BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644869|ref|NP_207039.1| hypothetical protein
[Helicobacter pylori 26695]
(131 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222947.1| putative [Helicobacter pylori J99] 250 8e-69
ref|NP_223436.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_222755.1| putative [Helicobacter pylori J99] 24 1.2
ref|NP_224174.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223922.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 24 1.6
ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacte... 23 2.1
ref|NP_223013.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223586.1| putative [Helicobacter pylori J99] 23 2.8
ref|NP_224043.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_223491.1| putative [Helicobacter pylori J99] 23 3.6
ref|NP_224120.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 22 6.1
ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXON... 22 6.1
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 22 8.0
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 8.0
>ref|NP_222947.1| putative [Helicobacter pylori J99]
Length = 131
Score = 250 bits (639), Expect = 8e-69
Identities = 122/131 (93%), Positives = 125/131 (95%)
Query: 1 MNELIRYGLIFLFFLKAFGLDYGIDKTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYAN 60
MNELIRYGLIFL FLKAFGLDYGIDKTLELKKDE F+A+IKDTSNEQTKEITLYWTLYAN
Sbjct: 1 MNELIRYGLIFLVFLKAFGLDYGIDKTLELKKDEAFRAVIKDTSNEQTKEITLYWTLYAN 60
Query: 61 KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA 120
KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEE FSSNS LSLVFKDFKEDKA LRLLA
Sbjct: 61 KGLVINMRFNHFPYQFILYTDHARNTYNLKVFEENFSSNSVLSLVFKDFKEDKATLRLLA 120
Query: 121 LMPLVFSPKEP 131
MPL+FSPKEP
Sbjct: 121 PMPLIFSPKEP 131
>ref|NP_223436.1| putative [Helicobacter pylori J99]
Length = 429
Score = 24.3 bits (51), Expect = 1.2
Identities = 9/37 (24%), Positives = 20/37 (53%)
Query: 77 ILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKEDK 113
+ Y + N +N++VF+ S L +K+ +++K
Sbjct: 131 LAYLNTRNNDFNIQVFDSDEESPEKLEETYKEIEKEK 167
>ref|NP_222755.1| putative [Helicobacter pylori J99]
Length = 351
Score = 24.3 bits (51), Expect = 1.2
Identities = 14/59 (23%), Positives = 29/59 (48%)
Query: 34 EVFKAIIKDTSNEQTKEITLYWTLYANKGLVINMRFNHFPYQFILYTDHARNTYNLKVF 92
E+F+ I N T+ ++ + ++N L ++ FNH Y +D + N ++ +F
Sbjct: 90 ELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLF 148
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 23.9 bits (50), Expect = 1.6
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 63 LVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKED 112
LV+N + Q L T K FE+K +N LSL +F +D
Sbjct: 49 LVLNKEIKNIEKQHALIT---------KEFEKKRETNEKLSLQMDEFLDD 89
>ref|NP_223922.1| putative [Helicobacter pylori J99]
Length = 352
Score = 23.9 bits (50), Expect = 1.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 95 KFSSNSTLSLVFKDFKEDKAALRLLALMPLVFSPK 129
K S L +F +FK K A L +P + +PK
Sbjct: 87 KNRSIDALIFLFSNFKNAKLAFSLRKSIPYILAPK 121
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 23.9 bits (50), Expect = 1.6
Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 6 RYGLIFLFFLKAFGLDYGIDKTLELKKDEV------FKAIIKDTSNEQTKEITLYWTLY 58
R+G + ++ L+A+G + + + L +K D++ ++AI K EQ E + T Y
Sbjct: 1301 RFGEMEVWALEAYGAAHTLKEMLTIKSDDIRGRENAYRAIAK---GEQVGESEIPETFY 1356
>ref|NP_224005.1| ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 347
Score = 23.5 bits (49), Expect = 2.1
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 23 GIDKTLELKKDEVFKAIIKDTSNEQTKEIT 52
G+ T+EL D+VF+AI +Q +EI+
Sbjct: 245 GLLHTIELSSDDVFEAI-----KDQVREIS 269
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 23.5 bits (49), Expect = 2.1
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 13 FFLKAFGLDYGIDKTLELKKDE 34
FF+ A YG+ K L+L+K +
Sbjct: 40 FFIVALSSYYGVKKRLDLRKQD 61
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.1 bits (48), Expect = 2.8
Identities = 13/45 (28%), Positives = 21/45 (45%)
Query: 26 KTLELKKDEVFKAIIKDTSNEQTKEITLYWTLYANKGLVINMRFN 70
K L LK +E+F + T+NE K + L G ++ R +
Sbjct: 197 KQLSLKNNEIFLMPLGTTNNELDKNLKTLAPLAIEHGFRLSDRLH 241
>ref|NP_224043.1| putative [Helicobacter pylori J99]
Length = 357
Score = 22.7 bits (47), Expect = 3.6
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 53 LYWTLYANKGLVINMRFNHFPYQFILYTDHARNTYNLKVFEEKFSSNSTLSLVFKDFKED 112
LY LYA N+F FI Y + +++ + S + + +FK +++
Sbjct: 26 LYLWLYAKYKTSFKDMQNNFSKDFIAYLEQEFTLRTIEIAHVRESVDGSKKYLFKSLRDN 85
>ref|NP_223491.1| putative [Helicobacter pylori J99]
Length = 462
Score = 22.7 bits (47), Expect = 3.6
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 88 NLKVFEEKFSSNSTLSLVFKDFKEDKAALRLLA 120
+LK+F E F +N LV DK R A
Sbjct: 104 DLKLFREVFKTNPNCFLVINKIDNDKEKERSYA 136
>ref|NP_224120.1| putative [Helicobacter pylori J99]
Length = 220
Score = 22.3 bits (46), Expect = 4.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 8 GLIFLFFLKAFGLDYGI 24
G+ +F K FGLDY +
Sbjct: 80 GMFAVFLSKLFGLDYSL 96
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 21.9 bits (45), Expect = 6.1
Identities = 9/32 (28%), Positives = 16/32 (49%)
Query: 90 KVFEEKFSSNSTLSLVFKDFKEDKAALRLLAL 121
K E+K+ + ++ K F EDK + +L
Sbjct: 171 KSVEDKYENLKVVTYTLKQFSEDKFCKNIYSL 202
>ref|NP_223041.1| putative SINGLE-STRANDED-DNA-SPECIFIC EXONUCLEASE RECJ
[Helicobacter pylori J99]
Length = 516
Score = 21.9 bits (45), Expect = 6.1
Identities = 13/29 (44%), Positives = 16/29 (54%)
Query: 88 NLKVFEEKFSSNSTLSLVFKDFKEDKAAL 116
NL+V EEK S L FKD + K A+
Sbjct: 451 NLEVIEEKIIKESHQVLRFKDKECVKEAI 479
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 21.6 bits (44), Expect = 8.0
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 29 ELKKDEVFKAIIKDTSNEQTKEITLYWTLYANKGLVI 65
+LKK+ + K +K S T WTLYAN + +
Sbjct: 216 DLKKEGLEKLKVKKAS--LVIWTTTPWTLYANVAIAL 250
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 21.6 bits (44), Expect = 8.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 21 DYGIDKTLELKKDEVFKAIIKDTSNEQT 48
D + TL K +++ + IIK +SNE +
Sbjct: 465 DERLQGTLTQKPEKLLERIIKASSNENS 492
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.324 0.142 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,328
Number of Sequences: 1491
Number of extensions: 6984
Number of successful extensions: 35
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 17
length of query: 131
length of database: 494,079
effective HSP length: 68
effective length of query: 63
effective length of database: 392,691
effective search space: 24739533
effective search space used: 24739533
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 44 (21.6 bits)