BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644833|ref|NP_207003.1| hypothetical protein
[Helicobacter pylori 26695]
(127 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222911.1| putative [Helicobacter pylori J99] 255 2e-70
ref|NP_223014.1| putative [Helicobacter pylori J99] 30 0.016
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 27 0.14
ref|NP_223158.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_223337.1| putative [Helicobacter pylori J99] 23 2.0
ref|NP_223471.1| putative [Helicobacter pylori J99] 23 2.6
ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylor... 22 4.4
ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE ... 22 4.4
ref|NP_223822.1| PHOSPHOPENTOMUTASE [Helicobacter pylori J99] 22 5.7
ref|NP_223702.1| putative [Helicobacter pylori J99] 22 5.7
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 21 9.8
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 21 9.8
>ref|NP_222911.1| putative [Helicobacter pylori J99]
Length = 127
Score = 255 bits (652), Expect = 2e-70
Identities = 125/127 (98%), Positives = 125/127 (98%)
Query: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNL 60
MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGK MGKMTDSSLLSITSMNDEPVVIKNL
Sbjct: 1 MFKKMCLSLLMISGVCVGAKDLDFKLDYRATGGKFMGKMTDSSLLSITSMNDEPVVIKNL 60
Query: 61 IVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
IVNRGNSCEATKKVEPK GDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE
Sbjct: 61 IVNRGNSCEATKKVEPKFGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
Query: 121 YYHKFSK 127
YYHKFSK
Sbjct: 121 YYHKFSK 127
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 30.4 bits (67), Expect = 0.016
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 10 LMISGVCVGAKDLDFKLDYRAT--GGKLMGKMTDSSLLSITSMNDEPVVIKNLIVNRGNS 67
L SG CV KD DF LD++A G + + T +L +D +V ++ N
Sbjct: 52 LFDSGYCVNDKDADFGLDFKAIEHGEETLKNETLRALSDFAKSSDTHIVACSIEKNNKKL 111
Query: 68 CEATKKVEPK 77
++ + PK
Sbjct: 112 YDSAYIIPPK 121
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 27.3 bits (59), Expect = 0.14
Identities = 23/62 (37%), Positives = 31/62 (49%), Gaps = 9/62 (14%)
Query: 45 LSITSMNDEPVVIKNLIVNRGNSCEATKKVEPKLGDKFK---KEKLFDHELKY-SQQIFY 100
L S +E + KN++ NS +A K VEPKL +K K K L H Y + +FY
Sbjct: 414 LGTISKEEERIQAKNML----NSVKAMK-VEPKLHEKIKRLSKRYLHGHGFFYIGRDVFY 468
Query: 101 RL 102
L
Sbjct: 469 PL 470
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 24.3 bits (51), Expect = 1.2
Identities = 23/101 (22%), Positives = 42/101 (40%), Gaps = 13/101 (12%)
Query: 17 VGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKN-------LIVNRGNSCE 69
V AKDL K + G + M + + SI D + + +I++ G
Sbjct: 319 VKAKDL--KPSFTTGGTQKRTDMNEEQIKSIAENFDPKKIFGSGGFEDLPIILHDGQVIA 376
Query: 70 ATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLL 110
++ L K +++ +K +YR+D KP++LL
Sbjct: 377 GNHRIAGMLNFTPKSRYIYNKAIKE----YYRIDLKPDELL 413
>ref|NP_223337.1| putative [Helicobacter pylori J99]
Length = 255
Score = 23.5 bits (49), Expect = 2.0
Identities = 18/59 (30%), Positives = 25/59 (41%)
Query: 4 KMCLSLLMISGVCVGAKDLDFKLDYRATGGKLMGKMTDSSLLSITSMNDEPVVIKNLIV 62
+M LS + S + K LDF L G L+G +L I S V+ L+V
Sbjct: 50 QMVLSSFVGSVLNFKKKSLDFSLGLLIGAGGLIGASFSGFILKIVSSKILMVIFALLVV 108
>ref|NP_223471.1| putative [Helicobacter pylori J99]
Length = 148
Score = 23.1 bits (48), Expect = 2.6
Identities = 20/73 (27%), Positives = 33/73 (44%), Gaps = 14/73 (19%)
Query: 53 EPVVIKNLIVNRGNSCEATKKVEPKLGDKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEV 112
E VVI + +N+G SC PK L +Q + Y + C+ NQ L +
Sbjct: 90 ESVVILKIDINQGRSCSLYP--TPK-----------SVSLVRNQSVAYEILCE-NQPLWI 135
Query: 113 KIITDKGEYYHKF 125
++ T+ G+ +F
Sbjct: 136 EVSTNLGKRTFQF 148
>ref|NP_223992.1| QUINOLINATE SYNTHETASE [Helicobacter pylori J99]
Length = 336
Score = 22.3 bits (46), Expect = 4.4
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 86 KLFDHELKYSQQIFYRLD 103
K+F+H LK +++IF+ D
Sbjct: 143 KIFNHALKQNKKIFFLPD 160
>ref|NP_223628.1| ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE
[Helicobacter pylori J99]
Length = 439
Score = 22.3 bits (46), Expect = 4.4
Identities = 11/38 (28%), Positives = 20/38 (51%)
Query: 80 DKFKKEKLFDHELKYSQQIFYRLDCKPNQLLEVKIITD 117
D F+KE + + S+ IF L L+E ++++D
Sbjct: 327 DIFEKENVIEKNKALSEFIFSALQNALKPLIERQVVSD 364
>ref|NP_223822.1| PHOSPHOPENTOMUTASE [Helicobacter pylori J99]
Length = 413
Score = 21.9 bits (45), Expect = 5.7
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 89 DHELKYSQQIFYRLDCKPNQLLEVKIITDKGE 120
DH +Y +FY D +P L + + D G+
Sbjct: 358 DHTREYIPVLFYHKDLQPAFLGKSETFADIGQ 389
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 21.9 bits (45), Expect = 5.7
Identities = 11/37 (29%), Positives = 16/37 (42%)
Query: 91 ELKYSQQIFYRLDCKPNQLLEVKIITDKGEYYHKFSK 127
+L+ Q F D N +KI+ D + H F K
Sbjct: 85 DLQQRMQAFLHFDAPKNFTESLKILKDLWDLRHVFPK 121
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 21.2 bits (43), Expect = 9.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 90 HELKYSQQIFYRLDCKPNQLLEVKIITDKGEYYH 123
H LK IF+ L+ +P + II++ G Y H
Sbjct: 186 HTLK--TDIFHTLELRPLLPKDAIIISESGIYSH 217
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 21.2 bits (43), Expect = 9.8
Identities = 7/26 (26%), Positives = 18/26 (68%)
Query: 41 DSSLLSITSMNDEPVVIKNLIVNRGN 66
D ++LSI+++N+ +++ ++ GN
Sbjct: 796 DKTILSISAINEMSMILGLFMLTAGN 821
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,527
Number of Sequences: 1491
Number of extensions: 5537
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 13
length of query: 127
length of database: 494,079
effective HSP length: 68
effective length of query: 59
effective length of database: 392,691
effective search space: 23168769
effective search space used: 23168769
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)