BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644850|ref|NP_207020.1| hypothetical protein
[Helicobacter pylori 26695]
(73 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222929.1| putative [Helicobacter pylori J99] 136 7e-35
ref|NP_223229.1| putative [Helicobacter pylori J99] 47 6e-08
ref|NP_224197.1| putative Outer membrane protein [Helicobac... 27 0.10
ref|NP_223176.1| putative [Helicobacter pylori J99] 23 1.1
ref|NP_223600.1| putative [Helicobacter pylori J99] 23 1.5
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 1.5
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 23 1.5
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 22 1.9
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 1.9
ref|NP_224010.1| putative [Helicobacter pylori J99] 22 2.5
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 2.5
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 22 2.5
ref|NP_223662.1| putative [Helicobacter pylori J99] 21 4.3
ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [H... 21 5.6
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 21 5.6
ref|NP_223289.1| putative [Helicobacter pylori J99] 20 7.3
ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEAS... 20 9.5
ref|NP_223526.1| putative [Helicobacter pylori J99] 20 9.5
ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicob... 20 9.5
ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac... 20 9.5
>ref|NP_222929.1| putative [Helicobacter pylori J99]
Length = 86
Score = 136 bits (343), Expect = 7e-35
Identities = 69/73 (94%), Positives = 70/73 (95%)
Query: 1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
M+ TENTDET LR TKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY
Sbjct: 1 MKTTENTDETHLRETKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY 60
Query: 61 IKRYILKALRKIE 73
IKRYILKALRKIE
Sbjct: 61 IKRYILKALRKIE 73
>ref|NP_223229.1| putative [Helicobacter pylori J99]
Length = 81
Score = 47.4 bits (111), Expect = 6e-08
Identities = 27/58 (46%), Positives = 39/58 (66%), Gaps = 2/58 (3%)
Query: 14 GTKN-KLGRKPKA-DANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYILKAL 69
G KN K GRK A D K+ +V+ Y S E++ L ++A+EE ESV S++KR+ILK +
Sbjct: 4 GNKNIKPGRKRVAVDELKRNFSVTFYLSKEEHDVLRRLADEEVESVNSFVKRHILKTI 61
>ref|NP_224197.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 314
Score = 26.6 bits (57), Expect = 0.10
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 16 KNKLGRKPKAD---ANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRY 64
+N++G + AD A K +V + F D+ Y+ L + EEE+ ++K+Y
Sbjct: 255 RNQIGAQTLADKLQAENKNYSVKVAFKDDLYKVLVQGFQSEEEA-RDFMKKY 305
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.1 bits (48), Expect = 1.1
Identities = 21/73 (28%), Positives = 34/73 (45%), Gaps = 4/73 (5%)
Query: 1 MEKTENTDETR--LRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVG 58
+EK E + R R K + ++PK A +L ++ YQK E+ + +EE
Sbjct: 247 IEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTL--EEKNYQKAERKFDAKEERRR 304
Query: 59 SYIKRYILKALRK 71
S +R KA +K
Sbjct: 305 SRDERKKTKATKK 317
Score = 20.0 bits (40), Expect = 9.5
Identities = 10/34 (29%), Positives = 16/34 (46%)
Query: 21 RKPKADANKKTRAVSLYFSDEQYQKLEKMANEEE 54
R+ D KKT+A E+ +K +E+E
Sbjct: 302 RRRSRDERKKTKATKKAMEFEEREKEHDERDEKE 335
>ref|NP_223600.1| putative [Helicobacter pylori J99]
Length = 337
Score = 22.7 bits (47), Expect = 1.5
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 2 EKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYI 61
EK+ NTD ++ K+G +A D+ +Q E ++ E++++ +++
Sbjct: 231 EKSLNTDTLKISELCKKVGYDKDDYLKLAQKAQKFLVPDQWFQFFEILSQEDDKAQKAFL 290
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 22.7 bits (47), Expect = 1.5
Identities = 12/51 (23%), Positives = 23/51 (44%), Gaps = 3/51 (5%)
Query: 18 KLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSY---IKRYI 65
K G+K K A+ + + + Y + + +AN E+ Y + RY+
Sbjct: 437 KEGKKNKLKAHNREKILQTYIERKAIKHFSALANIEKIQENDYNLSVNRYV 487
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 22.7 bits (47), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 48 KMANEEEESVGSYIKRYILKALRKIE 73
K A+ ++ S + IK Y L ALR I+
Sbjct: 263 KGAHRDKFSAANTIKEYFLDALRTIQ 288
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/27 (33%), Positives = 20/27 (73%)
Query: 39 SDEQYQKLEKMANEEEESVGSYIKRYI 65
+DE +++E ++NEE+E + + I++ I
Sbjct: 233 ADENSEEIEFVSNEEKEEMLAEIQKEI 259
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 22.3 bits (46), Expect = 1.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 37 YFSDEQYQKLEKMANEEEESVGSYIKRYILKALRK 71
YF + L+ EEEE+ SY + ++ALRK
Sbjct: 750 YFIPSLFGTLKLSPKEEEEAFASYGR---IRALRK 781
>ref|NP_224010.1| putative [Helicobacter pylori J99]
Length = 220
Score = 21.9 bits (45), Expect = 2.5
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 18 KLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRY 64
+ G K D + S Y++ + + K ++ + S+G +I++Y
Sbjct: 103 RFGTKDNVDYLTFLKLQSHYYAFKNHSKDQEFISNSIVSLGEFIEKY 149
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.9 bits (45), Expect = 2.5
Identities = 14/65 (21%), Positives = 27/65 (41%)
Query: 2 EKTENTDETRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYI 61
+K +NT + + + D + R S+YF + Y L ++ S+ ++
Sbjct: 237 DKEKNTLFVAVADVSEFVPKHSSLDKEARIRGFSVYFPNSVYPMLPLSLSQGACSLKAFE 296
Query: 62 KRYIL 66
KR L
Sbjct: 297 KRLAL 301
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 21.9 bits (45), Expect = 2.5
Identities = 13/29 (44%), Positives = 16/29 (54%)
Query: 34 VSLYFSDEQYQKLEKMANEEEESVGSYIK 62
VSL FS QY L K E EE+ + I+
Sbjct: 239 VSLGFSAIQYLSLNKNHQEIEENYHTLIR 267
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 21.2 bits (43), Expect = 4.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 28 NKKTRAVSLYFSDEQYQKLEKMA 50
N + A L S E+YQKLE +A
Sbjct: 132 NAEEVAKILGVSKEEYQKLENIA 154
>ref|NP_223833.1| ADP-HEPTOSE--LPS HEPTOSYLTRANSFERASE II [Helicobacter pylori J99]
Length = 349
Score = 20.8 bits (42), Expect = 5.6
Identities = 11/39 (28%), Positives = 16/39 (40%)
Query: 10 TRLRGTKNKLGRKPKADANKKTRAVSLYFSDEQYQKLEK 48
T T K+G P A R + Y+++ LEK
Sbjct: 168 THTPNTPKKIGFNPSASYGSAKRWPASYYAEVAVALLEK 206
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 20.8 bits (42), Expect = 5.6
Identities = 12/38 (31%), Positives = 18/38 (46%)
Query: 28 NKKTRAVSLYFSDEQYQKLEKMANEEEESVGSYIKRYI 65
NK R+++L E Y K N+E E I+R +
Sbjct: 585 NKDARSIALLRKYEDYLKGYADNNKEYEGYEGLIERLL 622
>ref|NP_223289.1| putative [Helicobacter pylori J99]
Length = 352
Score = 20.4 bits (41), Expect = 7.3
Identities = 10/30 (33%), Positives = 12/30 (39%)
Query: 8 DETRLRGTKNKLGRKPKADANKKTRAVSLY 37
D T K AD+N K A+ LY
Sbjct: 134 DATACANLAQMYENKKNADSNDKENALQLY 163
>ref|NP_223895.1| RIBOSOME RECYCLING FACTOR (RIBOSOME RELEASING FACTOR) (RRF)
[Helicobacter pylori J99]
Length = 185
Score = 20.0 bits (40), Expect = 9.5
Identities = 7/32 (21%), Positives = 18/32 (55%)
Query: 26 DANKKTRAVSLYFSDEQYQKLEKMANEEEESV 57
D +KK + +DE +K+++ +E+++
Sbjct: 151 DESKKAQEQIQKITDEAIKKIDESVKNKEDAI 182
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 20.0 bits (40), Expect = 9.5
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 52 EEEESVGSYIKRYILKALRKIE 73
+ EES GS K+Y ++A I+
Sbjct: 25 QAEESKGSVAKKYKIEAEYSID 46
>ref|NP_223072.1| COPPER-TRANSPORTING P-TYPE ATPASE [Helicobacter pylori J99]
Length = 745
Score = 20.0 bits (40), Expect = 9.5
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 27 ANKKTRAVSLYFSDEQYQKLEKMAN 51
AN+K ++ L+F D + + ++ N
Sbjct: 406 ANQKASSLGLFFKDAKSLEKARLVN 430
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
Length = 144
Score = 20.0 bits (40), Expect = 9.5
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 27 ANKKTRAVSLYFSDEQYQKLEK 48
A K+ V++ ++D+Q KL+K
Sbjct: 113 AEKEGDKVTVTYADDQLAKLQK 134
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.306 0.125 0.320
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,322
Number of Sequences: 1491
Number of extensions: 2845
Number of successful extensions: 21
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of query: 73
length of database: 494,079
effective HSP length: 49
effective length of query: 24
effective length of database: 421,020
effective search space: 10104480
effective search space used: 10104480
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 40 (20.0 bits)