BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644846|ref|NP_207016.1| hypothetical protein
[Helicobacter pylori 26695]
         (183 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222925.1|  putative [Helicobacter pylori J99]              360  e-101
ref|NP_223891.1|  putative [Helicobacter pylori J99]               25  1.6
ref|NP_223744.1|  GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic...    23  3.7
ref|NP_223598.1|  putative [Helicobacter pylori J99]               22  8.2

>ref|NP_222925.1| putative [Helicobacter pylori J99]
          Length = 183

 Score =  360 bits (925), Expect = e-101
 Identities = 174/183 (95%), Positives = 179/183 (97%)

Query: 1   MKTFEVMIQTDSKGYLDAKFGGNAPKAFLNSNGLPTYSPKISWQKVEGAQSYALELIDHD 60
           MKTFEVMIQTDS+GYLDAKFGGNAP+ FLN NGLPTYSPKISWQKVEGA+SYALELIDHD
Sbjct: 1   MKTFEVMIQTDSQGYLDAKFGGNAPRGFLNPNGLPTYSPKISWQKVEGAKSYALELIDHD 60

Query: 61  AQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGFIRSPLNESEKQRSNLN 120
           AQKVCGMPFVHWVVGNI++NVLEENASMMDKRIVQGVNSLTQGFIRS LNESEKQRSNLN
Sbjct: 61  AQKVCGMPFVHWVVGNISYNVLEENASMMDKRIVQGVNSLTQGFIRSSLNESEKQRSNLN 120

Query: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180
           NSVYIGPMPPNGDHHYLIQVYALDIPKL LKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF
Sbjct: 121 NSVYIGPMPPNGDHHYLIQVYALDIPKLELKAPFFLGDLHDKMRNHIIAIGRKEFLYKQF 180

Query: 181 VRK 183
           VRK
Sbjct: 181 VRK 183



>ref|NP_223891.1| putative [Helicobacter pylori J99]
          Length = 595

 Score = 24.6 bits (52), Expect = 1.6
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 110 NESEKQRSNLNNSVYIGPMPPNGDHHYLIQVYALDIPKLALKAPFFL 156
           ++ ++  S  +NS+Y  P  P+ +   L+  Y   + +   K P+ +
Sbjct: 340 SQYKRTTSFFSNSIYASPPLPSPEEKALLAPYEKSLDERVFKEPYIV 386



>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
          Length = 425

 Score = 23.5 bits (49), Expect = 3.7
 Identities = 25/84 (29%), Positives = 37/84 (43%), Gaps = 17/84 (20%)

Query: 45  KVEGAQSYALELIDHDAQKVCGMPFVHWVVGNIAHNVLEENASMMDKRIVQGVNSLTQGF 104
           K E  Q YA  L D        +P  H+   N AH  LE  AS +       +++L +GF
Sbjct: 357 KQEFLQPYAKLLYD-------AIPNNHY---NFAHQ-LELEASWVF------IDTLIEGF 399

Query: 105 IRSPLNESEKQRSNLNNSVYIGPM 128
           I +       +  NLN S ++ P+
Sbjct: 400 INNATPLYSYESHNLNESEFLKPL 423



>ref|NP_223598.1| putative [Helicobacter pylori J99]
          Length = 493

 Score = 22.3 bits (46), Expect = 8.2
 Identities = 11/32 (34%), Positives = 16/32 (49%)

Query: 12  SKGYLDAKFGGNAPKAFLNSNGLPTYSPKISW 43
           SKG+L++  G   P  F   +G   +S   SW
Sbjct: 352 SKGFLNSGGGVYMPLIFFLISGFIAFSTGTSW 383



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.320    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 193,988
Number of Sequences: 1491
Number of extensions: 8415
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 183
length of database: 494,079
effective HSP length: 72
effective length of query: 111
effective length of database: 386,727
effective search space: 42926697
effective search space used: 42926697
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)