BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644834|ref|NP_207004.1| hypothetical protein
[Helicobacter pylori 26695]
(793 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222912.1| putative [Helicobacter pylori J99] 1004 0.0
ref|NP_223415.1| putative [Helicobacter pylori J99] 38 0.001
ref|NP_222888.1| abc transporter, ATP-binding protein [Heli... 33 0.037
ref|NP_222772.1| putative [Helicobacter pylori J99] 32 0.048
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 32 0.062
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 32 0.081
ref|NP_222783.1| putative [Helicobacter pylori J99] 31 0.11
ref|NP_223787.1| putative [Helicobacter pylori J99] 30 0.18
ref|NP_223476.1| osmoprotection ATP-binding protein [Helico... 30 0.18
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 30 0.24
ref|NP_223020.1| putative abc transporter, ATP-binding prot... 30 0.24
ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANS... 30 0.24
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.31
ref|NP_223384.1| putative [Helicobacter pylori J99] 30 0.31
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 28 0.90
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 28 0.90
ref|NP_222962.1| putative [Helicobacter pylori J99] 28 0.90
ref|NP_222739.1| putative chemotaxis protein [Helicobacter ... 28 0.90
ref|NP_223399.1| putative [Helicobacter pylori J99] 28 1.2
ref|NP_223203.1| cag island protein [Helicobacter pylori J99] 28 1.2
ref|NP_222956.1| ABC transporter, ATP-binding protein [Heli... 28 1.2
ref|NP_223646.1| putative [Helicobacter pylori J99] 27 1.5
ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-B... 27 1.5
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 27 1.5
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 27 1.5
ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter py... 27 1.5
ref|NP_223656.1| putative [Helicobacter pylori J99] 27 2.0
ref|NP_224174.1| putative [Helicobacter pylori J99] 27 2.6
ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN ... 27 2.6
ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEI... 27 2.6
ref|NP_224149.1| putative [Helicobacter pylori J99] 26 3.4
ref|NP_223180.1| putative [Helicobacter pylori J99] 26 3.4
ref|NP_222886.1| putative [Helicobacter pylori J99] 26 3.4
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 26 4.5
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 26 4.5
ref|NP_223386.1| putative [Helicobacter pylori J99] 25 5.8
ref|NP_223357.1| putative [Helicobacter pylori J99] 25 5.8
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 25 5.8
ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobac... 25 5.8
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 25 5.8
ref|NP_224145.1| arginase [Helicobacter pylori J99] 25 7.6
ref|NP_223715.1| putative [Helicobacter pylori J99] 25 7.6
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 25 7.6
ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helic... 25 7.6
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 25 7.6
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 25 7.6
ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99] 25 7.6
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 25 7.6
ref|NP_222979.1| putative [Helicobacter pylori J99] 25 7.6
ref|NP_224134.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 25 10.0
ref|NP_223686.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223590.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223520.1| putative [Helicobacter pylori J99] 25 10.0
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 25 10.0
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 25 10.0
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 1004 bits (2597), Expect = 0.0
Identities = 532/846 (62%), Positives = 621/846 (72%), Gaps = 98/846 (11%)
Query: 1 MSELVTEYANATNNLLFKELIKHVSGNSEGIKNFCQCVKEIKKCNTPNKKYNSDEFFIMG 60
+SELVTEYAN TNNLLFK+LIKH+SGN++ +KNF QC++EI K N PNK+Y ++FFI+G
Sbjct: 83 LSELVTEYANVTNNLLFKKLIKHLSGNNQLVKNFYQCIREIIKYNAPNKEYKPNQFFIIG 142
Query: 61 KHKQNQLAKIYSYFKKLSEGEIKPQN-EDILKKLKSLDEIFKTTDFTKFTPETEVKDIIK 119
K KQ QLAKIYS+ K+LS EIKPQ+ EDILKKL+ LD+IFKTTDFTKFTP+TE+KDIIK
Sbjct: 143 KGKQKQLAKIYSHLKELSASEIKPQDMEDILKKLEELDKIFKTTDFTKFTPKTEIKDIIK 202
Query: 120 EIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCK 179
EIDEKYPINENFK+QF F NI + ++ +K+FER KESLIREIE +CK
Sbjct: 203 EIDEKYPINENFKRQFNEFESNI-----------EKHDEIKKDFERNKESLIREIENHCK 251
Query: 180 NQ----KTLEFDYDVLLDNIQQICKKYIASHVVNDASKDIKSMMCQFYLEKIDLLFNSEI 235
N+ + E+ + LL NIQQICK YI SH VND SKDIKSMMCQFYL++IDLL NSEI
Sbjct: 252 NECNSEEEPEYKINDLLKNIQQICKNYIESHAVNDVSKDIKSMMCQFYLKQIDLLVNSEI 311
Query: 236 EQYRYSDFLESARKFLWEDIKTLDEKSGVHLFPKNIGEIKDKFETNKEKFKQSKNYSEFA 295
+YRYS+ E ++ LWE IK LD +SG++LFPKNIGEIKDKFE NKEKFKQSKN SEFA
Sbjct: 312 VRYRYSNLFEPIQRSLWESIKILDNESGIYLFPKNIGEIKDKFEANKEKFKQSKNVSEFA 371
Query: 296 EYCRECNPYTAFQNLRNKVQFPLSGGLSYKSYKLVPTMKEYKEPKITDNDLKTALFTLFD 355
EYCRECNPYTAF N ++ GLS++ K VP MKEYKEPKITDNDL+
Sbjct: 372 EYCRECNPYTAFNFHLN-----INNGLSHQFEKFVPIMKEYKEPKITDNDLEAISTKETG 426
Query: 356 YSSPSEFDQWDWFFRNSLFRKMDFNPYNIWKNLNLDDK------KDFAEILEYNMQLKIN 409
+S WFF+ SLF K +FNP IW L + + KD + + I+
Sbjct: 427 LASQL---SGHWFFQLSLFNKTNFNPNKIWIPLEFNKRSKIKFDKDLEIYFDSHESFNIS 483
Query: 410 SLITKEFNKLLAIAEDSSQDSYQL-KIRVRHNN------KFYD------YSKKSTA---- 452
+E ++ S+D + + KI +H+N +F++ ++K S A
Sbjct: 484 KKYLQEIDQESLKKIKQSKDFFSIQKIESKHDNNDILQLEFFENDTSFLFAKGSFAEILE 543
Query: 453 -----------------------------YEIKLEI--------------------HDCR 463
Y++K+ + +DCR
Sbjct: 544 YNMQLKIDSLITKEFNKLLAIVQDSPQDSYQLKIRVRHNNKLPREKYTEHEIKLEVYDCR 603
Query: 464 KSHDQNEPIILSQQSTGFQWAFNFMFGFLYNVGSDFSLNKNIIYVMDEPATHLSVPARKE 523
KSHD NEPIILSQQSTGFQWAFNFMFGFLYNVGS FS N NIIYVMDEPATHLSVPARKE
Sbjct: 604 KSHDHNEPIILSQQSTGFQWAFNFMFGFLYNVGSHFSFNHNIIYVMDEPATHLSVPARKE 663
Query: 524 FRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEKETEGSVIKNHFNYPLNNAGKD 583
FR+FLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEKETEGSVIKNHFNYPLNNA KD
Sbjct: 664 FRKFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEKETEGSVIKNHFNYPLNNASKD 723
Query: 584 SDALDKIKRSLGVGQHVFHNPKKHQIIFVEGITDYCYLSAFKLYFNEREFKENPIPFTFL 643
SDALDKIKRSLGVGQHVFHNP+KH+IIFVEGITDYCYLSAFKLY +E+K+NPIPFTFL
Sbjct: 724 SDALDKIKRSLGVGQHVFHNPQKHRIIFVEGITDYCYLSAFKLYLRYKEYKDNPIPFTFL 783
Query: 644 PISGLKNNPNEMKETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQFKNANEEMHDPIR 703
PISGLKN+ N+MKETI+KLCELDNHPIVLTDDDRK + Q+A SE+FK ANEEMHDPI
Sbjct: 784 PISGLKNDSNDMKETIEKLCELDNHPIVLTDDDRKCVFN-QQATSERFKRANEEMHDPIT 842
Query: 704 ILQLSDCDRHFKQIEDCFSANDRKKYAKNKQMELAMAFKTRLLYGEKDDVMSEETKKNFL 763
ILQLSDCDRHFKQIEDCFSANDR KYAKNKQMEL+MAFKTRLLYG +D + ++TK+NFL
Sbjct: 843 ILQLSDCDRHFKQIEDCFSANDRNKYAKNKQMELSMAFKTRLLYG-GEDAIEKQTKRNFL 901
Query: 764 KLFEWI 769
KLF+WI
Sbjct: 902 KLFKWI 907
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 37.7 bits (86), Expect = 0.001
Identities = 48/206 (23%), Positives = 76/206 (36%), Gaps = 22/206 (10%)
Query: 111 ETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKY---------LEKTRK 161
E E K++ KE ENFK+Q + + N + Y LE+ +
Sbjct: 112 EKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEE 171
Query: 162 NFERKKESLIREIEYYCKNQ-----------KTLEFDYDVLLDNIQQICKKYIASHVVND 210
E +K +LIR E K + T F D +N+ + +V
Sbjct: 172 ELEAQKSALIRRYEKEAKEEGKKKSYAILAEATARFAGDYATENLTSRIALPCSDYVGRV 231
Query: 211 ASKDIKSMMCQFYLEKIDLLFNSEIEQYRYSDFLESARKFLWEDIKTLDEKSGVHLFPKN 270
KD K++ + +D+ F+ + + S F R+ E IK L E + P
Sbjct: 232 IGKDGKNIEAFKKISGVDIEFSEDSSELCLSSFNIYRREVASETIKILIEDGRIQ--PNR 289
Query: 271 IGEIKDKFETNKEKFKQSKNYSEFAE 296
I E+ + N EK S+ S E
Sbjct: 290 IEEVYHRVARNMEKELLSEGESVVLE 315
Score = 26.6 bits (57), Expect = 2.6
Identities = 35/152 (23%), Positives = 64/152 (42%), Gaps = 19/152 (12%)
Query: 111 ETEVKDIIKEIDEKYPINE-NFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKES 169
E + K ++ + + E +QQ+ L + K + LK+LE K F R
Sbjct: 50 EFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRD--- 106
Query: 170 LIREIEYYCKNQKTLEFDYDVL---LDNIQQ---ICKKYIAS------HVVNDASKDIKS 217
E Y K +K LE + +L +N ++ ICK+ A + + +IKS
Sbjct: 107 ---EKRYLEKEKKELEKERQILEQERENFKKQRAICKEAQAKALDAMLNYMAYTKDEIKS 163
Query: 218 MMCQFYLEKIDLLFNSEIEQYRYSDFLESARK 249
M+ + E+++ ++ I +Y E +K
Sbjct: 164 MILEQLEEELEAQKSALIRRYEKEAKEEGKKK 195
>ref|NP_222888.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 213
Score = 32.7 bits (73), Expect = 0.037
Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEKET 564
I + DEP +L + + L+ Y +N VLATHD L T ++ +EKE+
Sbjct: 152 IIIADEPTGNLDTTSANQVISMLQNYITENEGALVLATHDEHLAFT--CSQVYRLEKES 208
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 32.3 bits (72), Expect = 0.048
Identities = 43/211 (20%), Positives = 89/211 (41%), Gaps = 23/211 (10%)
Query: 98 EIFKTTDF-TKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKKK-------- 148
+ K+T+F K T TE ++++E E +++ + + NL K+
Sbjct: 15 DALKSTNFHEKHTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTELQKQV 74
Query: 149 --IKNSLKYLEKTRKNFERKKESLIREIEYYCKNQ-------KTLEFDYDVLLDNIQQIC 199
+KNS + LE + ++ R+KE+L ++ E K + K L + + L + +
Sbjct: 75 NELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLT 134
Query: 200 KKYIASHVVNDASKDIKSMMCQFYLEKIDLLFNSEIEQYRYSDFLESARKFLWEDIKTLD 259
K+ S + K+ K ++ EK DL + + +D E ++ E + +
Sbjct: 135 KEKTESQKQVNELKNSKQVLEN---EKADLTNENTKLKTDKTDLTEKNQRLTTEKTELNN 191
Query: 260 EKSGVHLFPKNIGEIKDKFETNKEKFKQSKN 290
+ +G+ + + DK KE ++ N
Sbjct: 192 KITGLATEKERLA--ADKENLTKESRQRKPN 220
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 32.0 bits (71), Expect = 0.062
Identities = 39/153 (25%), Positives = 74/153 (47%), Gaps = 16/153 (10%)
Query: 640 FTFLPISGL--KNNPNE-MKETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSEQF-KNA- 694
FT +P+ K NP E KETI+ + N +L + R+D + Q+ + +F KNA
Sbjct: 3 FTRIPLKVFIKKYNPQEPKKETIENFEKEINS--LLENVPRQDDEEFQKNEINKFLKNAY 60
Query: 695 NEEMHDPIRILQLSDCDRHFKQIEDCFSANDRKKYAKNKQMELAMAFKTRLLYGEKDDVM 754
+ + ++ + D+ + + + + N++ ++ KN++ L+ AF +LY ++
Sbjct: 61 GYDCNTYEKVDSVIYVDKEVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEE--- 117
Query: 755 SEETKKNFLK------LFEWIKKECNNLTIKKE 781
E+ K N LK E+ +C +L KE
Sbjct: 118 IEKEKNNSLKHTIICNAHEFFLFDCKDLLSLKE 150
Score = 26.2 bits (56), Expect = 3.4
Identities = 36/146 (24%), Positives = 60/146 (40%), Gaps = 20/146 (13%)
Query: 39 KEIKKCNTPNKKYNSDEFFIMGKHKQNQLAKIY---SYFKKLSEGEIKPQNEDILKKLKS 95
K NT NK + + +I+G +QN KI S K G +K +K K+
Sbjct: 220 KRTLDANTLNKDFYEELLYILGLEEQNDKGKILIKPSRTKNSLSGALK-------EKYKN 272
Query: 96 LDEIFKTTDFTKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKK-KIKNSLK 154
LD+ + + + + E I+ ++ R+F L GN K N+L
Sbjct: 273 LDD----EEVMALLIAWNNRILFLRLLESLLISFEHFEKERSF-LTTGNFKDFNALNTLF 327
Query: 155 YLEKTRKNFER----KKESLIREIEY 176
+ +KN ER K+ ++ +I Y
Sbjct: 328 FEVLAKKNSERLPEIKENKILGKIPY 353
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 31.6 bits (70), Expect = 0.081
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 727 KKYA-KNKQMELAMAFKTRLL--YGEKDDVMSEETKKNFLKLFEWIKKECNNLTIKKEYI 783
K YA NK+ E RLL + K+ ++SE KK+F+KLF I K N L + +
Sbjct: 602 KGYADNNKEYEGYEGLIERLLTEFPLKEPIISESQKKDFIKLFGKILKLENILNSFENFN 661
Query: 784 KFDYNTPQ 791
K D+ P+
Sbjct: 662 KDDHINPR 669
Score = 25.4 bits (54), Expect = 5.8
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 27 NSEGIKNFCQCVKEIKKCNTPNKKYNSDEFFIMGKHKQNQLAKIYSYFKK 76
+S IK +C+ E T NKK+NS I+ L K Y FK+
Sbjct: 390 DSRRIKEIAKCILERFHQATKNKKFNS----ILACSGIEALKKYYQAFKE 435
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 31.2 bits (69), Expect = 0.11
Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 128 NENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQ--KTLE 185
NEN K L + + K++L YLEK + + +E NQ + L+
Sbjct: 191 NENAKDSLPLKALFLSGVDALSKDALYYLEKIMRFGSKNGVLSFVNLESEKNNQSAEDLK 250
Query: 186 FDYDVLLDNIQQICKKYIASHVVNDASKDIKSMMCQFYLEKIDLLFNSEIEQYRYSDFLE 245
+ D C KY+ +++D + IKS Q + +KI + + E R L+
Sbjct: 251 RYAEFFKDRTSFECLKYLNVEIISD--QGIKSQHMQDFADKIKAYYKQKKEVKRELKDLQ 308
Query: 246 SARKF 250
++F
Sbjct: 309 RDKEF 313
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 30.4 bits (67), Expect = 0.18
Identities = 32/142 (22%), Positives = 67/142 (46%), Gaps = 22/142 (15%)
Query: 62 HKQNQLAKIYSYFKKLSEGEIKPQNED--ILKKLKSLDEIFKTTDFTKFTPETEVKDIIK 119
+K Q + S ++S ++ +E+ + LKS++ I+ K T + +K++ +
Sbjct: 8 NKDKQQQNVSSGISQISLKKVATFDENGASFENLKSINFIYGANGSGKTTTSSFLKNLAE 67
Query: 120 E-IDEKYPIN------------ENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFER- 165
I++K+ + E + +QF+ +L ++K +KT +N E+
Sbjct: 68 NGIEDKFANSKIAWYNNESLKIEVYNKQFKEEQLR----NSQVKGIFTLGKKTNENLEKI 123
Query: 166 --KKESLIREIEYYCKNQKTLE 185
KKES+ +E E KN+ +L+
Sbjct: 124 ESKKESINKENEKKIKNEASLQ 145
Score = 28.1 bits (61), Expect = 0.90
Identities = 46/210 (21%), Positives = 84/210 (39%), Gaps = 38/210 (18%)
Query: 20 LIKHVSGNSEGIKNFCQCVKEIKK-----------CNTPNKKYN---------SDEFFIM 59
L K +S N E +K +KE++K NT K Y DE F
Sbjct: 454 LEKEISENQEKVKKLENEIKELEKNMVSIKPIVNEINTLLKGYGFTNFSLACTEDEKFYR 513
Query: 60 GKHKQNQLAK-----------IYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFT-K 107
+ + QL + Y+ L++G +K +N+ K+ +D+ + D
Sbjct: 514 IQREDGQLVGETLSEGEVTFITFLYYYHLAKGSLK-ENDISKNKVLVIDDPISSLDSNIL 572
Query: 108 FTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKK 167
F VKD++KE E+ N KQ + ++ LK + + KK
Sbjct: 573 FMVSVLVKDLMKETMEE---KTNIKQIIILTHNTYFYKEITLEYDLKRYQGKYSFWIIKK 629
Query: 168 ESLIREIEYYCKNQKTLEFDYDVLLDNIQQ 197
++ + +I+ Y +N ++ Y++L ++Q
Sbjct: 630 DNNVSKIKGYKEN--PIKNSYELLWQEVKQ 657
Score = 27.3 bits (59), Expect = 1.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 385 WKNLNLDDKKDFAEILE-YNMQLKINSLITKEF 416
WKNL ++++F EILE + + K I KEF
Sbjct: 163 WKNLYKKNEEEFKEILEGFKRKEKFKGKILKEF 195
>ref|NP_223476.1| osmoprotection ATP-binding protein [Helicobacter pylori J99]
Length = 216
Score = 30.4 bits (67), Expect = 0.18
Identities = 13/40 (32%), Positives = 22/40 (54%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHD 545
+ ++DEP + L RK + +KE + TF++ THD
Sbjct: 156 LILLDEPFSALDSLNRKNLQDLIKEIHQNSCATFIMVTHD 195
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 30.0 bits (66), Expect = 0.24
Identities = 46/174 (26%), Positives = 64/174 (36%), Gaps = 12/174 (6%)
Query: 87 EDILKKLKSLDEIFKTTDFTKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLK 146
E LK LK +F + ++ D E +Y IN+N F L L
Sbjct: 690 EQQLKTLKESLSVFAERSNNGYYITLDLND---ENLARYGINKNAVLDTIKFALGGATLT 746
Query: 147 KKIKNSLKY-----LEKTRKN-FERKKESLIREIEYYCKNQKTLEFDYD---VLLDNIQQ 197
IK Y LE T +N E+ K I+ Y ++ YD +L + +
Sbjct: 747 TMIKGVESYPISLRLEDTERNTIEKLKNLYIKTAYNYMPLRELAHVYYDNSPAVLKSEKG 806
Query: 198 ICKKYIASHVVNDASKDIKSMMCQFYLEKIDLLFNSEIEQYRYSDFLESARKFL 251
+ +I N S D + Q LEKI L E S +LE A K L
Sbjct: 807 LNVNFIYIVPQNGISSDTYRQLAQKTLEKIQLPSGYYYEFSGESQYLEEAFKTL 860
>ref|NP_223020.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 233
Score = 30.0 bits (66), Expect = 0.24
Identities = 25/91 (27%), Positives = 41/91 (44%), Gaps = 8/91 (8%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDH----LDEIRIVE 561
+ +MDEP T L A + + +T ++ATHDP ++D+ L I +
Sbjct: 142 LVIMDEPETSLEQNALIRLSNLIS-LRNTQQLTSIIATHDPIVLDSCEWVLLLKNGNIAQ 200
Query: 562 KETEGSVIKN---HFNYPLNNAGKDSDALDK 589
+ S++K+ FN+ KD AL K
Sbjct: 201 YKPLNSILKSVAKTFNFKEKPTTKDLLALLK 231
>ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 30.0 bits (66), Expect = 0.24
Identities = 17/57 (29%), Positives = 27/57 (46%), Gaps = 1/57 (1%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVEK 562
I + DEP T L V + + +KE K + + THD +V DE+ ++ K
Sbjct: 175 ILIADEPTTALDVTIQAQILELMKELQQKKGTSILFITHDLGVV-AQIADEVVVMYK 230
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 29.6 bits (65), Expect = 0.31
Identities = 59/270 (21%), Positives = 104/270 (37%), Gaps = 59/270 (21%)
Query: 2 SELVTEYANATNNLLFKELIKHVSGNSEGI--KNFCQCVKEIKKCNTPNKK--------- 50
S+L+T A NL E +K G + KN KE+K N K+
Sbjct: 282 SDLIT----AVYNLSVGEWVKLGYGKESVLLKKNNLNAFKELKDLNDREKEIALLKALLL 337
Query: 51 -----------YNSDEFFIMGKHKQN-QLAKIYSYFKKLS-------EGEIKPQNEDILK 91
Y D ++ H N + + +FK L+ E + +D+L+
Sbjct: 338 LGMQKRYKVEGYFHDPLMLVFTHSVNMENSDAEIFFKTLARVIENDDESDFSKAKDDLLE 397
Query: 92 KLKSLDEIFKTTDFTKFTPETEV-KDIIKEIDEK-------YPINENFK-------QQFR 136
+LK+ + +F + + EV K+ +K +D K Y N + + Q
Sbjct: 398 ELKNPEFLFSDGKDKEKDYKIEVFKESLKGMDFKGLKEAVFYASNGHIEVIINPKNNQEI 457
Query: 137 TFRLN----------IGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEF 186
F+LN IG++ + I+ LK ++ KN K+ES +I+ N
Sbjct: 458 AFKLNTSDKVFCLIRIGDITEWIREKLKSVKVVSKNLSFKEESYFSQIDKSSINILVGSR 517
Query: 187 DYDVLLDNIQQICKKYIASHVVNDASKDIK 216
+D D+ + ++ + +DA K +K
Sbjct: 518 AFDTGWDSTRPSVILFLNIGLDDDAKKLVK 547
Score = 27.7 bits (60), Expect = 1.2
Identities = 45/171 (26%), Positives = 70/171 (40%), Gaps = 39/171 (22%)
Query: 32 KNFCQCVKEIKKCNTPNKKYNSDEFFIMGKHKQNQLAKIYSYFKKLSEGEIKPQNEDILK 91
K+ + EIK PN+K DEF + K +FK++ ++K K
Sbjct: 709 KDLDYMISEIKGKLYPNQKVPKDEFNALDNEK-------IVHFKRV---KVKAD-----K 753
Query: 92 KLKSLDEIFKTTDFTKFTPETEVKDIIK-EIDEKYPINENFKQQFRTFRLNIGNLKK--- 147
K K + I + + ET K I + EID P + +Q RTF++ L K
Sbjct: 754 KEKLIQTIQEVKEHAPLDKETLRKKIAQGEID---PYDTEKHKQDRTFKVGDAELLKLKE 810
Query: 148 -------KIKNS--LKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYD 189
K KN LK++ K + + +E L K +TL+ +YD
Sbjct: 811 HYYTPLIKAKNCDWLKHVVKVKSESDFLEELL--------KITETLQENYD 853
>ref|NP_223384.1| putative [Helicobacter pylori J99]
Length = 355
Score = 29.6 bits (65), Expect = 0.31
Identities = 29/101 (28%), Positives = 46/101 (44%), Gaps = 4/101 (3%)
Query: 78 SEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETEVKDIIKEIDEKYP--INENFKQQF 135
+E E+ D+L S+ I K T ++ T K ++ + EK P + +K Q
Sbjct: 204 AELELLQSENDLLNDFTSI--IVKYTKTLEYEIYTFAKQVLLKACEKDPNLYDLAYKVQG 261
Query: 136 RTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEY 176
++F L KK S+K L K K + +E+L R I Y
Sbjct: 262 KSFTLKDFFAKKPNLGSIKLLLKHEKVQDHLEENLKRFINY 302
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 28.1 bits (61), Expect = 0.90
Identities = 56/249 (22%), Positives = 105/249 (41%), Gaps = 56/249 (22%)
Query: 68 AKIYSYFKKLSEGEIKPQNEDILKKLKSLDE------IFKTTDFTK-------------- 107
A IYS F+ E K + KK+ +DE + + DF +
Sbjct: 207 ASIYSVFRNFVTPEFKFYFHTVKKKIV-IDETNRDYGLIFSNDFMRAYNEKQKRESFYDI 265
Query: 108 ---FTPETEVKDIIKE--IDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYLEK---T 159
T E ++ D + E +++K+ + NF++ R R + N K +I+ + L K T
Sbjct: 266 SFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPT 325
Query: 160 RKNFERKKESLI--REIEYYCKNQKTLEFDYDVLLDNIQQIC--KKYIASHVVNDASKDI 215
R E K+ +I ++ E+Y ++ V ++ IC K ++ K++
Sbjct: 326 RLK-EYTKDGIIYSKQCEFY---------NFLVGMNEAPFICNRKDLYLKEKMHGGVKEV 375
Query: 216 KSMMCQFYLEKIDLLFNSEI-EQY----RYSDFLESARKFLWEDIKTLD-EKSGVHLF-P 268
++ K + N ++ E+Y S++ ++ L++ I LD E +H + P
Sbjct: 376 ------YFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSP 429
Query: 269 KNIGEIKDK 277
KN +KDK
Sbjct: 430 KNSQVLKDK 438
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 28.1 bits (61), Expect = 0.90
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 503 KNIIYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDP 546
KN++ ++DEP L + E ++ L ++ + +++ +L +HDP
Sbjct: 150 KNLL-LLDEPLNALDNALKNEVQQGLLDFIKRENLSVLLVSHDP 192
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 28.1 bits (61), Expect = 0.90
Identities = 29/127 (22%), Positives = 61/127 (47%), Gaps = 6/127 (4%)
Query: 58 IMGKHKQNQLAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETEVKDI 117
+ G+ +L + + F+ + E+K + +K +SL I +T + ++++ +
Sbjct: 14 LFGEEAAQELLQCSAIFES-KKAELKEDLRQLSEKEQSL-RILQTENARLLDEKSDLLNK 71
Query: 118 I-KEIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEY 176
KEIDEK ++ F+T + KK++KN ++ E + ++ K+S I E
Sbjct: 72 KEKEIDEKLKNLAAKEEAFKTLQTEE---KKRLKNLIEENEGILREIKQAKDSKIGETYS 128
Query: 177 YCKNQKT 183
K+ K+
Sbjct: 129 KMKDSKS 135
Score = 25.4 bits (54), Expect = 5.8
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 18 KELIKHVSGNSEGIKNFCQCVKEIKKCNTPNKKYNSDEFFIMGKHKQNQLAKIYSYFKKL 77
K+ +K++ +EGI + K+ K T +K +S I+ +I K
Sbjct: 98 KKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDSKSALILENLPTQNALEILMALKPQ 157
Query: 78 SEGEIKPQNEDILKKLKSLDEIF--------------KTTDFTKFTPETEVKD-IIKEID 122
G+I + + KK +L E++ KTTD T TP T K+ +K+ +
Sbjct: 158 ELGKILAKMDP--KKAAALTELWQKPPKENKENKESQKTTDPTPPTPPTPPKEPTLKDPN 215
Query: 123 EKYP 126
K P
Sbjct: 216 VKEP 219
>ref|NP_222739.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 321
Score = 28.1 bits (61), Expect = 0.90
Identities = 18/80 (22%), Positives = 37/80 (45%), Gaps = 4/80 (5%)
Query: 343 DNDLKTALFTLFDYSSPSEFDQWDWFFRNSLFRKMDFNPYNIWKNLNLDDKKDFAEILEY 402
+N L L + + + P D WF+ +S + D PY I K DD E +
Sbjct: 58 NNSLVEGLIIIRELTIPL-IDMKKWFYYDSQNKSKDLRPYRIEKEKGEDDIVMICEFSRW 116
Query: 403 NMQLKI---NSLITKEFNKL 419
+ ++I + +++K++ ++
Sbjct: 117 TIGVRIYEADRILSKKWTEM 136
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 27.7 bits (60), Expect = 1.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 235 IEQYRYSDFLESARKFLWEDIKTLDEKSGV 264
IE Y D ++S +K + + KTLDEK +
Sbjct: 101 IEDKDYHDTMQSIKKEMEDSFKTLDEKEAI 130
>ref|NP_223203.1| cag island protein [Helicobacter pylori J99]
Length = 376
Score = 27.7 bits (60), Expect = 1.2
Identities = 21/88 (23%), Positives = 40/88 (44%), Gaps = 4/88 (4%)
Query: 371 NSLFRKMDFNPYNIWKNLNLDDKKDFAEILEYNMQLKINSLITKEFNKLLAIAEDSSQDS 430
N L++K+ NPY N ++D + Y Q+K +S+ F K A +D +Q
Sbjct: 119 NPLYKKLLPNPYAYVLNQETFTQEDKERLSYYYPQVKTSSI----FKKTTATTKDKAQAL 174
Query: 431 YQLKIRVRHNNKFYDYSKKSTAYEIKLE 458
Q+ + + S+ + +Y+ +E
Sbjct: 175 LQMGVFSLDEEQNKKASRLALSYKQAIE 202
>ref|NP_222956.1| ABC transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 516
Score = 27.7 bits (60), Expect = 1.2
Identities = 19/84 (22%), Positives = 38/84 (44%), Gaps = 3/84 (3%)
Query: 501 LNKNIIYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIV 560
+N + + DEP T L + + LK+ + + ++ + +HD V D + ++
Sbjct: 161 INAPKLLICDEPTTALDAQIQNQILDLLKQLSVEKNIALLFISHDLKAVKR-LADRVYVL 219
Query: 561 EKE--TEGSVIKNHFNYPLNNAGK 582
+K E ++ K FN P + K
Sbjct: 220 KKGEIVETNLTKELFNDPKHEYSK 243
Score = 25.0 bits (53), Expect = 7.6
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIVE--KE 563
I ++DEP + L +K L K ++++ +HD ++ D + +V K
Sbjct: 432 IILLDEPTSALDKSIQKSVLELLLNLQEKQDLSYLFISHDLDVIKA-FCDRVLVVSEGKI 490
Query: 564 TEGSVIKNHFNYP 576
E I+ F+ P
Sbjct: 491 VETGAIEEVFDNP 503
>ref|NP_223646.1| putative [Helicobacter pylori J99]
Length = 150
Score = 27.3 bits (59), Expect = 1.5
Identities = 20/76 (26%), Positives = 38/76 (49%), Gaps = 3/76 (3%)
Query: 142 IGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQ--KTLEFDYDVLLDNIQQIC 199
I L +KIK +E T+KN K L+ + Y + + + L++D+ L+D++ ++
Sbjct: 5 ITKLPEKIKELENSIEITKKNIA-KYTRLVEQKPSYPRLEYLQALKWDHKTLIDDLAKMS 63
Query: 200 KKYIASHVVNDASKDI 215
K N SK++
Sbjct: 64 KDRNYKPAFNPKSKEV 79
>ref|NP_223539.1| IRON(III) DICITRATE TRANSPORT SYSTEM ATP-BINDING PROTEIN
[Helicobacter pylori J99]
Length = 255
Score = 27.3 bits (59), Expect = 1.5
Identities = 14/63 (22%), Positives = 31/63 (48%)
Query: 501 LNKNIIYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIV 560
L + + ++DEP + L + + F +K+ K ++ ++ HDP LV + +
Sbjct: 155 LQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKKRELSVLVNIHDPNLVARHSTHVVMLK 214
Query: 561 EKE 563
+K+
Sbjct: 215 DKK 217
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 27.3 bits (59), Expect = 1.5
Identities = 38/164 (23%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 63 KQNQLAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTK------FTPETEVKD 116
KQN I ++ K+LS + + ++L L ++ T F K + ET ++
Sbjct: 436 KQNNQIVITTHHKRLSVLMAENKEVELLAALYDEEKERPTYTFLKGVIGKSYAFETALRY 495
Query: 117 IIKE--IDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREI 174
+ I++ K++ N L++++K ++LE K E K + + E+
Sbjct: 496 GVPPFLIEKAKAFYGEDKEKLNVLIENSSTLERELKQKNEHLENALKEQEDLKNAWLLEM 555
Query: 175 EYYCKNQKTLEFDYDVLLDNIQQICKKYIASHVVNDASKDIKSM 218
E QK + + L+ Q + S V ASKD SM
Sbjct: 556 E----KQKEIFHHKKLELEKSYQQALNILKSEV---ASKDTSSM 592
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 27.3 bits (59), Expect = 1.5
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 16/129 (12%)
Query: 674 DDDRKDGSDPQRAKSEQFKNANEEMHDPIRILQLSDCDRHFKQIEDCFSANDRKKYAKNK 733
DDD SDP++ + NEE +++ D + +++++ F A D+ K K
Sbjct: 239 DDDENSVSDPKKDDDSEEDEENEERK---KVVSEKD-KKRVEKVQESFKALDKAKKEWLK 294
Query: 734 QMELAMAFKTRLLYGEKDDVMSEETKKNFLKLFEWIKKECNNLT------------IKKE 781
+E + K L +T K+ L E K N L +KE
Sbjct: 295 ALEAPIDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKE 354
Query: 782 YIKFDYNTP 790
+ +Y P
Sbjct: 355 LKRLEYKLP 363
>ref|NP_222793.1| 30S RIBOSOMAL PROTEIN S20 [Helicobacter pylori J99]
Length = 89
Score = 27.3 bits (59), Expect = 1.5
Identities = 26/78 (33%), Positives = 39/78 (49%), Gaps = 11/78 (14%)
Query: 94 KSLDEIFKTTDFTKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSL 153
K + + K T+ +F +T+VK+IIK + E IN+ K Q RL I N K
Sbjct: 9 KRIRQTIKRTERNRFY-KTKVKNIIKAVREAVAINDVAKAQ---ERLKIAN-----KELH 59
Query: 154 KYLEK--TRKNFERKKES 169
K++ K +KN +K S
Sbjct: 60 KFVSKGILKKNTASRKVS 77
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 26.9 bits (58), Expect = 2.0
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 333 MKEYKEPKITDNDLKTALFTLFDYSSPSEFDQWDWFFRNSLFRKMDFNPYNIWKNLNLDD 392
MKE+ + L+T L FD + S D W F + N +K L + +
Sbjct: 133 MKEHSKEFPNKKQLQTMLENAFDNGAESFIDDWHERFGG-------ISRENTYKALGIKE 185
Query: 393 KKDFAEILEYNMQLKINSLITKEFNKLLAIAEDSSQDSYQLKIRVRHNNKFYDYSKKSTA 452
D +IL + + I K+F E+S+ D+ Q + + + DY K T
Sbjct: 186 YSDEGKILAFGERSYIRQ-YKKDF-------EESTYDTRQTLSAMANMSGENDY--KITW 235
Query: 453 YEIKLEIH 460
+ K ++H
Sbjct: 236 LKPKYQLH 243
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 26.6 bits (57), Expect = 2.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 152 SLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYDVLLDNIQ 196
SL L K KN E++ + +E E + + L D LD++Q
Sbjct: 47 SLLVLNKEIKNIEKQHALITKEFEKKRETNEKLSLQMDEFLDDLQ 91
>ref|NP_224135.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99]
Length = 457
Score = 26.6 bits (57), Expect = 2.6
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 24 VSGNSEGIKNFCQCVKEIKKCNTPNKKYNSDEFFIMGKHKQNQLAKIYSYFKKLSEGEIK 83
VS + + + V + TPN + +F + H + ++K+YS KK+ E E
Sbjct: 372 VSSRQKNVALARKLVVYFARLYTPNPTLSLAQFLDLKDH--SSISKMYSSVKKMLEEEKS 429
Query: 84 P----QNEDILKKLKSLDE 98
P E+I +L L++
Sbjct: 430 PFILSLREEIKNRLNELND 448
>ref|NP_223816.1| AMINO ACID ABC TRANSPORTER, BINDING PROTEIN PRECURSOR [Helicobacter
pylori J99]
Length = 277
Score = 26.6 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
Query: 748 GEKDDVMSEETKKNFLKLFEWIKKECNNLTIKKEYIKFDY 787
G+KD V++ KK KL EW+ E ++L I +++K Y
Sbjct: 220 GDKD-VIAPAIKKGNPKLLEWLNNEIDSL-ISSDFLKEAY 257
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 26.2 bits (56), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 154 KYLEKTRKNFERKKESLIREIE 175
+Y E KN E++KE LI+ IE
Sbjct: 267 RYTEWMPKNLEKRKEELIKRIE 288
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 26.2 bits (56), Expect = 3.4
Identities = 48/246 (19%), Positives = 87/246 (34%), Gaps = 51/246 (20%)
Query: 56 FFIMGKHKQNQLAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETEVK 115
FF K+ L + +F L + P N++ + F T DF KF
Sbjct: 377 FFTKKIDKKQYLKSVEKHFGSLKGKQRFPNNDEF-------KDSFITIDFYKFKKNKYFL 429
Query: 116 DIIKEIDEKYPIN-----------------------ENFKQQFRTFRLNIGNL------- 145
+ +++ D P++ ENF+ + IGNL
Sbjct: 430 ERLEKFDTNEPVDTQKCEIEHIMPQTLNPKWEGDLGENFEAIHEKYLHTIGNLTLTGYNA 489
Query: 146 --KKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYDVLLDNIQQICKKYI 203
K + +EK K K ++++E + +K +E L+D +I I
Sbjct: 490 KYSNKSFQEKRDMEKGFKQSSLKLNKNLKDLEPF--GEKEIEKRASDLVDWALKIWTYPI 547
Query: 204 ASHVVNDA--------SKDIKSMMCQFYLEKIDLLFNSEIEQYRYSDFLESARKFLWEDI 255
+ K K ++ L+K ++ ++ Y++S L ++I
Sbjct: 548 LEAETLEEYKPKKEKKEKKEKKEKEEYKLKKEKKVY--DLSSYKFSPHSRELFDILRKEI 605
Query: 256 KTLDEK 261
KTLDE+
Sbjct: 606 KTLDER 611
>ref|NP_222886.1| putative [Helicobacter pylori J99]
Length = 406
Score = 26.2 bits (56), Expect = 3.4
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 386 KNLNLDDKKDFAEILEYNMQLKINSLITKEFNKLLAIAEDSSQDSYQLKIRVRHNNKFYD 445
KN+ D KK + +LEYN + +L+ NK I + +Y+ I ++ +Y
Sbjct: 42 KNIRADVKKLVSILLEYNKTIACENLLN---NKNEIINSNFPLTAYKNVIEYFLSHGYYS 98
Query: 446 YSKKSTAYEIKLEIHDCRKSHDQNEPII 473
+K K I + K+ +N PII
Sbjct: 99 ENKSYYENNAKGRI-NFSKTIKKNRPII 125
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 25.8 bits (55), Expect = 4.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 334 KEYKEPKITDNDLKTALFTLFDYSSPSEFDQ 364
KE + D DLK+ L TL DY + F++
Sbjct: 128 KESLPRHLNDKDLKSFLKTLLDYKPATSFEK 158
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 25.8 bits (55), Expect = 4.5
Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 41/143 (28%)
Query: 258 LDEKSGVHLFPKNIGEIKDKFETNKEK----------------FKQSKNYSEFAEYCREC 301
L++KS +++P+ IK+ NK+ F ++S+F R
Sbjct: 209 LEDKSFYYIYPEEYKNIKEYLHKNKQSLLLKLNAFASKLEKKLFDSGFSHSDFKLVTRVK 268
Query: 302 NPYTAFQNLRNK-------------VQFPLSG--------GLSYKSYK-LVPTMKEY-KE 338
PY+ + ++ K ++ L G+ + ++K +V K+Y
Sbjct: 269 RPYSIYLKMQRKGAVNIDEILDLLAIRILLKNPIDCYKVLGIIHLNFKPIVSRFKDYIAL 328
Query: 339 PKITDNDLKTALFTLFDYSSPSE 361
PK +N KT T+FD SS E
Sbjct: 329 PK--ENGYKTIHTTIFDESSVYE 349
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.4 bits (54), Expect = 5.8
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 371 NSLFRKMDFNPYNIWKNLNLDDKKDFAEILEYNMQLKI-NSLITKEFNKLLAIAEDSSQ 428
N LFR ++ I+ D++ D + +YN + KI I ++L++++E+ +
Sbjct: 161 NWLFRTLNLLSRTIFVISRFDEEADIEDEEDYNKRFKIKKENIQNRLDELISLSEEEKE 219
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 25.4 bits (54), Expect = 5.8
Identities = 30/137 (21%), Positives = 57/137 (40%), Gaps = 13/137 (9%)
Query: 83 KPQNEDILKKLKSLDEIFKTTDFTKFTPETE----VKDIIKEIDEK--YPINE-NFKQQF 135
K N+++ L + + I T F + E + +K+I K + K I E K +F
Sbjct: 155 KTLNDNLKCDLTNAENILAYTFFQEGLMEAQENLSLKNIFKTLSSKDAKAIEELQDKLRF 214
Query: 136 RTFRLNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYDVLLDNI 195
+L++ + KN L+ +++ KESL Y+ +T Y+ L ++
Sbjct: 215 LAPKLSVSIQARHFKNVLESF------YQQNKESLGFFSPYFSLRSQTPSVSYESALASL 268
Query: 196 QQICKKYIASHVVNDAS 212
+ SH +D +
Sbjct: 269 ENYFMALFQSHFKDDTA 285
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 25.4 bits (54), Expect = 5.8
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 7/66 (10%)
Query: 325 KSYKLVPTMKEYKEPK-ITDNDLKT-ALFTLFDYSSPSEFDQWDWFFRNSLFRK-----M 377
K K + + K+P+ ++ +D KT ALF ++D + ++ DWF ++L K M
Sbjct: 50 KEAKQRQQIPDNKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKNKTYLYAM 109
Query: 378 DFNPYN 383
D YN
Sbjct: 110 DLLDYN 115
>ref|NP_222953.1| ATP-DEPENDENT RNA HELICASE DEAD [Helicobacter pylori J99]
Length = 491
Score = 25.4 bits (54), Expect = 5.8
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 53 SDEFFIMGKHKQNQLAKIYSYFKKLSEGEIKPQNEDILKKL--KSLDEIFKTTDFTKFTP 110
SDE F +GKH + + +Y + E +N ++ + LD + K KF P
Sbjct: 104 SDEIFKLGKHTRTKTVCVYGGQSVKKQCEFIKKNPQVMIATPGRLLDHL-KNERIHKFVP 162
Query: 111 ETEVKD 116
+ V D
Sbjct: 163 KVVVLD 168
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 25.4 bits (54), Expect = 5.8
Identities = 18/71 (25%), Positives = 37/71 (51%), Gaps = 8/71 (11%)
Query: 725 DRKKYAKNKQMELAMAFKTRLLYGEKDDVMSEETKKNFLKLFEWIKKECNNLTI--KKEY 782
D K A+++ + AF K++V+ EET + F + +KE +NL+ + E
Sbjct: 115 DNKPLARHQNALILKAFNA------KNEVLKEETYYSVGGGFVYTEKELDNLSEEGENES 168
Query: 783 IKFDYNTPQML 793
+ +D+++ + L
Sbjct: 169 VAYDFSSAKEL 179
>ref|NP_224145.1| arginase [Helicobacter pylori J99]
Length = 322
Score = 25.0 bits (53), Expect = 7.6
Identities = 10/36 (27%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
Query: 283 EKFKQSKNYSEFAEYCRECNPYTAFQNLRNKVQFPL 318
++F+ +KN+ ++ +C+E N + + K +FPL
Sbjct: 51 KEFRYAKNFEDYYLFCKE-NLIPCMKEVFEKKEFPL 85
>ref|NP_223715.1| putative [Helicobacter pylori J99]
Length = 174
Score = 25.0 bits (53), Expect = 7.6
Identities = 16/62 (25%), Positives = 28/62 (44%), Gaps = 2/62 (3%)
Query: 56 FFIMGKHK--QNQLAKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETE 113
FF K+ +N ++ +++ ++ N L+ LK L+E FK T F +
Sbjct: 28 FFFYAKNNLLENTQIRMQYTADAIAKSLLELNNASSLEPLKILEERFKNTPFVLLDADNR 87
Query: 114 VK 115
VK
Sbjct: 88 VK 89
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 7.6
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
Query: 87 EDILKKLKSLD----EIFKTTDFTKFTPETEVKDIIKE 120
E+++KKL+++ E K T TK PE EVK KE
Sbjct: 120 EEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKE 157
>ref|NP_223348.1| putative TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 290
Score = 25.0 bits (53), Expect = 7.6
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 368 FFRNSLFRKM-----DFNPYNIWKNLNLDDKKDFAEILEYNMQLKINSLITKEFNKLLAI 422
FF++ ++ KM DF+ Y + N D KD A + N++ N+ T +L I
Sbjct: 40 FFKDIVYAKMHDKSIDFSWYQQYVMDN-KDPKDIAILCGTNIKTIFNTYGTSTKEVVLDI 98
Query: 423 AEDSSQDSYQLKIRVRHNN 441
A+++ + Y++ + ++N
Sbjct: 99 AQNNLKYLYEILQNLENDN 117
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 25.0 bits (53), Expect = 7.6
Identities = 11/27 (40%), Positives = 16/27 (58%), Gaps = 5/27 (18%)
Query: 745 LLYGEKDDVMSEETKKNFLKLFEWIKK 771
L+YG + +TK+ FLK EW+ K
Sbjct: 212 LIYG-----LPNQTKEGFLKTLEWVLK 233
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 25.0 bits (53), Expect = 7.6
Identities = 17/87 (19%), Positives = 37/87 (41%), Gaps = 12/87 (13%)
Query: 458 EIHDCRKSHDQNEPIILSQQSTGFQWAFNFMFGFLYNVGSDFSLNKNIIYVMDEPATHLS 517
E+ D +K +EP+ S+ +N+ + +G N+ ++ +
Sbjct: 356 ELDDAKKFLLGSEPLRNETISSRLNTTYNYFY-----LGLPLDFNQTLL-------NQIQ 403
Query: 518 VPARKEFRRFLKEYAHKNHVTFVLATH 544
+ KE F+KE+ N +TF + ++
Sbjct: 404 KMSLKEINDFIKEHTEINDLTFAIVSN 430
>ref|NP_223241.1| SIGNAL PEPTIDASE I [Helicobacter pylori J99]
Length = 290
Score = 25.0 bits (53), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 49 KKYNSDEFFIMGKHKQN 65
KK N DEFF++G ++ N
Sbjct: 205 KKINHDEFFMIGDNRDN 221
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 25.0 bits (53), Expect = 7.6
Identities = 18/63 (28%), Positives = 29/63 (45%), Gaps = 6/63 (9%)
Query: 649 KNNPNEMKETIQKLCELDNHPIVLTDDDRKDGSDPQRAKSE------QFKNANEEMHDPI 702
KNN E+ ET+ V++ + K+G+ +AK E Q + NE + + I
Sbjct: 214 KNNQREILETLSNRAGYQMRQNVISSEIFKNGNLNMQAKEEEVREKLQEERENEYLRNQI 273
Query: 703 RIL 705
R L
Sbjct: 274 RSL 276
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 25.0 bits (53), Expect = 7.6
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 103 TDFTKFTPETEVKDIIKEIDEKYPINENFKQQFRTFRLNIGNLKKKIKNSLKYL--EKTR 160
T++ + E+K I+ E + K + E ++ F T N N K+ ++ LK E++R
Sbjct: 38 TEYFLWPSMLELKKILLEENRKKSVLEYAQRHFETALANYRNQKETSESLLKIFNDEESR 97
Query: 161 KNFER 165
+ E+
Sbjct: 98 RILEK 102
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 24.6 bits (52), Expect = 10.0
Identities = 12/39 (30%), Positives = 22/39 (55%), Gaps = 3/39 (7%)
Query: 625 KLYFNEREFKE---NPIPFTFLPISGLKNNPNEMKETIQ 660
++ F+ +E KE NPIP P+ +N P+ +++ Q
Sbjct: 100 QIVFSSKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQ 138
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 24.6 bits (52), Expect = 10.0
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 10/70 (14%)
Query: 148 KIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYDVLLDNIQQICKKYIASHV 207
++KN E + KK I ++Y K+ V +++IQ++CKKY S
Sbjct: 102 EVKNDGNIDELALEKLITKKTKAIVSVDYAGKS---------VEIESIQRLCKKYSLS-F 151
Query: 208 VNDASKDIKS 217
++D+S + S
Sbjct: 152 LSDSSHALGS 161
>ref|NP_223686.1| putative [Helicobacter pylori J99]
Length = 623
Score = 24.6 bits (52), Expect = 10.0
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 29/145 (20%)
Query: 89 ILKKLKSLDEIFKTTDFTKFTPE---------TEVKDIIKEIDEKYPINENFKQQFRTFR 139
I ++ L+++ +T K PE T+ D+IK + K +NE K
Sbjct: 34 IFNQINQLNQVIETY---KKNPERSAEISLYNTQKNDLIKSLTSKV-LNERDK------- 82
Query: 140 LNIGNLKKKIKNSLKYLEKTRKNFERKKESLIREIEYYCKNQKTLEFDYDVLLDNIQQIC 199
+ I +LK EK +K + I+ ++Y + L D ++ + + +
Sbjct: 83 -----IGIDINQNLKEQEKIKKRLSKS----IKGDDFYTFMKDRLSLDILLIDETLYRFI 133
Query: 200 KKYIASHVVNDASKDIKSMMCQFYL 224
K +S + KD++S+ F L
Sbjct: 134 DKIRSSIDIFSEQKDVESISDAFLL 158
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 24.6 bits (52), Expect = 10.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 235 IEQYRYSDFLESARKFLWEDIKTLDEK 261
IE+Y+ ++++ + WE+IK EK
Sbjct: 231 IEEYKKRNYIDPNLRLEWENIKEFREK 257
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 24.6 bits (52), Expect = 10.0
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 12/114 (10%)
Query: 18 KELIKHVSGNSEGIKNFCQCVKEIKKCNTPNKK--YNSDEFFIMGKH--------KQNQL 67
+E+++ +G+K C K+++K N + K N++E I K K NQ+
Sbjct: 30 QEILRKKKSVLKGLKQEI-CQKKLEKENFRSNKETQNTEEDVIFPKALEEVEVYAKDNQV 88
Query: 68 AKIYSYFKKLSEGEIKPQNEDILKKLKSLDEIFKTTDFTKFTPETEVKDIIKEI 121
+ +EG + Q +L++ + L DF + E++D+ KEI
Sbjct: 89 IMAKPCKRLFNEG-LYLQYRSVLRENRLLKNHLSKKDFENSLLKIELRDLHKEI 141
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter pylori
J99]
Length = 268
Score = 24.6 bits (52), Expect = 10.0
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 506 IYVMDEPATHLSVPARKEFRRFLKEYAHKNHVTFVLATHDPFLVDTDHLDEIRIV 560
+ + DEP + L V + + L + + +T++ +HD +V +H+ + IV
Sbjct: 173 VVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYIFISHDLGVV--EHISDKIIV 225
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 24.6 bits (52), Expect = 10.0
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 545 DPFLVDTDHLDEIRIVEKETEGSVIKNHFNYPLNNAGKDSDALDKIKRSLGVGQHVFHNP 604
+P+ + +HL+ ++K+ E + + + N + AL+KI++ L +G H F N
Sbjct: 202 NPYCLGKNHLER-HTLKKKQEIIQEERYLGVVIQN---NQIALEKIEQKLYLGMHHFPNL 257
Query: 605 KKH 607
K++
Sbjct: 258 KEN 260
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 954,501
Number of Sequences: 1491
Number of extensions: 50653
Number of successful extensions: 291
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 73
length of query: 793
length of database: 494,079
effective HSP length: 85
effective length of query: 708
effective length of database: 367,344
effective search space: 260079552
effective search space used: 260079552
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)