHYSVKLAKPIKAK 31
           AAKR T Y +    P KAK
Sbjct: 334 AAKRNTAYEILKRYPAKAK 352



>ref|NP_223531.1| putative [Helicobacter pylori J99]
          Length = 155

 Score = 20.8 bits (42), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 26  KPIKAKDGTWKLPHHINKFTKE 47
           KP+ +++   K    +N+FTKE
Sbjct: 122 KPLTSQEVLLKQQESLNEFTKE 143



>ref|NP_223322.1| putative [Helicobacter pylori J99]
          Length = 413

 Score = 20.4 bits (41), Expect = 7.9
 Identities = 8/31 (25%), Positives = 16/31 (50%)

Query: 2  AVPDRRVSKTRAAKRRTHYSVKLAKPIKAKD 32
          A PD +V      K+ +    K+ + +K+K+
Sbjct: 20 AEPDSKVEALEGRKQESSLDKKIRQELKSKE 50



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.130    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,077
Number of Sequences: 1491
Number of extensions: 925
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 48
length of database: 494,079
effective HSP length: 24
effective length of query: 24
effective length of database: 458,295
effective search space: 10999080
effective search space used: 10999080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)