BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644636|ref|NP_206804.1| riboflavin synthase beta
chain (ribE) [Helicobacter pylori 26695]
(156 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobact... 294 7e-82
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 27 0.19
ref|NP_222870.1| putative [Helicobacter pylori J99] 26 0.57
ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [... 24 2.2
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 23 3.7
ref|NP_222916.1| putative Outer membrane protein [Helicobac... 23 3.7
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 6.3
ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [... 22 6.3
ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERA... 22 8.2
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 22 8.2
>ref|NP_222724.1| RIBOFLAVIN SYNTHASE BETA CHAIN [Helicobacter pylori J99]
Length = 156
Score = 294 bits (753), Expect = 7e-82
Identities = 147/155 (94%), Positives = 152/155 (97%)
Query: 1 MQIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYEL 60
MQIIEGKLQLQGNE++AILTSRFNHIITDRL+EGAMDCFKRHGGDE+LLD+VLVPGAYEL
Sbjct: 1 MQIIEGKLQLQGNEKIAILTSRFNHIITDRLKEGAMDCFKRHGGDEELLDLVLVPGAYEL 60
Query: 61 PFILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEATKGIAHAMLKYSMPVSFGVLTTD 120
P ILDKLLES KYDGVCVLGAIIRGGTPHFDYVSAEATKGIA AMLKYSMPVSFGVLTTD
Sbjct: 61 PLILDKLLESGKYDGVCVLGAIIRGGTPHFDYVSAEATKGIASAMLKYSMPVSFGVLTTD 120
Query: 121 NIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLK 155
NIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLK
Sbjct: 121 NIEQAIERAGSKAGNKGFEAMSTLIELLSLCQTLK 155
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 27.3 bits (59), Expect = 0.19
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 17/105 (16%)
Query: 47 DLLDIVLVPGAYELP--------FILDKLLESEKYDGVCVLGAIIRGGTPHFDYVSAEAT 98
++ ++V+V G+ +P FI +L +S D V +GA I+GG D
Sbjct: 327 EISEVVMVGGSTRIPKVQERVKAFINKELNKSVNPDEVVAVGASIQGGVLKGD------- 379
Query: 99 KGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAGNKGFEAMST 143
+ +L P+S G+ T + + G+ K + ST
Sbjct: 380 --VKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFST 422
>ref|NP_222870.1| putative [Helicobacter pylori J99]
Length = 240
Score = 25.8 bits (55), Expect = 0.57
Identities = 11/16 (68%), Positives = 13/16 (80%)
Query: 120 DNIEQAIERAGSKAGN 135
DNI+ AI+RA SK GN
Sbjct: 62 DNIDAAIKRASSKEGN 77
>ref|NP_223571.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
Length = 1085
Score = 23.9 bits (50), Expect = 2.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 102 AHAMLKYSMPVSFGVLTTDNIEQAIERAGSKA 133
A ++K + + F + TT+ +A+E+AG K+
Sbjct: 972 ACVLMKRLVELGFELCTTEGTHKALEKAGVKS 1003
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 23.1 bits (48), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 46 EDLLDIVLVPGAYELPFILDKLLESEKYDGV 76
E L D + YE ++DK +E E+ D V
Sbjct: 198 ESLFDFLSDEIPYESDVMIDKFIEEERIDKV 228
>ref|NP_222916.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 438
Score = 23.1 bits (48), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 99 KGIAHAMLKYSMPVSFGVLTTDNIEQAIERAGSKAG 134
KGI + L + + G L D+ + I+ A KAG
Sbjct: 58 KGIENHKLGFGVGGEIGALAYDSTKFLIDEANPKAG 93
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 22.3 bits (46), Expect = 6.3
Identities = 16/60 (26%), Positives = 30/60 (49%), Gaps = 2/60 (3%)
Query: 2 QIIEGKLQLQGNERVAILTSRFNHIITDRLQEGAMDCFKRHGGDEDLLDIVLVPGAYELP 61
Q + L G E + + ++ N + + L + AM+ K+ GG + ++ L P + ELP
Sbjct: 1402 QATDNIFNLLGQEGIDKIFNQGN--LANVLSQMAMEKIKQAGGLGNFIENALSPLSKELP 1459
>ref|NP_222762.1| HYDROGENASE EXPRESSION/FORMATION PROTEIN [Helicobacter pylori J99]
Length = 332
Score = 22.3 bits (46), Expect = 6.3
Identities = 11/37 (29%), Positives = 16/37 (42%)
Query: 52 VLVPGAYELPFILDKLLESEKYDGVCVLGAIIRGGTP 88
VL + P L+ L +EK CV+G + P
Sbjct: 270 VLALNQKDAPKALEILKSNEKAKNACVIGGVFENPYP 306
>ref|NP_223309.1| UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE [Helicobacter pylori
J99]
Length = 273
Score = 21.9 bits (45), Expect = 8.2
Identities = 11/36 (30%), Positives = 18/36 (49%), Gaps = 3/36 (8%)
Query: 90 FDYVSAEATKGIAHAMLKYSMPVS---FGVLTTDNI 122
F YV + KG+ HA+L + F V+ D++
Sbjct: 97 FSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDL 132
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 21.9 bits (45), Expect = 8.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 29 DRLQEGAMDCFKRHGGDED 47
+RL++ A+DC K DE+
Sbjct: 466 ERLKQQALDCLKNAKTDEE 484
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.140 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,826
Number of Sequences: 1491
Number of extensions: 6245
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 156
length of database: 494,079
effective HSP length: 71
effective length of query: 85
effective length of database: 388,218
effective search space: 32998530
effective search space used: 32998530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)