BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644654|ref|NP_206823.1| hypothetical protein
[Helicobacter pylori 26695]
(190 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222741.1| putative [Helicobacter pylori J99] 350 1e-98
ref|NP_224205.1| putative [Helicobacter pylori J99] 51 2e-08
ref|NP_223505.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 27 0.45
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 27 0.45
ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERME... 25 1.3
ref|NP_223874.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_223641.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_224192.1| putative [Helicobacter pylori J99] 23 6.6
ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PRO... 23 6.6
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 23 6.6
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 6.6
ref|NP_223090.1| putative [Helicobacter pylori J99] 23 6.6
>ref|NP_222741.1| putative [Helicobacter pylori J99]
Length = 191
Score = 350 bits (899), Expect = 1e-98
Identities = 174/188 (92%), Positives = 176/188 (93%)
Query: 1 MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARF 60
MKKFLFKQKFCESLPKSFSKTLLALSLGLILLG+F PFPKVPK SVPL HFTEHYARF
Sbjct: 1 MKKFLFKQKFCESLPKSFSKTLLALSLGLILLGVFIPFPKVPKHQSVPLALHFTEHYARF 60
Query: 61 IPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLGERPYGGNFN 120
IPTILSVAIPLIQRDAVGLFQVANASIATT LTH TKRALNHVTINDQRLGERPYGGNFN
Sbjct: 61 IPTILSVAIPLIQRDAVGLFQVANASIATTFLTHATKRALNHVTINDQRLGERPYGGNFN 120
Query: 121 MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC 180
MPSGHSSMVGLAVAFLMRRYS KKY WLLPL+PLTMLARIYLDMHTIGAVL GLG GMLC
Sbjct: 121 MPSGHSSMVGLAVAFLMRRYSVKKYLWLLPLIPLTMLARIYLDMHTIGAVLAGLGTGMLC 180
Query: 181 VSLFTSPK 188
V LFTSPK
Sbjct: 181 VGLFTSPK 188
>ref|NP_224205.1| putative [Helicobacter pylori J99]
Length = 198
Score = 50.8 bits (120), Expect = 2e-08
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 59 RFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTINDQRLG--ERPYG 116
RF+P + + L RD GL ++A ++ T + + K A + + R+G +RP
Sbjct: 38 RFLPIFVGT-VSLAMRDYRGLGELAVGTLVTQGVIYGLKGAFSTAHKDGARVGFAKRPCC 96
Query: 117 GNFN-MPSGHSSMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLARIYLDMHTIGAVLTGLG 175
++ MPSGH+ A F+ RY +K ++ L LT +R+ HTI V G
Sbjct: 97 NSWRGMPSGHAGGAFSAAGFVYYRYGWKPALPVIALAILTDTSRVVAGQHTILQVTIGSL 156
Query: 176 VGMLCVSLFTSPKKP 190
+ LFTS KP
Sbjct: 157 IAWGFAYLFTSRYKP 171
>ref|NP_223505.1| putative [Helicobacter pylori J99]
Length = 228
Score = 27.3 bits (59), Expect = 0.27
Identities = 23/84 (27%), Positives = 37/84 (43%), Gaps = 11/84 (13%)
Query: 111 GERPYGGNFNMPSGHS-------SMVGLAVAFLMRRYSFKKYFWLLPLVPLTMLA--RIY 161
GE + F+ PSGH+ + L + + K ++ L + ++A R+Y
Sbjct: 131 GELVFAHGFSFPSGHALASALFYGSLALLLCYSNANNRIKTIGAIILLFWIFLMAYDRVY 190
Query: 162 LDMHTIGAVLTG--LGVGMLCVSL 183
L +H VL G LG+ C SL
Sbjct: 191 LGVHYPSDVLGGFLLGIAWSCCSL 214
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 26.6 bits (57), Expect = 0.45
Identities = 19/37 (51%), Positives = 23/37 (61%), Gaps = 7/37 (18%)
Query: 5 LFKQKFCESLPKSFSKTLLALSLG------LILLGIF 35
LF+ K CES+ ++ K LLALSLG L L GIF
Sbjct: 138 LFEDKPCESVESAYMK-LLALSLGKAPLRSLNLEGIF 173
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 26.6 bits (57), Expect = 0.45
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 145 YFWLLPLVPLTMLARIYLDMHTIGAVLTGLGVGMLCVSLF 184
+FW+L L+ + +Y D ++ L G+LCV LF
Sbjct: 6 FFWILFLIGFYWMLYLYQDF-----LMDALIAGLLCVGLF 40
>ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN [Helicobacter
pylori J99]
Length = 237
Score = 25.0 bits (53), Expect = 1.3
Identities = 16/76 (21%), Positives = 33/76 (43%)
Query: 5 LFKQKFCESLPKSFSKTLLALSLGLILLGIFAPFPKVPKQPSVPLMFHFTEHYARFIPTI 64
+ K FC SLP + +L L + +++ I PK ++ +F R P +
Sbjct: 31 MLKAAFCISLPLAIISFILGLLIAIVVALIKIAPPKHFMHKALLAGVNFYVSIIRGTPLL 90
Query: 65 LSVAIPLIQRDAVGLF 80
+ + + A+G++
Sbjct: 91 VQIVVVFYGLPALGVY 106
>ref|NP_223874.1| putative [Helicobacter pylori J99]
Length = 415
Score = 23.1 bits (48), Expect = 5.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 19 SKTLLALSLGLILLGIFAPFPKVP 42
+K++L LSLGL++ ++ K+P
Sbjct: 136 AKSVLVLSLGLLISYLYIKTQKIP 159
>ref|NP_223641.1| putative [Helicobacter pylori J99]
Length = 268
Score = 23.1 bits (48), Expect = 5.0
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 97 KRALNHVTINDQRLGERPYG------GNFNMPSGHSSMVGLAVAFLMR 138
K +++H+ ++R E+ + G+F++ S SS V+FL R
Sbjct: 151 KNSVSHIKSKEKRELEKEWAKPSVSFGSFSLLSSSSSFSSFEVSFLSR 198
>ref|NP_224192.1| putative [Helicobacter pylori J99]
Length = 147
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 4 FLFKQKFCESLPKSFSKTLLALSLGLILLGIFAPF 38
FLFK + + ++SLGL LG+FA F
Sbjct: 97 FLFKTLHAFLVYYLYLSCFFSVSLGLKTLGLFALF 131
>ref|NP_224144.1| putative IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 841
Score = 22.7 bits (47), Expect = 6.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 149 LPLVPLTMLARIYLDMHTIGAVLTGLGVGMLC 180
L + T L R YL+ + +G G G LC
Sbjct: 436 LRFMTTTFLQRQYLNTNECATKTSGEGAGFLC 467
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 54 TEHYARFIPTILSVAIPLIQRDAVGLFQVANASIATTLLTHTTKRALNHVTI 105
++HYA+ + + L++ VGL +A A + H + L HV++
Sbjct: 8 SKHYAKALKNHTKSDLALLEEIVVGLKNLAEA-----IKLHKLNQVLAHVSL 54
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.7 bits (47), Expect = 6.6
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 37 PFPKVPKQPSVPLMFHFTEHYARFIPTILSVAIPLIQRDAVGLFQV 82
P+ +P Q + L ++Y+ + ++LS+ P + D VGL ++
Sbjct: 61 PYFLLPFQ--IELAIFIAQYYSANLSSVLSLFAPFKECDLVGLEKI 104
>ref|NP_223090.1| putative [Helicobacter pylori J99]
Length = 440
Score = 22.7 bits (47), Expect = 6.6
Identities = 13/32 (40%), Positives = 18/32 (55%)
Query: 4 FLFKQKFCESLPKSFSKTLLALSLGLILLGIF 35
FL K ES+ S K + L LG++L G+F
Sbjct: 379 FLAHLKDDESVGSSGLKLGIGLHLGMLLQGVF 410
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.328 0.142 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,506
Number of Sequences: 1491
Number of extensions: 7771
Number of successful extensions: 36
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 14
length of query: 190
length of database: 494,079
effective HSP length: 73
effective length of query: 117
effective length of database: 385,236
effective search space: 45072612
effective search space used: 45072612
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)