BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644870|ref|NP_207040.1| hypothetical protein
[Helicobacter pylori 26695]
(94 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222948.1| putative [Helicobacter pylori J99] 181 3e-48
ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPH... 26 0.16
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.21
ref|NP_222783.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 25 0.27
ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Heli... 25 0.36
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 25 0.36
ref|NP_223659.1| putative [Helicobacter pylori J99] 25 0.36
ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori ... 25 0.36
ref|NP_222991.1| putative [Helicobacter pylori J99] 24 0.47
ref|NP_223780.1| putative ATP synthase F1, subunit delta [H... 24 0.61
ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helico... 24 0.61
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 24 0.61
ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobact... 23 0.80
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 0.80
ref|NP_224202.1| abc transporter, ATP-binding protein [Heli... 23 1.0
ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pyl... 23 1.0
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 1.8
ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter p... 22 1.8
ref|NP_222774.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 22 2.3
ref|NP_223655.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223617.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223608.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 3.0
ref|NP_222775.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT... 21 5.2
ref|NP_223848.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223790.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99] 21 5.2
ref|NP_223543.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223371.1| putative abc transporter, ATP-binding prot... 21 5.2
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 21 5.2
ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 21 5.2
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 21 5.2
ref|NP_222840.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 20 6.8
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 20 6.8
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 20 6.8
ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERME... 20 6.8
ref|NP_222950.1| putative histidine kinase sensor protein [... 20 6.8
ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobac... 20 6.8
ref|NP_224070.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 20 8.8
>ref|NP_222948.1| putative [Helicobacter pylori J99]
Length = 94
Score = 181 bits (458), Expect = 3e-48
Identities = 92/94 (97%), Positives = 94/94 (99%)
Query: 1 MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESF 60
MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEE+FESF
Sbjct: 1 MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEERFESF 60
Query: 61 AKALRIDEELQQKIESRKTDIVIQSMANILSGNE 94
AKALR+DEELQQKIESRKTDIVIQSMANILSGNE
Sbjct: 61 AKALRMDEELQQKIESRKTDIVIQSMANILSGNE 94
>ref|NP_223430.1| GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE
[Helicobacter pylori J99]
Length = 776
Score = 25.8 bits (55), Expect = 0.16
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 53 LEEKFESFAKALRIDEELQQKIESRKTDIVIQ 84
L E +SF ++ EE++ K+ S K D +++
Sbjct: 553 LTEAMKSFENLAKLTEEIENKVFSLKEDAILE 584
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 25.4 bits (54), Expect = 0.21
Identities = 20/72 (27%), Positives = 40/72 (54%), Gaps = 5/72 (6%)
Query: 22 IFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIE--SRKT 79
+ +AS + S+ +RL+E L++ K+ + + F ++ +EEL K+E SR
Sbjct: 334 MMNASIEQSQGLRKRLIETQGLVKE--SKDAIGDLFSQITESAHTEEELSSKVEQLSRNA 391
Query: 80 DIVIQSMANILS 91
D V +S+ +I++
Sbjct: 392 DDV-KSILDIIN 402
>ref|NP_222783.1| putative [Helicobacter pylori J99]
Length = 806
Score = 25.4 bits (54), Expect = 0.21
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 15 LDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKI 74
LDK ND I+ KE+E E L L ++ K +L+EK F + +E + +
Sbjct: 143 LDKNNDFIYQQRILTESKEIE---EALKHLHEYL-KVNLQEKLAGFRDFVHYNENAKDSL 198
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 25.0 bits (53), Expect = 0.27
Identities = 17/62 (27%), Positives = 31/62 (49%)
Query: 30 SKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANI 89
+KK + +L+ L + IEK + EK E K + +E L +K E ++ + + N
Sbjct: 491 AKKLQDMVLQDTEPLFSKIEKIEKIEKIEKIEKIEKGEEALAEKAEKKEKEKAPPTQENY 550
Query: 90 LS 91
+S
Sbjct: 551 IS 552
>ref|NP_224176.1| TRANSCRIPTION-REPAIR COUPLING FACTOR [Helicobacter pylori J99]
Length = 1001
Score = 24.6 bits (52), Expect = 0.36
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 49 EKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANIL 90
+ +DL FE F + L E Q +E+++ I+I ++ +L
Sbjct: 53 KNDDLRSFFEEFLQLLGGLREFYQALENKQETIIIAPISALL 94
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 24.6 bits (52), Expect = 0.36
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 11/69 (15%)
Query: 22 IFHASKKLSKKELERLLELLA-----LLETFI-----EKEDLEEKFESFAKALRIDEE-L 70
I H + L K+ E+ E+LA E++ ++ +L ++FE+FAK L+ +++ L
Sbjct: 60 IGHQIETLLKEAAEKRREMLAEAIQKATESYDAVIKQKENELNQEFEAFAKQLQNEKQIL 119
Query: 71 QQKIESRKT 79
+++++++ T
Sbjct: 120 KEQLQAQMT 128
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 24.6 bits (52), Expect = 0.36
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 6 ELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALR 65
E E + +DK + H K +SK EL ELL + ++K+ F++FA
Sbjct: 315 EKESLSIDRIDKRKPVSEHL-KNMSKHEL---YELLGFYQKELDKKQNHSAFKNFAILNG 370
Query: 66 IDEELQQKIES----RKTDIVIQSMANI 89
+D + +++ + +K ++++ + ++
Sbjct: 371 LDRDFERETKGYSVLKKKEMLLNKLKHL 398
>ref|NP_223359.1| DNA GYRASE SUBUNIT A [Helicobacter pylori J99]
Length = 828
Score = 24.6 bits (52), Expect = 0.36
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 31 KKELERLLELLALLETFIEKED---------LEEKFESFAKALRIDEELQQKIESRKTDI 81
K+E + LLEL+ L ++ ED L E E F+ R E+Q+ ES T+
Sbjct: 443 KEEYQNLLELIDDLNGILKSEDRLNEVVKTELLEVKEQFSSPRR--TEIQESYESIDTED 500
Query: 82 VIQSMANILS 91
+I + ++S
Sbjct: 501 LIANEPMVVS 510
>ref|NP_222991.1| putative [Helicobacter pylori J99]
Length = 418
Score = 24.3 bits (51), Expect = 0.47
Identities = 19/69 (27%), Positives = 34/69 (48%), Gaps = 3/69 (4%)
Query: 1 MRDYSELEIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESF 60
MRD LE + L+ D+IFH +K + +L+ L AL+E +K+ + + F
Sbjct: 329 MRDSVSLEDSKKR-LNAIKDLIFHKNKAFRQLQLKLNTPLKALVEA--QKDGEFKALDQF 385
Query: 61 AKALRIDEE 69
++I +
Sbjct: 386 FNPIKIKSD 394
>ref|NP_223780.1| putative ATP synthase F1, subunit delta [Helicobacter pylori J99]
Length = 180
Score = 23.9 bits (50), Expect = 0.61
Identities = 22/93 (23%), Positives = 43/93 (45%), Gaps = 17/93 (18%)
Query: 11 EGNPLDKWNDIIFHASKKLSKKELERLLELL------ALLETFIE---KEDLEEKFESFA 61
E L K N ++ H S K+ K+ + +LE + ++L+ +E K + + E A
Sbjct: 38 EAIKLHKLNQVLAHVSLKVKKEVVLEILEKITPTKACSILKPVMEVVLKNNRLDMLELVA 97
Query: 62 KALRIDEE--------LQQKIESRKTDIVIQSM 86
+ L D + + QK+E+ + + V Q +
Sbjct: 98 EELSFDSKRTLEATLLVPQKLENNELEEVQQKL 130
Score = 20.4 bits (41), Expect = 6.8
Identities = 12/44 (27%), Positives = 19/44 (42%)
Query: 35 ERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRK 78
+R LE L+ +E +LEE + E+ Q S+K
Sbjct: 105 KRTLEATLLVPQKLENNELEEVQQKLQARFNAPVEIAQDTWSKK 148
>ref|NP_223701.1| D-3-PHOSPHOGLYCERATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 524
Score = 23.9 bits (50), Expect = 0.61
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 15 LDKWNDIIFHASKKLSKKE-LERLLELLALL 44
L+ DI+ H K KKE LE+L+ + AL+
Sbjct: 18 LEAQKDIVLHDYSKCPKKELLEKLIPMDALI 48
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 23.9 bits (50), Expect = 0.61
Identities = 15/42 (35%), Positives = 22/42 (51%)
Query: 53 LEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANILSGNE 94
+EE +E FAK +I +L+ I+ I + A LSG E
Sbjct: 790 VEEAYEFFAKFPKIAVKLKTLIDVGLGYITLGQNATTLSGGE 831
>ref|NP_223808.1| putative THIOREDOXIN REDUCTASE [Helicobacter pylori J99]
Length = 324
Score = 23.5 bits (49), Expect = 0.80
Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 5/61 (8%)
Query: 23 FHASKKLSKKELERLLEL---LALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKT 79
+ A K++ K ++++EL + ++F KE+ E F + K RI + IES K
Sbjct: 49 YKAGKRIDKDYKKQVVELKGHIPFKDSF--KEETLENFTNLLKEHRITPSYKTDIESVKK 106
Query: 80 D 80
+
Sbjct: 107 E 107
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 23.5 bits (49), Expect = 0.80
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 8 EIFEGNPLDKWNDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRID 67
+I L + D A + KKE E+LL T K+ LEE+ + KA +D
Sbjct: 568 DILAKESLKAYKDCASQAKTEAEKKECEKLL-------TPEAKKLLEEEAKESVKAY-LD 619
Query: 68 EELQQKIESRKTD 80
Q K E+ K +
Sbjct: 620 CVSQAKTEAEKKE 632
>ref|NP_224202.1| abc transporter, ATP-binding protein [Helicobacter pylori J99]
Length = 327
Score = 23.1 bits (48), Expect = 1.0
Identities = 14/54 (25%), Positives = 27/54 (49%)
Query: 29 LSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIV 82
L KEL++ + + ++ + FE+ A AL I + KI+SR +++
Sbjct: 70 LKPKELQKARQKIGMIFQHFNLLSAKNVFENVAFALEIARWEKTKIKSRVHELL 123
>ref|NP_223688.1| putative PARALOG OF HpaA [Helicobacter pylori J99]
Length = 249
Score = 23.1 bits (48), Expect = 1.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 18 WNDIIFHASKKLSKKELER 36
++ ++ H +K+LSKK +ER
Sbjct: 219 YHKVMAHITKELSKKHMER 237
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 34 LERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTD 80
+ERLL L E I + ++ + F K L+++ L K D
Sbjct: 618 IERLLTEFPLKEPIISESQKKDFIKLFGKILKLENILNSFENFNKDD 664
>ref|NP_223408.1| putative FLAGELLAR PROTEIN [Helicobacter pylori J99]
Length = 126
Score = 22.3 bits (46), Expect = 1.8
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 19 NDIIFHASKKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRK 78
N + + KL + E +L + + IE ED+E+K + I EL ++ K
Sbjct: 13 NRVSVESPAKLIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEK 72
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.3 bits (46), Expect = 1.8
Identities = 19/63 (30%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Query: 15 LDKWNDIIFHASKKLS--KKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQ 72
L+ N + A +K++ K ELER + L LE K DL+ A A + +
Sbjct: 239 LENSNVQLAQAKEKIAIEKSELEREIARLKSLEGMEAKSDLDLHNRRLASANEDLKRQNR 298
Query: 73 KIE 75
K+E
Sbjct: 299 KLE 301
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 21.9 bits (45), Expect = 2.3
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 1 MRDYSELEIFEGNPLDKWNDI 21
+++Y E +FE +P+D+ N I
Sbjct: 615 LKEYLERMVFEIDPIDEENKI 635
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 21.9 bits (45), Expect = 2.3
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 62 KALRIDEELQQKIESRKTDIV 82
+ R+D EL+Q+I++ D++
Sbjct: 291 RTTRLDNELEQEIQTLTLDLI 311
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/48 (22%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Query: 35 ERLLELLALLETFIEKEDLEEKFESFA--KALRIDEELQQKIESRKTD 80
+ L++ L+E ++++ L+EK + F A+ EEL++ ++ + +
Sbjct: 4 QELIKKSTLIEKVLQEQGLQEKAKPFMSDNAVIKTEELEKTLKEMQAE 51
>ref|NP_223608.1| putative [Helicobacter pylori J99]
Length = 242
Score = 21.9 bits (45), Expect = 2.3
Identities = 13/31 (41%), Positives = 19/31 (60%), Gaps = 1/31 (3%)
Query: 40 LLALLET-FIEKEDLEEKFESFAKALRIDEE 69
+LAL + FIE DL F+ +A R+D+E
Sbjct: 65 ILALFKPPFIESYDLVSFFKGWALLHRLDKE 95
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 23 FHASKKLSKKELERLLELLALLETFIEKE 51
FH K + K+ E LA+++ IE+E
Sbjct: 109 FHLKAKKAFKDRAVKKEYLAIVQGIIEEE 137
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 21.9 bits (45), Expect = 2.3
Identities = 15/43 (34%), Positives = 22/43 (50%), Gaps = 12/43 (27%)
Query: 31 KKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQK 73
KKELE+ E++ LE++ E+F K I +E Q K
Sbjct: 115 KKELEK------------ERQILEQERENFKKQRAICKEAQAK 145
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 21.6 bits (44), Expect = 3.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 28 KLSKKELERLLELLALLETFIEKEDLEEKFES 59
+L +E LLEL + F+E +D+ + +E+
Sbjct: 329 RLFIEECGTLLELKEKISLFLEPKDIVKTYEN 360
>ref|NP_222775.1| putative [Helicobacter pylori J99]
Length = 143
Score = 21.2 bits (43), Expect = 4.0
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 26 SKKLSKKELERLLELLALLETFIEKEDLEE 55
+KK++ +++E+ LE+++ + ++ E L++
Sbjct: 84 AKKITNEQIEKTLEIVSDSDVDVDFEKLKK 113
>ref|NP_224006.1| ATP-DEPENDENT PROTEASE,ATP-BINDING SUBUNIT [Helicobacter pylori
J99]
Length = 452
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/22 (36%), Positives = 15/22 (67%)
Query: 20 DIIFHASKKLSKKELERLLELL 41
+++ +K+SKKE E +L L+
Sbjct: 301 NVLGFTQEKMSKKEQEAILHLV 322
>ref|NP_223848.1| putative [Helicobacter pylori J99]
Length = 222
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 15 LDK-WNDIIFHASKKLSKKELERLLELLALLETF 47
+DK + + IFH + EL+ L E L + + F
Sbjct: 105 IDKHYQNYIFHIASAALHSELQVLCEFLGITKYF 138
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 20.8 bits (42), Expect = 5.2
Identities = 13/42 (30%), Positives = 23/42 (53%), Gaps = 2/42 (4%)
Query: 39 ELLALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTD 80
+LLAL+ +F+E E EE + E++ +I+S K +
Sbjct: 63 QLLALIRSFLEPE--EELKRIYFYVSEPFTEVEPRIKSNKKE 102
>ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
Length = 455
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 26 SKKLSKKELERLL 38
+KK+ KKEL R+L
Sbjct: 5 NKKVEKKELSRIL 17
>ref|NP_223543.1| putative [Helicobacter pylori J99]
Length = 100
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 70 LQQKIESRKTDIVIQSMAN 88
L QKIE D+V++++ N
Sbjct: 19 LNQKIELEVFDLVVENLRN 37
>ref|NP_223371.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 240
Score = 20.8 bits (42), Expect = 5.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 41 LALLETFIEKEDLEEKFESFAKALRIDEELQQK 73
LA TF ++ EEK ES A I ++K
Sbjct: 101 LAGESTFKNSKESEEKMESLLDAFNIQAIRERK 133
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 20.8 bits (42), Expect = 5.2
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 16 DKWNDIIFHASKKLSKKELERLLELLALLETFIEKE-DLEEKFESFAKALRIDEELQQKI 74
D + + K L K LE++ + L F+EK L+ E K +
Sbjct: 269 DYYKVFLGETDKDLYVKRLEKITPKIYLASVFLEKHTPLKSLLEKIPKGKKETITYHNPC 328
Query: 75 ESRKT 79
++KT
Sbjct: 329 HAKKT 333
>ref|NP_223153.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 351
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/30 (33%), Positives = 18/30 (59%)
Query: 26 SKKLSKKELERLLELLALLETFIEKEDLEE 55
S+ S K E+L++++ L+ K+DL E
Sbjct: 224 SEHSSPKNNEKLIKIMQTLKDGQSKDDLPE 253
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/40 (27%), Positives = 22/40 (54%), Gaps = 1/40 (2%)
Query: 1 MRDYSE-LEIFEGNPLDKWNDIIFHASKKLSKKELERLLE 39
++++S+ +E F+ + ND+ S+ +LERL E
Sbjct: 80 LQEFSKTMEAFKTKLIQSANDVHSETSRAAIANDLERLKE 119
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 45 ETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTD 80
ET +KE +K +K + + LQQ+ E + +D
Sbjct: 244 ETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISD 279
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 20.4 bits (41), Expect = 6.8
Identities = 9/38 (23%), Positives = 20/38 (51%)
Query: 57 FESFAKALRIDEELQQKIESRKTDIVIQSMANILSGNE 94
F+ F K +++ + KI++ D + + +L+G E
Sbjct: 293 FKKFPKFIQLYDNATSKIQALDFDAIKDKVHVLLNGYE 330
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 20.4 bits (41), Expect = 6.8
Identities = 17/48 (35%), Positives = 20/48 (41%)
Query: 27 KKLSKKELERLLELLALLETFIEKEDLEEKFESFAKALRIDEELQQKI 74
K+ K ERL LE KED E+ K L E+L KI
Sbjct: 181 KRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKKLLSSKEKLNDKI 228
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 39 ELLALLETFIEKEDLEEKFESF 60
E+L + + FI+ E+ E E F
Sbjct: 541 EILEIADDFIQLEESESYMEEF 562
>ref|NP_223592.1| putative AMINO ACID ABC TRANSPORTER, PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 237
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 22 IFHASKKLSKKELERLLE 39
+F S LSK+ LE LLE
Sbjct: 9 LFFESLDLSKERLELLLE 26
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 43 LLETFIEKEDLEEKFE 58
LLE F K+D++E E
Sbjct: 50 LLENFSNKKDMQELLE 65
>ref|NP_222892.1| SERINE HYDROXYMETHYLTRANSFERASE [Helicobacter pylori J99]
Length = 416
Score = 20.4 bits (41), Expect = 6.8
Identities = 8/29 (27%), Positives = 19/29 (64%)
Query: 50 KEDLEEKFESFAKALRIDEELQQKIESRK 78
KE+L+ +F+++AK ++ + ++ K K
Sbjct: 272 KENLKPEFKAYAKLVKSNMQVLAKTLKEK 300
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/24 (37%), Positives = 14/24 (57%)
Query: 44 LETFIEKEDLEEKFESFAKALRID 67
L+ + E LE+K+ FA R+D
Sbjct: 85 LKRHVIYESLEKKYAHFAPVGRLD 108
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 20.0 bits (40), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 57 FESFAKALRIDEELQQKIESRKTDIVIQ 84
FES K +ELQ+ +ES + IQ
Sbjct: 121 FESVLKPYLDTKELQKTLESLRKGRTIQ 148
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.134 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,639
Number of Sequences: 1491
Number of extensions: 4138
Number of successful extensions: 47
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of query: 94
length of database: 494,079
effective HSP length: 70
effective length of query: 24
effective length of database: 389,709
effective search space: 9353016
effective search space used: 9353016
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)