BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644845|ref|NP_207015.1| hypothetical protein
[Helicobacter pylori 26695]
(380 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222924.1| putative [Helicobacter pylori J99] 699 0.0
ref|NP_224076.1| putative amino acid abc transporter, ATP-b... 27 0.87
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 27 1.1
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 27 1.1
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 26 1.9
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 25 2.5
ref|NP_223383.1| putative [Helicobacter pylori J99] 25 2.5
ref|NP_224151.1| putative [Helicobacter pylori J99] 24 5.7
ref|NP_223120.1| putative [Helicobacter pylori J99] 24 5.7
ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pyl... 24 7.4
ref|NP_223787.1| putative [Helicobacter pylori J99] 24 7.4
ref|NP_223621.1| putative cation efflux system protein [Hel... 24 7.4
ref|NP_223611.1| putative [Helicobacter pylori J99] 24 7.4
ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (... 24 7.4
ref|NP_223009.1| putative [Helicobacter pylori J99] 24 7.4
>ref|NP_222924.1| putative [Helicobacter pylori J99]
Length = 385
Score = 699 bits (1803), Expect = 0.0
Identities = 335/386 (86%), Positives = 358/386 (91%), Gaps = 11/386 (2%)
Query: 1 MGLKNKIKGFIKERMPFVVRYVRSLKGAKNIYDE---------INHEIKEMLEAKKLHSL 51
MGLKNKIKGF+KERMPFV+R VR LKGAK+ ++ IN EIKEMLEAKKLH L
Sbjct: 1 MGLKNKIKGFVKERMPFVMRCVRGLKGAKDTHENAHDRDAYCGINREIKEMLEAKKLHFL 60
Query: 52 QEKALFNHDHQESVFLAIASLNNESFIERNKSIYKNSSLNYNYGGGGHLEDRVIHPTLTL 111
QEKALFNHDHQESVFLAIASLNNESFIE NKSIYKNSSLNYNYGG HLEDRVIHPTLTL
Sbjct: 61 QEKALFNHDHQESVFLAIASLNNESFIEYNKSIYKNSSLNYNYGG--HLEDRVIHPTLTL 118
Query: 112 PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDD 171
PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPA+QRGVIGFNDCDD
Sbjct: 119 PNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKNEIVTLEESLFSMLPAVQRGVIGFNDCDD 178
Query: 172 GSKEVILEFCKKFPSFIPISYPYEVMLKDCPSLWHQLYHYSNYTLSFIPKNEWVIKIDGD 231
GSKEV+LEFCKKFPSFIPISYPYEV+LKDCPSLWHQLYHY NYTLSFIPKNEWV+KID D
Sbjct: 179 GSKEVVLEFCKKFPSFIPISYPYEVILKDCPSLWHQLYHYCNYTLSFIPKNEWVVKIDCD 238
Query: 232 HVYDAKKLYESFYIPKSIKEVVMYSRINFVVQDFEVFVCNSGDFGFLDAWGDQWLFYNDC 291
H+YDAKKLY+SFYIPK+IKEVVMYSRINFVV+DFEVFV N GDFGFLDAWGD WL YNDC
Sbjct: 239 HIYDAKKLYKSFYIPKNIKEVVMYSRINFVVRDFEVFVRNDGDFGFLDAWGDHWLLYNDC 298
Query: 292 EPFEIWQHNDDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKHHA 351
EPFEIW++ND+ YE+LKLKDKHHIKDKE++QWHFPLAKKRRNAIV +DLIPL+EFKK HA
Sbjct: 299 EPFEIWRYNDESYEVLKLKDKHHIKDKEMVQWHFPLAKKRRNAIVYDDLIPLEEFKKRHA 358
Query: 352 DLIGTKIEESMLDEKRILEMYQKFNL 377
DLIGT+IEESMLDEKRILE+YQKF L
Sbjct: 359 DLIGTRIEESMLDEKRILEVYQKFRL 384
>ref|NP_224076.1| putative amino acid abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 261
Score = 26.9 bits (58), Expect = 0.87
Identities = 20/63 (31%), Positives = 31/63 (48%), Gaps = 3/63 (4%)
Query: 129 PKSPLNPWAFIRVKNEIVTLEESLFSMLPAIQRGVIGFNDCDDG---SKEVILEFCKKFP 185
P S L+P++ + I+TL+ESL + I + +DC D K+ +LEF
Sbjct: 173 PTSGLDPYSAGKFDELIMTLKESLQLTVVMITHDLDSVHDCVDRFIMLKDGLLEFNGDLK 232
Query: 186 SFI 188
FI
Sbjct: 233 DFI 235
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 26.6 bits (57), Expect = 1.1
Identities = 21/71 (29%), Positives = 35/71 (48%), Gaps = 5/71 (7%)
Query: 29 KNIYDEINH-EIKEMLEAKKLHSLQEKALFNHDHQESVFLAIASLNNESFIERN----KS 83
K++ DE+ + +L+ K LH+L +K FN + VF+ + +N + E N KS
Sbjct: 2408 KSLQDELKKLGMGSLLKPKGLHNLWQKGNFNFVAKNHVFVNNSLFSNATGGELNFVAGKS 2467
Query: 84 IYKNSSLNYNY 94
I N N+
Sbjct: 2468 IIFNGKNTINF 2478
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 26.6 bits (57), Expect = 1.1
Identities = 32/134 (23%), Positives = 55/134 (40%), Gaps = 18/134 (13%)
Query: 35 INHEIKEMLEAKKLHSLQEKALFNHDHQESVF--------LAIASLNNESFIERNKSIYK 86
+N +KE+L+ LHS+Q+ F +SV + L ++ E + K
Sbjct: 30 LNSRVKEILKESALHSMQDSLHFKVKEVQSVLENTYTSMGIVKEMLPEDTKREIKIQLLK 89
Query: 87 NSSLNYNYGGGGHL--EDRV-IHPTLTLPNPTHSGYFDYDKKSQNPKSPLNPWAFIRVKN 143
N L ++ G + +DR + TL N D K +NP NP A +KN
Sbjct: 90 NFILANSHVAGVSMFFKDREDLRLTLLRDN-------DTIKLMENPSLGSNPLAQKAMKN 142
Query: 144 EIVTLEESLFSMLP 157
+ ++ + +P
Sbjct: 143 KEISKSLPYYRKMP 156
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 25.8 bits (55), Expect = 1.9
Identities = 18/70 (25%), Positives = 40/70 (56%), Gaps = 7/70 (10%)
Query: 317 DKELMQWHFP---LAKKRRNAIVDNDLIPLKE----FKKHHADLIGTKIEESMLDEKRIL 369
D++L+ F L+ K+RN +D++L L+E +KK +L G + ++ + ++ +
Sbjct: 3 DRKLLLQDFDKVALSLKKRNHAMDDELERLREAIAHYKKQLIELEGLQAFQNKVSKEFGI 62
Query: 370 EMYQKFNLAE 379
+M QK + ++
Sbjct: 63 KMAQKMDTSD 72
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 25.4 bits (54), Expect = 2.5
Identities = 21/56 (37%), Positives = 28/56 (49%), Gaps = 9/56 (16%)
Query: 293 PFEIWQHNDDIYEILKLKDKHHIKDKELMQWHFPLAKKRRNAIVDNDLIPLKEFKK 348
PF + HN I +KDK IKDKE+ A +NA++D+ I KE K
Sbjct: 353 PFRVEYHNT-IKAKEGIKDKEGIKDKEVR------AVDEKNALLDSRRI--KEIAK 399
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 25.4 bits (54), Expect = 2.5
Identities = 15/51 (29%), Positives = 25/51 (48%), Gaps = 13/51 (25%)
Query: 214 YTLSFIPKNE-------------WVIKIDGDHVYDAKKLYESFYIPKSIKE 251
Y LSF+ K E ++I+ D +HV+ A K ++ +PK K+
Sbjct: 250 YVLSFLQKEEIKHHFFSLEIAQKFIIEKDKEHVFIAFKPQKTLSMPKDFKD 300
>ref|NP_224151.1| putative [Helicobacter pylori J99]
Length = 307
Score = 24.3 bits (51), Expect = 5.7
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 212 SNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYIPKS 248
+ + LSF + ++ IDG YD K + YI KS
Sbjct: 240 AEFCLSFCAHEDALVVIDGQATYDL-KANQPLYIQKS 275
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 24.3 bits (51), Expect = 5.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 203 SLWHQLYHYSNYTLSFIPKNEWVIKIDGDHVYDAKKLYESFYI 245
+L H +Y Y N ++ KN + ID Y FYI
Sbjct: 260 TLVHGMYQYGNTDITTSAKNAGLFLIDQTFKYKIFNFGTGFYI 302
>ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 23.9 bits (50), Expect = 7.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 30 NIYDEINHEIKEMLEAKKLHSLQE 53
N++DE++ KE LE + ++LQ+
Sbjct: 262 NLFDEMDRFFKEKLEVLEKYTLQD 285
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 23.9 bits (50), Expect = 7.4
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 29 KNIYDEINHEIKEMLEA-KKLHSLQEKAL--FNHD-HQESVFLAIASLNNESFIERNKS 83
KN+Y + E KE+LE K+ + K L F +D H +S + + L + I +K+
Sbjct: 164 KNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKN 222
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 23.9 bits (50), Expect = 7.4
Identities = 8/12 (66%), Positives = 10/12 (82%)
Query: 216 LSFIPKNEWVIK 227
+SFIPK EW +K
Sbjct: 613 ISFIPKKEWSVK 624
>ref|NP_223611.1| putative [Helicobacter pylori J99]
Length = 243
Score = 23.9 bits (50), Expect = 7.4
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 300 NDDIY--EILKLKDKHHIK--------DKELMQWHFPLAKKRRNAIVDNDLIPLKEFKKH 349
ND+ Y ILK+ + +I DK + HF A R + +++ L+ +KE
Sbjct: 75 NDEAYPGNILKILIQKNISVISMHTNFDKTHLNKHFARALLRFDGLIEKGLMLVKENANI 134
Query: 350 HADLIGTKIEESM 362
D++ KI+ S+
Sbjct: 135 EFDVLLEKIKLSL 147
>ref|NP_223474.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 272
Score = 23.9 bits (50), Expect = 7.4
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 73 NNESFIERNKSIYKNSSLNYNYGGGGHLEDRVI--HPTL 109
NN+ E K KN+ +Y G GG D++ HP +
Sbjct: 166 NNKILKELKKEKTKNNIWHYAVGLGGSTNDKIAFNHPAI 204
>ref|NP_223009.1| putative [Helicobacter pylori J99]
Length = 331
Score = 23.9 bits (50), Expect = 7.4
Identities = 13/28 (46%), Positives = 16/28 (56%), Gaps = 1/28 (3%)
Query: 75 ESFIERNKSIYKNSSLNYNYGGGGHLED 102
E FI R + Y S+LN N+G G L D
Sbjct: 149 EDFIRRMRQ-YSQSALNTNHGAWGILFD 175
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,357
Number of Sequences: 1491
Number of extensions: 23751
Number of successful extensions: 93
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 17
length of query: 380
length of database: 494,079
effective HSP length: 79
effective length of query: 301
effective length of database: 376,290
effective search space: 113263290
effective search space used: 113263290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)