BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644835|ref|NP_207005.1| hypothetical protein
[Helicobacter pylori 26695]
(108 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222913.1| putative [Helicobacter pylori J99] 147 5e-38
ref|NP_223065.1| putative [Helicobacter pylori J99] 28 0.044
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 28 0.075
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 27 0.13
ref|NP_223388.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_223252.1| putative [Helicobacter pylori J99] 26 0.29
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 26 0.29
ref|NP_223491.1| putative [Helicobacter pylori J99] 25 0.64
ref|NP_224118.1| putative [Helicobacter pylori J99] 24 0.83
ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99] 24 0.83
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 23 1.4
ref|NP_223629.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 23 1.4
ref|NP_224034.1| DNA transfer protein [Helicobacter pylori ... 23 1.9
ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 23 1.9
ref|NP_224181.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_224063.1| putative thiophene/furan oxidation protein... 23 2.4
ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter... 23 2.4
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 23 2.4
ref|NP_223399.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 23 2.4
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 23 2.4
ref|NP_223234.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 3.2
ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99] 22 3.2
ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter py... 22 3.2
ref|NP_224193.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223702.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNT... 22 5.4
ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99] 22 5.4
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 22 5.4
ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALP... 21 7.0
ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99] 21 7.0
ref|NP_223100.1| putative TRANSCRIPTIONAL REGULATOR [Helico... 21 9.2
ref|NP_222912.1| putative [Helicobacter pylori J99] 21 9.2
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 21 9.2
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 21 9.2
>ref|NP_222913.1| putative [Helicobacter pylori J99]
Length = 85
Score = 147 bits (372), Expect = 5e-38
Identities = 73/85 (85%), Positives = 79/85 (92%), Gaps = 1/85 (1%)
Query: 1 MEFYKRVLKLHHFRNLGRKSPVELPLNSSF-EKHGGLVILVGENNVGKSNVLKALTIFND 59
MEFYKRVLKLHHFRNLG+ SP +L LNSSF EKHGGLV+LVGENNVGKSNVL+AL IFND
Sbjct: 1 MEFYKRVLKLHHFRNLGKNSPTKLLLNSSFDEKHGGLVVLVGENNVGKSNVLEALKIFND 60
Query: 60 ADIKLCNEEDYFKPHEKDSLLSLEE 84
ADIKLC+EEDYFK HEKD+LLSLEE
Sbjct: 61 ADIKLCSEEDYFKDHEKDTLLSLEE 85
>ref|NP_223065.1| putative [Helicobacter pylori J99]
Length = 381
Score = 28.5 bits (62), Expect = 0.044
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 36 LVILVGENNVGKSNVLKAL 54
L I+ G+NN GKSN+L+AL
Sbjct: 24 LNIITGQNNAGKSNLLEAL 42
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 228
Score = 27.7 bits (60), Expect = 0.075
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 39 LVGENNVGKSNVLKALTIFN---DADIKLCNEEDYFKPHEKDSLLSLEEETILDHKITGF 95
L+G N GK+ +LK L N ++K+ N++ K S+ L + LD K+T
Sbjct: 33 LLGPNGAGKTTLLKILAGLNLNYQGEVKILNQK--IGIETKKSVAFLSDGDFLDPKLTPL 90
Query: 96 SCV 98
+
Sbjct: 91 KAI 93
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 26.9 bits (58), Expect = 0.13
Identities = 14/31 (45%), Positives = 23/31 (74%), Gaps = 3/31 (9%)
Query: 36 LVILVGENNVGKSNVLKALTIFNDADIKLCN 66
+V LVG+ NVGKS+++ AL ++A +K+ N
Sbjct: 5 IVALVGQPNVGKSSLINAL---SNAHLKVGN 32
>ref|NP_223388.1| putative [Helicobacter pylori J99]
Length = 192
Score = 26.6 bits (57), Expect = 0.17
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 10 LHHFRNLGRKSPVELP-LNSSFEKHGGLVILVGENNVGKSNVLKALTIFNDADIKLCNEE 68
L F+ L R+S EL L ++ E + GE GKS +++ L +F K+ +E
Sbjct: 41 LEVFQKLERESLKELESLKNNEEWENFTIAFYGETGAGKSTLIECLRMFFKEQSKVDQQE 100
Query: 69 DY 70
+
Sbjct: 101 RF 102
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 25.8 bits (55), Expect = 0.29
Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 4/55 (7%)
Query: 42 ENNVGKSNVLKALTIFND--ADIKLCNEEDYFKPHEKDSLLSLEEETILDHKITG 94
EN+V K+ ++K +FND + IK+ E FK K L+ ++ T ++TG
Sbjct: 262 ENSVVKATLIKPSVVFNDGLSPIKMDKTELIFK--NKQLLIQPQKITYETMELTG 314
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter
pylori J99]
Length = 265
Score = 25.8 bits (55), Expect = 0.29
Identities = 14/41 (34%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 14 RNLGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKAL 54
R LG + +L ++ K +V L+GE+ GKS +L+ L
Sbjct: 9 RLLGSRGAFDLNIDLEI-KEAEVVALLGESGAGKSTILRIL 48
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 24.6 bits (52), Expect = 0.64
Identities = 10/17 (58%), Positives = 14/17 (81%)
Query: 39 LVGENNVGKSNVLKALT 55
++G NVGKS++L ALT
Sbjct: 205 IIGRVNVGKSSLLNALT 221
>ref|NP_224118.1| putative [Helicobacter pylori J99]
Length = 399
Score = 24.3 bits (51), Expect = 0.83
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 41 GENNVG------KSNVLKALTIFNDADIKLCNEE 68
G+ N+G K+N K L I+N D K C EE
Sbjct: 304 GKTNIGCYMTGIKNNQDKTLYIYNVCDHKKCYEE 337
>ref|NP_223184.1| GTP-binding protein [Helicobacter pylori J99]
Length = 301
Score = 24.3 bits (51), Expect = 0.83
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 35 GLVILVGENNVGKSNVLKAL 54
G V L+G+ N GKS +L L
Sbjct: 6 GFVALIGKPNAGKSTLLNTL 25
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 23.5 bits (49), Expect = 1.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 38 ILVGENNVGKSNVLKALTIFNDADIKLCNEEDY 70
I++GE GK +V L + D IK+ Y
Sbjct: 321 IIIGEKTFGKGSVQVLLPVNKDEAIKITTARYY 353
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 23.5 bits (49), Expect = 1.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 2 EFYKRVLKLHHFRNLGRKSPVE-----LPLNSSFEKHGGLVILVGENNVGKSNVLKALTI 56
E YK +LK H+R + VE +++ F K + + K + I
Sbjct: 136 ELYKNILKQSHYRPKHFEESVERLLILQKISALFPKTTTPLEQSSLSLWAKLQDKLDILI 195
Query: 57 FNDADIKL-CNEED---YFKPHEKD 77
N D+K+ NEE+ Y++ H KD
Sbjct: 196 LNPNDVKISLNEEEMKKYYENHRKD 220
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 23.5 bits (49), Expect = 1.4
Identities = 12/54 (22%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Query: 37 VILVGENNVGKSNVLKALTIFNDADIKLCNE-EDYFKPHEKDSLLSLEEETILD 89
V L NN ++N+L + N + N+ D+ P +D ++ ++ ++ L+
Sbjct: 2453 VALPNSNNASQNNILSLSVLHNQIKMSYGNKVMDFTPPTLQDYIVGIQGQSALN 2506
>ref|NP_224034.1| DNA transfer protein [Helicobacter pylori J99]
Length = 304
Score = 23.1 bits (48), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (60%)
Query: 34 GGLVILVGENNVGKSNVLKALTIFNDADIKLCNEED 69
G +++ GE + GK+++L AL + D ++ + ED
Sbjct: 138 GHNILISGETSSGKTSLLNALLDCVNKDERVVSVED 173
>ref|NP_222751.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 742
Score = 23.1 bits (48), Expect = 1.9
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 38 ILVGENNVGKSNVLKALTI 56
+L+GE VGK+++ +AL +
Sbjct: 202 LLIGEAGVGKTSIAEALAL 220
>ref|NP_224181.1| putative [Helicobacter pylori J99]
Length = 367
Score = 22.7 bits (47), Expect = 2.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 41 GENNVGKSNVLKAL 54
G+N+ GK+N+L+AL
Sbjct: 29 GQNDAGKTNLLEAL 42
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 22.7 bits (47), Expect = 2.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 34 GGLVILVGENNVGKSNVLKALTI 56
G + +VG+ N GKS++L A+ +
Sbjct: 224 GHALSIVGKPNAGKSSLLNAMLL 246
>ref|NP_223691.1| putative S/N-oxide reductase [Helicobacter pylori J99]
Length = 796
Score = 22.7 bits (47), Expect = 2.4
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 60 ADIKLCNEEDYFKP-HEKDS 78
AD+ CN DYF P H DS
Sbjct: 209 ADLFKCNRIDYFVPNHVNDS 228
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 22.7 bits (47), Expect = 2.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 37 VILVGENNVGKSNVLKAL 54
+ L+G N VGKS + K L
Sbjct: 350 IALIGPNGVGKSTLCKIL 367
Score = 21.9 bits (45), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 39 LVGENNVGKSNVLKALT 55
L+G N GKS LK L+
Sbjct: 32 LIGANGAGKSTFLKILS 48
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 22.7 bits (47), Expect = 2.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 37 VILVGENNVGKSNVLKAL 54
V+L+G VGKS+++ AL
Sbjct: 48 VLLMGATGVGKSSLINAL 65
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 22.7 bits (47), Expect = 2.4
Identities = 15/56 (26%), Positives = 25/56 (43%), Gaps = 3/56 (5%)
Query: 28 SSFEKHGGLVILVGENNVGKSNVLKALTIF---NDADIKLCNEEDYFKPHEKDSLL 80
S K G + +G VGK+ KAL F +D ++ + +Y + H L+
Sbjct: 592 SDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEKHAISRLI 647
Score = 21.2 bits (43), Expect = 7.0
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 16 LGRKSPVELPLNSSFEKHGGLVILVGENNVGKSNVLKAL 54
+GR + + K IL+GE VGK+ V++ L
Sbjct: 179 IGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGL 217
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 22.7 bits (47), Expect = 2.4
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 21 PVELPLNSSFEKHGGLVI 38
PVE S+F KH G+ +
Sbjct: 199 PVEFGFRSNFSKHSGIEV 216
>ref|NP_223234.1| putative [Helicobacter pylori J99]
Length = 366
Score = 22.3 bits (46), Expect = 3.2
Identities = 10/17 (58%), Positives = 12/17 (69%)
Query: 39 LVGENNVGKSNVLKALT 55
+VG NVGKS+ ALT
Sbjct: 7 IVGLPNVGKSSTFNALT 23
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 22.3 bits (46), Expect = 3.2
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 37 VILVGENNVGKSNVLKAL 54
V+LVG VGK+ + KAL
Sbjct: 198 VLLVGPPGVGKTMIAKAL 215
>ref|NP_222930.1| DNA REPAIR PROTEIN [Helicobacter pylori J99]
Length = 448
Score = 22.3 bits (46), Expect = 3.2
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 19 KSPVELPLNSSFEKHGGLVILVGENNVGKSNVL 51
+S +++ L K GGL ++ G VGKS +L
Sbjct: 75 QSELDIVLGGGIAK-GGLYLVGGSPGVGKSTLL 106
>ref|NP_222760.1| GDP-D-mannose dehydratase [Helicobacter pylori J99]
Length = 381
Score = 22.3 bits (46), Expect = 3.2
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 22 VELPLNSSFEKHGGLVILVGENNVGKSNVLKA-LTIFNDADIKLCNEEDYFKPHEKDSLL 80
++L ++ K GL+ V E ++N L+ L+ I + +E YF+P E D LL
Sbjct: 274 IDLEFQNTGIKEIGLIKSVDEK---RANALQLNLSHLKTGKIVVRIDEHYFRPTEVDLLL 330
>ref|NP_224193.1| putative [Helicobacter pylori J99]
Length = 208
Score = 21.6 bits (44), Expect = 5.4
Identities = 7/18 (38%), Positives = 13/18 (71%)
Query: 37 VILVGENNVGKSNVLKAL 54
++++G +NVGKS + L
Sbjct: 27 MVILGRSNVGKSTFINTL 44
>ref|NP_223702.1| putative [Helicobacter pylori J99]
Length = 616
Score = 21.6 bits (44), Expect = 5.4
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 23 ELPLNSSFEKHGGLVILVGE 42
+LP+ ++EK GG I +G+
Sbjct: 141 DLPVLKTWEKDGGAFITMGQ 160
>ref|NP_223424.1| MOLYBDOPTERIN-GUANINE DINUCLEOTIDE BIOSYNTHESIS PROTEIN A
[Helicobacter pylori J99]
Length = 209
Score = 21.6 bits (44), Expect = 5.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 4 YKRVLKLHHFRNLGRKSPVELPLNSSFEKHGGL 36
Y R+LKL + K EL EK GGL
Sbjct: 47 YTRLLKLFKQVIISAKKSYELNAPYLLEKEGGL 79
>ref|NP_223235.1| AMINOPEPTIDASE [Helicobacter pylori J99]
Length = 496
Score = 21.6 bits (44), Expect = 5.4
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 67 EEDYFKPHEKDSLLSLEEETILDHKITGFSCVD-LRIQSKEII 108
E D FKP++K+S+L + HK +C + L +KE +
Sbjct: 122 EYDTFKPNKKESVLKEVIVALELHKHCEKTCANSLEKSAKEAL 164
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 21.6 bits (44), Expect = 5.4
Identities = 10/39 (25%), Positives = 20/39 (50%)
Query: 39 LVGENNVGKSNVLKALTIFNDADIKLCNEEDYFKPHEKD 77
++ E + + + AL++FN K+ + +PH KD
Sbjct: 32 MLEEKKIKNNQLAFALSLFNGVLEKINEIDALIEPHLKD 70
>ref|NP_223339.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 ALPHA CHAIN [Helicobacter
pylori J99]
Length = 788
Score = 21.2 bits (43), Expect = 7.0
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 81 SLEEETILDHKITGFSC 97
S++E+++LD + F+C
Sbjct: 771 SIDEKSVLDRSVECFNC 787
>ref|NP_223214.1| GLUTAMATE RACEMASE [Helicobacter pylori J99]
Length = 255
Score = 21.2 bits (43), Expect = 7.0
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 69 DYFKPHEKDSLL 80
D+FKPHE + L+
Sbjct: 56 DFFKPHEIELLI 67
>ref|NP_223100.1| putative TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 223
Score = 20.8 bits (42), Expect = 9.2
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 31 EKHGGLVILVGENN 44
EKH +V+LV +N
Sbjct: 64 EKHSSIVVLVSSDN 77
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 20.8 bits (42), Expect = 9.2
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 98 VDLRIQSKEI 107
+DLRIQSKE+
Sbjct: 1 MDLRIQSKEV 10
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 20.8 bits (42), Expect = 9.2
Identities = 9/21 (42%), Positives = 11/21 (51%)
Query: 5 KRVLKLHHFRNLGRKSPVELP 25
K L +HHF NL +LP
Sbjct: 246 KLYLGMHHFPNLKENLEFKLP 266
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 20.8 bits (42), Expect = 9.2
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 68 EDYFKPHEKDSLLSLEEETILDHKIT 93
+DY K +D+L S + T + ++IT
Sbjct: 1020 KDYVKIRGEDNLFSYTKVTSVGYRIT 1045
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,162
Number of Sequences: 1491
Number of extensions: 5547
Number of successful extensions: 47
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 40
length of query: 108
length of database: 494,079
effective HSP length: 66
effective length of query: 42
effective length of database: 395,673
effective search space: 16618266
effective search space used: 16618266
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)