BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644864|ref|NP_207034.1| hypothetical protein
[Helicobacter pylori 26695]
(123 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222942.1| putative [Helicobacter pylori J99] 233 2e-63
ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter... 28 0.100
ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) ... 28 0.100
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 24 1.1
ref|NP_223245.1| putative [Helicobacter pylori J99] 24 1.1
ref|NP_223167.1| putative transporter [Helicobacter pylori ... 24 1.4
ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylo... 23 2.5
ref|NP_223442.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 23 3.2
ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 23 3.2
ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobact... 22 5.5
ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 7.2
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 21 9.3
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 21 9.3
ref|NP_223290.1| putative [Helicobacter pylori J99] 21 9.3
>ref|NP_222942.1| putative [Helicobacter pylori J99]
Length = 123
Score = 233 bits (593), Expect = 2e-63
Identities = 112/123 (91%), Positives = 115/123 (93%)
Query: 1 MRLFIALVLFWWWLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYE 60
MRL IALVLF WWL+L AKEADFISD EYG+ALYKNPRGVACAKCHGIKGEQQEITFYYE
Sbjct: 1 MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYE 60
Query: 61 KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDS 120
KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYI SL HK+ERKD
Sbjct: 61 KGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYITSLGHKDERKDP 120
Query: 121 PKP 123
KP
Sbjct: 121 SKP 123
>ref|NP_223866.1| PERIPLASMIC CYTOCHROME C-553 [Helicobacter pylori J99]
Length = 96
Score = 27.7 bits (60), Expect = 0.100
Identities = 22/74 (29%), Positives = 37/74 (49%), Gaps = 9/74 (12%)
Query: 42 CAKCHGIKGEQQEITFYYEKGEKKI--LYAPKINHLDFKTFKDALSLGKGMMPK-YNLNL 98
CA CHG+K E++ + G+ KI + + K D FK + M + L+
Sbjct: 29 CAACHGVKFEKKAL------GKSKIVNMMSEKEIEEDLMAFKSGANKNPVMTAQAKKLSD 82
Query: 99 EEIQAIYLYIISLE 112
E+I+A+ YI +L+
Sbjct: 83 EDIKALAKYIPTLK 96
>ref|NP_223613.1| GLYCEROL-3-PHOSPHATE DEHYDROGENASE (NAD+) [Helicobacter pylori J99]
Length = 312
Score = 27.7 bits (60), Expect = 0.100
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 60 EKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEE--IQAIYLYIISLEHKEE 116
EK E KI+ +N K DAL + KG P ++LE A+Y+ IS++H E
Sbjct: 21 EKNEVKIISRRDLNE-PLKKLNDAL-ISKGSAPIEQVDLERGLKAALYVIAISVQHLRE 77
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 24.3 bits (51), Expect = 1.1
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 58 YYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYII 109
+ EK +I+Y P + + + G G +PK+ ++ +I+ LY+I
Sbjct: 185 FNEKNGFEIIYTPAL-------VNEKMLFGTGQLPKFKEDVFKIENENLYLI 229
>ref|NP_223245.1| putative [Helicobacter pylori J99]
Length = 372
Score = 24.3 bits (51), Expect = 1.1
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 64 KKILYAPKI-NHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLY 107
+K L+ K+ N FKT K + P Y+LN I +Y Y
Sbjct: 308 RKELWLSKLENSNSFKTLKVLDKANEVSYPSYSLNPHFIDIVYTY 352
>ref|NP_223167.1| putative transporter [Helicobacter pylori J99]
Length = 442
Score = 23.9 bits (50), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (60%)
Query: 6 ALVLFWWWLSLNAKEADFISDLEYGMALYKN 36
A VL + +LSL+ A FI+++ G + KN
Sbjct: 38 AFVLLFLFLSLSVGAAMFIAEMLLGQSTQKN 68
>ref|NP_223470.1| FLAGELLAR MOTOR PROTEIN [Helicobacter pylori J99]
Length = 257
Score = 23.1 bits (48), Expect = 2.5
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 53 QEITFYYEKGEKKILYAPKINHLDFKTFKDALSLGK 88
Q++ Y E+ K I PK H++ + F D L K
Sbjct: 136 QDMMLYIERIAKIIQKLPKRVHINVRGFTDNTPLNK 171
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 22.7 bits (47), Expect = 3.2
Identities = 16/58 (27%), Positives = 27/58 (45%)
Query: 55 ITFYYEKGEKKILYAPKINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLE 112
+ F E+ ++L N + FK+ +L G +Y+LNL+ Q L+ LE
Sbjct: 118 VDFSKERHINEVLNDALKNINENDLFKNPFNLIVGKSLRYSLNLDLNQKADLFFTELE 175
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 22.7 bits (47), Expect = 3.2
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 71 KINHLDFKTFKDALSLGKGMMPKYNLNLEEIQAIY 105
+I H D KD ++ GK + N +E+ A+Y
Sbjct: 384 EITHGDILEVKDKIAYGKKKPQTLDENQKELVALY 418
>ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 292
Score = 22.7 bits (47), Expect = 3.2
Identities = 22/111 (19%), Positives = 47/111 (41%), Gaps = 15/111 (13%)
Query: 13 WLSLNAKEADFISDLEYGMALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKI 72
W L KE + D+ G+ L V C++CHGI + + + + + +
Sbjct: 109 WKHLGQKE---LVDMGQGIFL------VHCSQCHGITADG-----LHGSAQNLLRWDKEE 154
Query: 73 NHLD-FKTFKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKEERKDSPK 122
+D K + G MP ++ ++ +AI Y+++ ++ +P+
Sbjct: 155 GIMDTIKHGSKGMDYPAGEMPAIEMDEKDAKAIASYVMAELSSVKKTKNPQ 205
>ref|NP_223500.1| PHOSPHOMETHYLPYRIMIDINE KINASE [Helicobacter pylori J99]
Length = 269
Score = 21.9 bits (45), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 84 LSLGKGMMPKYNL---NLEEIQAI 104
LSL K ++PK NL NL E+ A+
Sbjct: 124 LSLKKRLLPKTNLLTPNLPEVYAL 147
>ref|NP_222767.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 343
Score = 21.6 bits (44), Expect = 7.2
Identities = 8/23 (34%), Positives = 13/23 (55%)
Query: 50 GEQQEITFYYEKGEKKILYAPKI 72
G +++ +Y KG+ I PKI
Sbjct: 137 GNIKDMILFYSKGKNPIFNEPKI 159
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 21.2 bits (43), Expect = 9.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 112 EHKEERKDSPK 122
E+K+ RKD+PK
Sbjct: 82 EYKQNRKDAPK 92
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 21.2 bits (43), Expect = 9.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 80 FKDALSLGKGMMPKYNLNLEEIQAIYLYIISLEHKE 115
FK KG + YN EEIQ + + L+ KE
Sbjct: 547 FKSIALYEKGSV--YNSKREEIQKLGFLVSGLQKKE 580
>ref|NP_223290.1| putative [Helicobacter pylori J99]
Length = 683
Score = 21.2 bits (43), Expect = 9.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 60 EKGEKKILYAPKINHLD 76
++GE+++ YA K +H D
Sbjct: 263 KEGEREVYYALKAHHRD 279
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.140 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,678
Number of Sequences: 1491
Number of extensions: 6513
Number of successful extensions: 23
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 494,079
effective HSP length: 67
effective length of query: 56
effective length of database: 394,182
effective search space: 22074192
effective search space used: 22074192
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 43 (21.2 bits)