BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644656|ref|NP_206825.1| hypothetical protein
[Helicobacter pylori 26695]
         (39 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_223670.1|  putative [Helicobacter pylori J99]               24  0.57
ref|NP_223586.1|  putative [Helicobacter pylori J99]               22  2.2

>ref|NP_223670.1| putative [Helicobacter pylori J99]
          Length = 74

 Score = 24.3 bits (51), Expect = 0.57
 Identities = 10/31 (32%), Positives = 18/31 (57%)

Query: 4  LKWKVLFLGWLHLRALKRVGCRISSRLIVRI 34
          +KW    + W++ R  KRV  R++ R+  R+
Sbjct: 8  IKWFENVVAWVNERGNKRVNKRVNKRVNKRV 38



>ref|NP_223586.1| putative [Helicobacter pylori J99]
          Length = 251

 Score = 22.3 bits (46), Expect = 2.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 23  GCRISSRLIVRIWGKSK 39
           G R+S RL +R+W   K
Sbjct: 233 GFRLSDRLHIRLWDNKK 249



  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.335    0.146    0.515 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,249
Number of Sequences: 1491
Number of extensions: 566
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 39
length of database: 494,079
effective HSP length: 15
effective length of query: 24
effective length of database: 471,714
effective search space: 11321136
effective search space used: 11321136
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 41 (20.4 bits)