BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644847|ref|NP_207017.1| hypothetical protein
[Helicobacter pylori 26695]
(159 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222926.1| putative [Helicobacter pylori J99] 290 2e-80
ref|NP_223498.1| putative [Helicobacter pylori J99] 27 0.26
ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Heli... 27 0.34
ref|NP_223629.1| putative [Helicobacter pylori J99] 25 0.77
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 1.0
ref|NP_223440.1| putative [Helicobacter pylori J99] 25 1.3
ref|NP_222981.1| putative [Helicobacter pylori J99] 23 2.9
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 23 3.8
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 23 5.0
ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori... 23 5.0
ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 23 5.0
ref|NP_223645.1| putative [Helicobacter pylori J99] 23 5.0
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 5.0
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 23 5.0
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 6.5
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 22 6.5
ref|NP_223014.1| putative [Helicobacter pylori J99] 22 6.5
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 22 6.5
ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter... 22 8.5
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 22 8.5
ref|NP_223713.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223590.1| putative [Helicobacter pylori J99] 22 8.5
ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFE... 22 8.5
>ref|NP_222926.1| putative [Helicobacter pylori J99]
Length = 161
Score = 290 bits (741), Expect = 2e-80
Identities = 145/160 (90%), Positives = 155/160 (96%), Gaps = 1/160 (0%)
Query: 1 MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPT-QEASNKFFKSVAQGMELA 59
+V+IERMES+INRLS KIDALLEQQK+VISLLETYLSVY T QEASNK FK ++QGMELA
Sbjct: 2 VVTIERMESRINRLSAKIDALLEQQKKVISLLETYLSVYSTPQEASNKLFKGISQGMELA 61
Query: 60 PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGI 119
PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFN+PKPII+TALYNL+GI
Sbjct: 62 PEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNIPKPIIVTALYNLKGI 121
Query: 120 KPTKKEVAKQLQKLYVWEKRYQQGGIDALKDRRGRPLKKP 159
KPTKKEVAKQLQKLYVWE+RYQQGGIDALKDRRGRPLKKP
Sbjct: 122 KPTKKEVAKQLQKLYVWERRYQQGGIDALKDRRGRPLKKP 161
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 26.9 bits (58), Expect = 0.26
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 10/72 (13%)
Query: 65 EDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFN---------VPKPIIITALYN 115
E ++K L++LQ + + TK++Q+ ++ + +QR VP P I+ AL +
Sbjct: 35 EKQDKDLFLLQVGNRIIPTKSEQELKINQPYFAIMQRNQLGDIVLKNLVPAPKILDALDD 94
Query: 116 LRGIKPTK-KEV 126
L I+ K KE+
Sbjct: 95 LPVIEMKKLKEI 106
>ref|NP_223047.1| 1-DEOXYXYLULOSE-5-PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 618
Score = 26.6 bits (57), Expect = 0.34
Identities = 14/37 (37%), Positives = 22/37 (58%), Gaps = 3/37 (8%)
Query: 112 ALYNLRGIKPTKKEVAKQL---QKLYVWEKRYQQGGI 145
AL +LR +KP ++ + QKLYV+ Y+ GG+
Sbjct: 524 ALLDLRFLKPLDHNLSAIIAPYQKLYVFSDNYKLGGV 560
>ref|NP_223629.1| putative [Helicobacter pylori J99]
Length = 487
Score = 25.4 bits (54), Expect = 0.77
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 61 EIAQED--EEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRG 118
+I+QE+ +E R Y + K + Q+K LE ++ ++ G
Sbjct: 50 KISQEELAQEYRRLKDAYAESIPDFKELTEDQIKAMHLEKSALDSLINQALLRNFALDLG 109
Query: 119 IKPTKKEVAKQLQKLYVWEK 138
+ TK+EVAK+++K V++K
Sbjct: 110 LGATKQEVAKEIRKTNVFQK 129
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.0 bits (53), Expect = 1.0
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 1 MVSIERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGME 57
MV +++ +++ + ++ ++EQ K + L+T + P E + K +K + G++
Sbjct: 4 MVDLKKFVTELGKTQKELKNVIEQAKDIGLELKTNFKMTP--EQAGKLYKYIVDGIK 58
>ref|NP_223440.1| putative [Helicobacter pylori J99]
Length = 184
Score = 24.6 bits (52), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 120 KPTKKEVAKQLQKLYVWEKRYQQGGIDALKDR 151
KP KKE+ +++ V+E Q I LKD+
Sbjct: 72 KPLKKEIYMNDKEVVVYEPNLFQATITPLKDK 103
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 23.5 bits (49), Expect = 2.9
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 83 TKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGIKPTKKEVAKQ 129
T K+ Q K Q PK + + A+Y+ + KK++ K+
Sbjct: 269 TAQKKFDQASKQASLIYQERKDPKFLGLEAIYHYESLSANKKKLTKE 315
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 23.1 bits (48), Expect = 3.8
Identities = 18/63 (28%), Positives = 31/63 (48%), Gaps = 12/63 (19%)
Query: 86 KQDSQLKKDCLEFIQRFNVPKPIIITALY---NLRGIKPTKKEVAKQLQKLY--VWEKRY 140
K LK + +++I I IT ++ N+ + +KKE+ K+L LY E+
Sbjct: 161 KYSQALKSNYIQYIS-------IKITTIFSQINILDFEYSKKEIVKRLDALYALALEEEK 213
Query: 141 QQG 143
+QG
Sbjct: 214 KQG 216
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 22.7 bits (47), Expect = 5.0
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 5 ERMESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELAPEIA 63
++ +S I LS + + ++ + + ++ + ++ +FF+ LA EIA
Sbjct: 519 DKTKSNIEELSARDSTICVLSSEILEIADDFIQLEESESYMEEFFRMNLAMQLLALEIA 577
>ref|NP_223909.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 100
Score = 22.7 bits (47), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (57%)
Query: 125 EVAKQLQKLYVWEKRYQQGGIDALKDRRG 153
EVA L + +W K+Y+ ID+L +G
Sbjct: 72 EVAIGLGLVILWFKKYKSLDIDSLNAMKG 100
>ref|NP_223732.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 378
Score = 22.7 bits (47), Expect = 5.0
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 66 DEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFI-----QRFNVPKPIIITALYNLRGIK 120
DEE + VL+ L+ +T+ K ++ EF+ FN ++T N
Sbjct: 12 DEEDKKAVLEVLNSKQLTQGKYSLLFEEALCEFLGVKHALAFNSATSALLTLYRNFSDFN 71
Query: 121 PTKKEV 126
+ E+
Sbjct: 72 ADRNEI 77
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.7 bits (47), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 8 ESKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVA 53
++K++++ K DA+LE+Q I + + + EA FK++A
Sbjct: 1496 KNKLDKIRAKYDAILEKQGSHIDISQMGIDNLIVDEA--HLFKNLA 1539
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 22.7 bits (47), Expect = 5.0
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 6/77 (7%)
Query: 58 LAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLR 117
L PE ++ EE + V YL V KN+ + +K+C E + K + AL L+
Sbjct: 637 LTPEAKKKLEEAKKSVRAYLDCVSKAKNEAE---RKEC-EKLLTPEAKKLLENQALDCLK 692
Query: 118 GIK--PTKKEVAKQLQK 132
K +KE K L K
Sbjct: 693 NAKTDEERKECLKDLPK 709
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 22.7 bits (47), Expect = 5.0
Identities = 13/45 (28%), Positives = 23/45 (50%)
Query: 11 INRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQG 55
I +S AL ++ K +SL E ++Y T + N+ +K + G
Sbjct: 403 IKAISASKLALEDEYKPKVSLDEVIATMYATGKDMNEKYKETSLG 447
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.3 bits (46), Expect = 6.5
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 22 LEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGME 57
L++ KR+ + Y T + KF+K + Q ++
Sbjct: 148 LKEDKRIKKFYKNYAKKEGTDSSKPKFYKDLEQFLQ 183
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 22.3 bits (46), Expect = 6.5
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 36 LSVYPTQEASNKFFKSVAQGMELAPEIAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDC 95
LSV + F + + M + E++ + E +RL LQY + N+ LK D
Sbjct: 135 LSVLDDKNYLELFNLAKSLNMSVLTEVSNQQEIERLLKLQY--DIIGINNRDLHTLKTDI 192
Query: 96 LEFIQ-RFNVPKPIII 110
++ R +PK II
Sbjct: 193 FHTLELRPLLPKDAII 208
>ref|NP_223014.1| putative [Helicobacter pylori J99]
Length = 294
Score = 22.3 bits (46), Expect = 6.5
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 113 LYNLRGIKPTKKEVAKQLQKLYVW---EKRYQQG 143
LY+ I P K ++ + +K+Y+W + R+++G
Sbjct: 111 LYDSAYIIPPKGKIVGKHRKIYLWGDEKSRFKRG 144
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 22.3 bits (46), Expect = 6.5
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 84 KNKQDSQLKKDCLEFIQRFNVPKPIIITALYNLRGI 119
KN ++ +K L++ +R N K +I + + G+
Sbjct: 75 KNSDNATARKMALDYFKRINDDKGMIYMVVVDKNGV 110
>ref|NP_223913.1| FLAGELLAR FUNCTIONAL PROTEIN [Helicobacter pylori J99]
Length = 803
Score = 21.9 bits (45), Expect = 8.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 62 IAQEDEEKRLYVLQYLSHVDITKNKQDSQLKKDCLEFIQR 101
++ ED +K LY+ L + K K + L+K C++ Q+
Sbjct: 743 LSLEDHQKALYLQSSLLDLTNQKAKSKASLEK-CVQLKQK 781
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 21.9 bits (45), Expect = 8.5
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 14 LSTKIDALLEQQKRVISLLETYLSVYPTQEASNKFFKSVAQGMELA 59
LS + E Q +IS TY+ + +KFF G+ A
Sbjct: 125 LSASLYGSQESQSIIISTYGTYMDLLLNAYNGDKFFAGFNLGIAFA 170
>ref|NP_223713.1| putative [Helicobacter pylori J99]
Length = 75
Score = 21.9 bits (45), Expect = 8.5
Identities = 12/39 (30%), Positives = 19/39 (47%)
Query: 9 SKINRLSTKIDALLEQQKRVISLLETYLSVYPTQEASNK 47
S +N+L KID L+E+ ++ L T A N+
Sbjct: 5 SLLNQLGAKIDELIEKIQKQEEELSALRQANTTLNAQNE 43
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 21.9 bits (45), Expect = 8.5
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 71 LYVLQYLSHVDITKNKQDSQLKKDCLEFIQRFNV 104
+Y+L L++ K+K + K+ L+F++ +
Sbjct: 58 VYILSSLAYFYFLKSKMNENDKEQALKFVRNAQI 91
>ref|NP_223311.1| UDP-N-ACETYLGLUCOSAMINE ENOLPYRUVYLTRANSFERASE [Helicobacter pylori
J99]
Length = 422
Score = 21.9 bits (45), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 5 ERMESKINRLSTKIDALLEQ 24
ER+E K+N L K+ L E+
Sbjct: 403 ERLEDKVNALGAKVLRLKEK 422
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,679
Number of Sequences: 1491
Number of extensions: 6962
Number of successful extensions: 39
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 24
length of query: 159
length of database: 494,079
effective HSP length: 71
effective length of query: 88
effective length of database: 388,218
effective search space: 34163184
effective search space used: 34163184
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)