BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644862|ref|NP_207032.1| conserved hypothetical
integral membrane protein [Helicobacter pylori 26695]
(176 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222940.1| putative [Helicobacter pylori J99] 324 9e-91
ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter... 29 0.082
ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99] 29 0.082
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 27 0.24
ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 0.90
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 1.5
ref|NP_223875.1| putative [Helicobacter pylori J99] 24 2.0
ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter ... 24 2.6
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 23 3.4
ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter ... 23 3.4
ref|NP_223735.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHO... 23 4.5
ref|NP_223098.1| putative [Helicobacter pylori J99] 23 4.5
ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) ... 23 4.5
ref|NP_223346.1| putative [Helicobacter pylori J99] 23 5.9
ref|NP_224030.1| putative [Helicobacter pylori J99] 22 7.6
ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYS... 22 7.6
ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99] 22 7.6
ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99] 22 7.6
ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [H... 22 10.0
ref|NP_223493.1| putative [Helicobacter pylori J99] 22 10.0
ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Heli... 22 10.0
>ref|NP_222940.1| putative [Helicobacter pylori J99]
Length = 176
Score = 324 bits (830), Expect = 9e-91
Identities = 163/176 (92%), Positives = 169/176 (95%)
Query: 1 MSAMMRYFHIYATTFFFPLALLFAVSGLSLLFGVRQDTGATIKEWVLEKSLKKEERLDFL 60
M+AMMRYFHIYATTFFFPLALLFAVSGLSLLF RQDTGA IKEWVLEKSLKKEERLDFL
Sbjct: 1 MTAMMRYFHIYATTFFFPLALLFAVSGLSLLFKARQDTGAKIKEWVLEKSLKKEERLDFL 60
Query: 61 KDFLKENHIAMPKKIEPREHRGALVIGTPLYEINLETKGDQTKIKTIERGFLGALIMLHK 120
K F+KENHIAMPKKIEPRE+RGALVIGTPLYEINLETKG QTKIKTIERGFLGALIMLHK
Sbjct: 61 KGFIKENHIAMPKKIEPREYRGALVIGTPLYEINLETKGTQTKIKTIERGFLGALIMLHK 120
Query: 121 AKVGVVFKTLLGIFCVFLLLFYVSAFLMVAFKDTKRMFISVLIGFVVFFGAIYWSL 176
AKVG+VF+ LLGIFCVFLLLFY+SAFLMVAFKDTKRMFISVLIG VVFFGAIYWSL
Sbjct: 121 AKVGIVFQALLGIFCVFLLLFYLSAFLMVAFKDTKRMFISVLIGSVVFFGAIYWSL 176
>ref|NP_223053.1| ALPHA-KETOGLUTARATE PERMEASE [Helicobacter pylori J99]
Length = 437
Score = 28.9 bits (63), Expect = 0.082
Identities = 24/84 (28%), Positives = 39/84 (45%), Gaps = 4/84 (4%)
Query: 88 TPLYEINLETKGDQTKIKTIERGFLGALIMLHKAKVGVVFKTLLGIFCVFLLLFYVSAFL 147
TP + N+ +T IK +RG L L+ KA + V T+ G C + Y+ FL
Sbjct: 219 TPQKKTNVNNT-KETHIKETQRGSLKELLNHKKALMIVFGLTMGGSLCFYTFTVYLKIFL 277
Query: 148 --MVAFKDTKRMFISVL-IGFVVF 168
+F + FI +L + + +F
Sbjct: 278 TNSSSFSPKESSFIMLLALSYFIF 301
>ref|NP_222850.1| L-lactate permease [Helicobacter pylori J99]
Length = 551
Score = 28.9 bits (63), Expect = 0.082
Identities = 30/101 (29%), Positives = 45/101 (43%), Gaps = 11/101 (10%)
Query: 83 ALVIG---TPLYEINLETKGDQTKIKTIERGFLGALIMLHKAKVGV---VFKTLLG--IF 134
A+++G +PLY L + + G +G I + VGV + + G +F
Sbjct: 144 AILVGLGLSPLYSAGLCLIANTAPVAF---GAVGIPISAMASAVGVPAILISAMTGKILF 200
Query: 135 CVFLLLFYVSAFLMVAFKDTKRMFISVLIGFVVFFGAIYWS 175
V LL+ + FLM FK K F +V I F GA + S
Sbjct: 201 FVSLLVPFFIVFLMDGFKGIKETFPAVFIAAFSFAGAQFLS 241
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 27.3 bits (59), Expect = 0.24
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 90 LYEINLETKGDQTKIKTIERGFLGALIMLHKAKVGVVFKTLLGIFCVFLLLFYVSAFLMV 149
L+ N+ + T+IK+I L H + + F T+ G+F +F +A +
Sbjct: 55 LFSENININDENTEIKSINN-----LNESHNNAINIYFSTIQGLFSLFTRA-KENAITLE 108
Query: 150 AFKDTKRMFIS 160
KD K +F++
Sbjct: 109 DLKDQKLVFLA 119
>ref|NP_224182.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 613
Score = 25.4 bits (54), Expect = 0.90
Identities = 12/17 (70%), Positives = 15/17 (87%), Gaps = 2/17 (11%)
Query: 136 VFLLLFYVSAFLMVAFK 152
+FLLLF++ FLMVAFK
Sbjct: 29 IFLLLFFI--FLMVAFK 43
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 24.6 bits (52), Expect = 1.5
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 53 KEERLDFLKDFLKENHIAMPKKIEPREHRGALVIGTPLYEINLETKGDQTKIKTIERGFL 112
KE LD+LK KEN +E + + ++ + +L+ + + I + FL
Sbjct: 53 KERILDYLKILQKEN-------LESEKEKSQNILKELEEKYHLDPSLVRNNAQKIYQRFL 105
Query: 113 GALIMLHKAKVGVVFKTLLGIFCVFL 138
A + + + + F+++L FC F+
Sbjct: 106 NAEVRI--STIDAFFQSILRKFCWFV 129
>ref|NP_223875.1| putative [Helicobacter pylori J99]
Length = 183
Score = 24.3 bits (51), Expect = 2.0
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 44 EWVLEKSLKKEERLD-FLKDFLKEN 67
E +LEKS+KKE +D ++ L+EN
Sbjct: 39 EGILEKSVKKENAIDEQARELLEEN 63
>ref|NP_223032.1| KETOL-ACID REDUCTOISOMERASE [Helicobacter pylori J99]
Length = 330
Score = 23.9 bits (50), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (58%)
Query: 47 LEKSLKKEERLDFLKDFLKENHIAMPK 73
++K LKK + F KDFL E + P+
Sbjct: 276 MQKILKKIQNGAFAKDFLLEKSLNYPR 302
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.5 bits (49), Expect = 3.4
Identities = 13/19 (68%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 47 LEKSLKKEERLDFLKDFLK 65
LEKSLKK ERL+ KD K
Sbjct: 618 LEKSLKKRERLE--KDVAK 634
>ref|NP_222922.1| CDP-DIACYLGLYCEROL SYNTHASE [Helicobacter pylori J99]
Length = 266
Score = 23.5 bits (49), Expect = 3.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 19 LALLFAVSGLSLLFGVRQDTGATIKEWVL 47
L L+ G LFGV +D GA W+L
Sbjct: 105 LPFLYPGVGFFALFGVYKDFGAVAIIWLL 133
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 23.1 bits (48), Expect = 4.5
Identities = 13/47 (27%), Positives = 24/47 (50%), Gaps = 12/47 (25%)
Query: 134 FCVFLLLFYVSAFLM------------VAFKDTKRMFISVLIGFVVF 168
F FL+LF++S+ ++ V+F D ++F+ L G + F
Sbjct: 15 FSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFF 61
>ref|NP_223107.1| 7, 8-DIHYDRO-6-HYDROXYMETHYLPTERIN-PYROPHOSPHOKINASE [Helicobacter
pylori J99]
Length = 163
Score = 23.1 bits (48), Expect = 4.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 125 VVFKTLLGIFCVFLLLFYVSAFLMVA----FKDTKRMFISVLIGF 165
++ KT LG+ F L+FY+ A FKD R +I F
Sbjct: 80 IILKTSLGLRHFFALVFYIERRFGRARKRDFKDAPRTLDIDIIAF 124
>ref|NP_223098.1| putative [Helicobacter pylori J99]
Length = 146
Score = 23.1 bits (48), Expect = 4.5
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 71 MPKKIEPREHRGALVIGTPLYEINLETKGDQTKIKTIERGFLGALIMLHKAKVGVVFKTL 130
M KKIE + +G LY+++L + +Q ++ + GA+ + +V + L
Sbjct: 1 MTKKIEEKIEGVIESLGYLLYDVSLVKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL 60
Query: 131 LGIFCVFLLLFYV 143
L + C F+ Y+
Sbjct: 61 LDV-CDFIQDAYI 72
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 675
Score = 23.1 bits (48), Expect = 4.5
Identities = 21/85 (24%), Positives = 36/85 (41%), Gaps = 12/85 (14%)
Query: 38 TGATIKEWVLEKSLKKEERLDFLKDFLKEN-HIAMPKKIEPREHRGALVIGTPLYEINLE 96
T I + +L + K+E ++ LK+F+ N H+A G + ++ L
Sbjct: 66 TSMGIVKEMLPEDTKREIKIQLLKNFILANSHVA-----------GVSMFFKDREDLRLT 114
Query: 97 TKGDQTKIKTIERGFLGALIMLHKA 121
D IK +E LG+ + KA
Sbjct: 115 LLRDNDTIKLMENPSLGSNPLAQKA 139
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 22.7 bits (47), Expect = 5.9
Identities = 11/23 (47%), Positives = 15/23 (64%)
Query: 42 IKEWVLEKSLKKEERLDFLKDFL 64
+K VL+ +L KE+ L L DFL
Sbjct: 229 LKYEVLKGALNKEQYLGLLNDFL 251
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 22.3 bits (46), Expect = 7.6
Identities = 15/43 (34%), Positives = 23/43 (52%), Gaps = 3/43 (6%)
Query: 128 KTLLGIFCVFLLLFYVSAFLMVAFKDTKRMFISVLIGFVVFFG 170
K L+ + C L Y ++ L F +K + LIGFVV++G
Sbjct: 16 KFLMFLLCNALSNAYKNSDL---FSFSKGFLGAFLIGFVVYYG 55
>ref|NP_223141.1| GLUTATHIONE-REGULATED POTASSIUM-EFFLUX SYSTEM PROTEIN [Helicobacter
pylori J99]
Length = 416
Score = 22.3 bits (46), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 19 LALLFAVSGLSLLFGVRQDTGATIKEWVLEKSLKK 53
L ++ + +GLS FG GA I + KS K
Sbjct: 222 LVIVCSAAGLSHFFGFSMSLGAFIVGMAISKSRYK 256
>ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99]
Length = 255
Score = 22.3 bits (46), Expect = 7.6
Identities = 9/17 (52%), Positives = 10/17 (57%)
Query: 153 DTKRMFISVLIGFVVFF 169
DT FI L GF +FF
Sbjct: 122 DTSLWFIQALTGFAMFF 138
>ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99]
Length = 559
Score = 22.3 bits (46), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (55%)
Query: 32 FGVRQDTGATIKEWVLEKSLKKEERLDFLKDF 63
F +R G+ + + LEK +E L FLK+F
Sbjct: 355 FVLRHMAGSYLLDDPLEKDKALKEMLGFLKNF 386
>ref|NP_224007.1| UDP-N-ACETYLGLUCOSAMINE ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 270
Score = 21.9 bits (45), Expect = 10.0
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 94 NLETKGDQTKIKTIERGFLGALIMLHKAKVGVVFKTLLG 132
+L+ KG+ +++ E + M++ G + KTL+G
Sbjct: 70 DLKYKGEYSELMVGEDNLIREFCMINPGTEGGIKKTLIG 108
>ref|NP_223493.1| putative [Helicobacter pylori J99]
Length = 201
Score = 21.9 bits (45), Expect = 10.0
Identities = 8/23 (34%), Positives = 16/23 (68%)
Query: 31 LFGVRQDTGATIKEWVLEKSLKK 53
++G+R + T+K+ VL+ S+ K
Sbjct: 135 MYGIRVNAQDTVKDMVLQNSVIK 157
>ref|NP_223081.1| GLUCOSE INHIBITED DIVISION PROTEIN B [Helicobacter pylori J99]
Length = 178
Score = 21.9 bits (45), Expect = 10.0
Identities = 11/29 (37%), Positives = 18/29 (61%)
Query: 46 VLEKSLKKEERLDFLKDFLKENHIAMPKK 74
+LE +K+ L++LK L N+I + KK
Sbjct: 75 LLEPRVKRAAFLNYLKSVLPLNNIEIIKK 103
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.146 0.433
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 180,644
Number of Sequences: 1491
Number of extensions: 8214
Number of successful extensions: 50
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 22
length of query: 176
length of database: 494,079
effective HSP length: 72
effective length of query: 104
effective length of database: 386,727
effective search space: 40219608
effective search space used: 40219608
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 45 (21.9 bits)