BLASTP 2.2.1 [Apr-13-2001]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15644871|ref|NP_207041.1| neutrophil activating
protein (napA) (bacterioferritin) [Helicobacter pylori 26695]
         (144 letters)

Database: NC_000921.faa
           1491 sequences; 494,079 total letters

Searching...done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_222949.1|  NEUTROPHIL-ACTIVATING PROTEIN A [Helicobac...   285  3e-79
ref|NP_222840.1|  putative [Helicobacter pylori J99]               29  0.045
ref|NP_222937.1|  putative [Helicobacter pylori J99]               26  0.38
ref|NP_223756.1|  ADENYLOSUCCINATE LYASE [Helicobacter pylor...    26  0.50
ref|NP_223656.1|  putative [Helicobacter pylori J99]               25  0.85
ref|NP_224141.1|  TYPE I RESTRICTION ENZYME (MODIFICATION SU...    25  1.1
ref|NP_223296.1|  putative [Helicobacter pylori J99]               25  1.1
ref|NP_223966.1|  CATION EFFLUX SYSTEM PROTEIN [Helicobacter...    24  1.4
ref|NP_223399.1|  putative [Helicobacter pylori J99]               24  1.4
ref|NP_223629.1|  putative [Helicobacter pylori J99]               24  1.9
ref|NP_223140.1|  OLIGOPEPTIDASE [Helicobacter pylori J99]         24  1.9
ref|NP_223644.1|  putative [Helicobacter pylori J99]               23  3.2
ref|NP_223188.1|  cag island protein [Helicobacter pylori J99]     23  3.2
ref|NP_224153.1|  putative [Helicobacter pylori J99]               23  4.2
ref|NP_223787.1|  putative [Helicobacter pylori J99]               23  4.2
ref|NP_223551.1|  outer membrane protein - adhesin [Helicoba...    23  4.2
ref|NP_223192.1|  cag island protein, DNA transfer protein [...    23  4.2
ref|NP_222812.1|  methyl-accepting chemotaxis protein (MCP) ...    23  4.2
ref|NP_224081.1|  DNA POLYMERASE I [Helicobacter pylori J99]       22  5.5
ref|NP_224015.1|  putative TYPE III RESTRICTION ENZYME [Heli...    22  5.5
ref|NP_223415.1|  putative [Helicobacter pylori J99]               22  5.5
ref|NP_224109.1|  putative [Helicobacter pylori J99]               22  7.2
ref|NP_223258.1|  putative [Helicobacter pylori J99]               22  7.2
ref|NP_223055.1|  putative [Helicobacter pylori J99]               22  7.2
ref|NP_224011.1|  ATP-DEPENDENT PROTEASE LA [Helicobacter py...    22  9.3
ref|NP_223914.1|  phosphohexosemutase [Helicobacter pylori J99]    22  9.3
ref|NP_223699.1|  30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl...    22  9.3
ref|NP_223643.1|  putative [Helicobacter pylori J99]               22  9.3
ref|NP_223380.1|  putative Outer membrane protein [Helicobac...    22  9.3
ref|NP_223121.1|  putative [Helicobacter pylori J99]               22  9.3
ref|NP_223108.1|  putative FLAGELLAR BIOSYNTHESIS PROTEIN [H...    22  9.3
ref|NP_222876.1|  putative PROTEASE [Helicobacter pylori J99]      22  9.3
>ref|NP_222949.1| NEUTROPHIL-ACTIVATING PROTEIN A [Helicobacter pylori J99]
          Length = 144

 Score =  285 bits (730), Expect = 3e-79
 Identities = 141/144 (97%), Positives = 143/144 (98%)

Query: 1   MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQ 60
           MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYE FADMFDDLAERIVQ
Sbjct: 1   MKTFEILKHLQADAIVLFMKVHNFHWNVKGTDFFNVHKATEEIYEGFADMFDDLAERIVQ 60

Query: 61  LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKV 120
           LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYK+LEKEFKELSNTAEKEGDKV
Sbjct: 61  LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKV 120

Query: 121 TVTYADDQLAKLQKSIWMLQAHLA 144
           TVTYADDQLAKLQKSIWML+AHLA
Sbjct: 121 TVTYADDQLAKLQKSIWMLEAHLA 144
>ref|NP_222840.1| putative [Helicobacter pylori J99]
          Length = 285

 Score = 29.3 bits (64), Expect = 0.045
 Identities = 20/73 (27%), Positives = 36/73 (48%), Gaps = 14/73 (19%)

Query: 24  FHWNVKGTDFFNVHKATEEIYEEFADMFDDLAE---RIVQLGHHPLVTLSEAIKLTRVKE 80
           F+W  KG+DF  +H       E+F DM+D   +    +V++         +AI L +++E
Sbjct: 133 FNWLYKGSDFGALH-------EQFGDMYDGYIKYLISMVRVSQKEKARKVDAIVLKKMEE 185

Query: 81  ----ETKTSFHSK 89
               +TK +F  +
Sbjct: 186 QAEKDTKAAFQKR 198
>ref|NP_222937.1| putative [Helicobacter pylori J99]
          Length = 265

 Score = 26.2 bits (56), Expect = 0.38
 Identities = 19/70 (27%), Positives = 28/70 (39%), Gaps = 6/70 (8%)

Query: 74  KLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQ 133
           K+  +    + S     IF EI  DY        EL +T  +  DK+    +D      Q
Sbjct: 110 KIQALNATQQNSAKLNAIFNEIPADYAI------ELPSTNAENKDKILYIVSDPMCPHCQ 163

Query: 134 KSIWMLQAHL 143
           K +  L+ HL
Sbjct: 164 KELTKLRDHL 173
>ref|NP_223756.1| ADENYLOSUCCINATE LYASE [Helicobacter pylori J99]
          Length = 440

 Score = 25.8 bits (55), Expect = 0.50
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 11/113 (9%)

Query: 26  WN--VKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETK 83
           WN   K   +  V KA    + +   + D   E+I          L  A  L R+KE  K
Sbjct: 14  WNEQTKFETYLEVEKAVVRAWNKLGQIQDSDCEKIC---------LKAAFNLERIKEIEK 64

Query: 84  TSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSI 136
           T+ H    F   + +    E  F     T+    D          L  +QK +
Sbjct: 65  TTKHDLIAFTTCVAESLGEESRFFHYGITSSDCIDTAMALLMTKSLKLIQKGV 117
>ref|NP_223656.1| putative [Helicobacter pylori J99]
          Length = 337

 Score = 25.0 bits (53), Expect = 0.85
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 69  LSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKE 108
           L + +KL  +KE+T TS ++K    + L     L KEF +
Sbjct: 38  LLKRVKLHNIKEDTLTSCNAKVDGSQYLNSGWNLSKEFPQ 77
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
           pylori J99]
          Length = 815

 Score = 24.6 bits (52), Expect = 1.1
 Identities = 19/91 (20%), Positives = 39/91 (41%), Gaps = 14/91 (15%)

Query: 43  IYEEFADMFDD-LAERIVQLGHHPLVTLSEAIKLTRVKEETKTS-------------FHS 88
           +Y+ F D +++ L +    +  +   +  E  KLT +K++ K +             ++ 
Sbjct: 573 VYQLFKDYYNEVLQDDWFLISFNGFRSAKELRKLTPLKDKNKKANYLEEPDFIVQKTYYK 632

Query: 89  KDIFKEILEDYKYLEKEFKELSNTAEKEGDK 119
            D+  + L   ++ EKE KEL        +K
Sbjct: 633 SDLIPKHLIKQRFFEKETKELEELENALNEK 663
 Score = 21.9 bits (45), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (54%)

Query: 93  KEILEDYKYLEKEFKELSNTAEKEGDK 119
           K  ++ Y    + FKEL NT  K+ DK
Sbjct: 469 KNEIKAYDPYFQVFKELKNTLFKKSDK 495
>ref|NP_223296.1| putative [Helicobacter pylori J99]
          Length = 512

 Score = 24.6 bits (52), Expect = 1.1
 Identities = 27/93 (29%), Positives = 40/93 (42%), Gaps = 17/93 (18%)

Query: 30  GTDF---FNVHKATEE---IYEEFADMFDDLAERIVQLGHHPLV--TLSEAIKLTRVKEE 81
           G DF   FN+ K  E+   + + +A  F D   RIV+L  + LV   L +  ++      
Sbjct: 329 GFDFNQIFNLLKQDEKASRMLKNYATKFPDFYARIVELSQYNLVGANLLDFFRILGFVLG 388

Query: 82  TKTSFHSKDIF---KEILE------DYKYLEKE 105
               FHS  +    KE L       DYK L+ +
Sbjct: 389 YSEDFHSHSVISLAKECLRPKGPRIDYKILKDD 421
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
          Length = 341

 Score = 24.3 bits (51), Expect = 1.4
 Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 1/46 (2%)

Query: 91  IFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAKLQKSI 136
           IF + L    Y+EK +   + T  K+GD++   Y+  +LA +Q  +
Sbjct: 70  IFSQTLRFDGYVEKLYANKTYTPIKKGDRLLSVYS-PELAGVQSEL 114
>ref|NP_223399.1| putative [Helicobacter pylori J99]
          Length = 404

 Score = 24.3 bits (51), Expect = 1.4
 Identities = 10/32 (31%), Positives = 16/32 (49%)

Query: 26  WNVKGTDFFNVHKATEEIYEEFADMFDDLAER 57
           W+ KG +  + H   + I +E  D F  L E+
Sbjct: 96  WDTKGIEDKDYHDTMQSIKKEMEDSFKTLDEK 127
>ref|NP_223629.1| putative [Helicobacter pylori J99]
          Length = 487

 Score = 23.9 bits (50), Expect = 1.9
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 63  HHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLE 103
           +HP  +  E   + R+   TKT F  K + +E+ + YK ++
Sbjct: 445 NHPF-SAEENQYMQRLVNNTKTDFFDKALIEELKKRYKIVK 484
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
          Length = 578

 Score = 23.9 bits (50), Expect = 1.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 61  LGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKEG 117
           LGH     L +  +   + +E+ T  +S+ + +E+L+  K    EF ++++ A KEG
Sbjct: 274 LGHK----LKDYDRYAPLNDESITMTYSQAL-EEVLKTLKAFSPEFHKIASKAIKEG 325
>ref|NP_223644.1| putative [Helicobacter pylori J99]
          Length = 465

 Score = 23.1 bits (48), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (63%)

Query: 92  FKEILEDYKYLEKEFKE 108
           FKEIL D    EK +KE
Sbjct: 393 FKEILRDTNNFEKAYKE 409
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
          Length = 219

 Score = 23.1 bits (48), Expect = 3.2
 Identities = 15/31 (48%), Positives = 19/31 (60%), Gaps = 1/31 (3%)

Query: 86  FHSKDIFKEILEDYKYLEKEFKELSNTAEKE 116
           F+  D+ K+  E  K LEKE KEL N  EK+
Sbjct: 101 FYFIDLAKQN-ERKKDLEKEKKELLNKIEKQ 130
>ref|NP_224153.1| putative [Helicobacter pylori J99]
          Length = 435

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 10/81 (12%)

Query: 35  NVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAI--KLTRVKEETKTSFHSKDIF 92
           N+++  EE  + F  + D L +  +   H  L      I  +L   KE  K         
Sbjct: 151 NIYEHQEEDLD-FKGLLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLKEKL------ 203

Query: 93  KEILEDYKYLEKEFKELSNTA 113
            E LED K L+ E KEL   A
Sbjct: 204 -EKLEDPKTLQLEAKELQTQA 223
>ref|NP_223787.1| putative [Helicobacter pylori J99]
          Length = 759

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 21/77 (27%), Positives = 34/77 (43%), Gaps = 23/77 (29%)

Query: 75  LTRVKEETKTSF----------HSKDIFKEILEDYKYLE----KEFKELSNT-------- 112
           LT+ KE+ +  F           +++ FKEILE +K  E    K  KE  N         
Sbjct: 147 LTQKKEKEEKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFENDKHNQSEIV 206

Query: 113 -AEKEGDKVTVTYADDQ 128
             EK  +K+ + ++ +Q
Sbjct: 207 GLEKLKEKIEIVFSKNQ 223
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
          Length = 744

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 92  FKEILEDYKYLEKEFKELSNTAEKEGDKVTVTY 124
           FK++ E Y+ L+   K      ++   KV VTY
Sbjct: 173 FKKLNEAYQILQTALKRGLPALKENNGKVNVTY 205
>ref|NP_223192.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
          Length = 330

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 44  YEEFADMFDDLAERIVQLGHH 64
           +E   + F DL + IV + HH
Sbjct: 299 FESLIEGFKDLIDMIVHINHH 319
>ref|NP_222812.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
          Length = 675

 Score = 22.7 bits (47), Expect = 4.2
 Identities = 10/31 (32%), Positives = 18/31 (57%)

Query: 106 FKELSNTAEKEGDKVTVTYADDQLAKLQKSI 136
           FK L+N A     K+    ++D+L ++Q +I
Sbjct: 342 FKLLNNQAHSSDIKLVEARSNDELGRMQTAI 372
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
          Length = 897

 Score = 22.3 bits (46), Expect = 5.5
 Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 3/51 (5%)

Query: 66  LVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEKE 116
           L+TL+  I+   VK      F     FK     +K LE+EFK   N  E++
Sbjct: 499 LLTLARDIETPFVKVLMGMEFQG---FKIDAPYFKRLEQEFKNELNVLERQ 546
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
          Length = 779

 Score = 22.3 bits (46), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 19  MKVHNFHWNVKGTDFFNVHKA 39
           +K HN   ++KG  FF +H +
Sbjct: 740 LKSHNKKLHLKGLPFFTLHNS 760
>ref|NP_223415.1| putative [Helicobacter pylori J99]
          Length = 529

 Score = 22.3 bits (46), Expect = 5.5
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 87  HSKDIFKEILEDYK-YLEKEFKEL 109
           H +   KE + D K YLEKE KEL
Sbjct: 95  HLEAQHKEFVRDEKRYLEKEKKEL 118
>ref|NP_224109.1| putative [Helicobacter pylori J99]
          Length = 355

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 11/32 (34%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 64  HPLVTLSEAIKLTRVKEETKTSF-HSKDIFKE 94
           +PL+  ++ IK+ R+K++T  S+  +K+ F E
Sbjct: 156 NPLLQKAQNIKVFRLKDKTLESYAEAKEAFFE 187
>ref|NP_223258.1| putative [Helicobacter pylori J99]
          Length = 591

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 10/45 (22%)

Query: 87  HSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYADDQLAK 131
           HSKD+FK +L+       +   + +           ++ADD + K
Sbjct: 157 HSKDLFKHVLKQENITNTQILHIGDN----------SWADDAMPK 191
>ref|NP_223055.1| putative [Helicobacter pylori J99]
          Length = 778

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 14/67 (20%), Positives = 24/67 (34%)

Query: 44  YEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSFHSKDIFKEILEDYKYLE 103
           Y E   + +DL      L    L+ L         ++ +K     K+   +I+  Y  L+
Sbjct: 312 YTELVKILEDLQTSDCNLSGSALLDLENITLALLEQQSSKEKAPLKEAHSQIMHQYHLLK 371

Query: 104 KEFKELS 110
              K  S
Sbjct: 372 DTLKNYS 378
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
          Length = 831

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 78  VKEETKTSFHSKDIFKEILEDYKYLEKEF--KELSNTAEKE 116
           V EETKT    K+I  ++ +  +   KE+  KE     +KE
Sbjct: 198 VIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKE 238
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
          Length = 459

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 75  LTRVKEETKTSFHSKDIFKEILEDYKYLEKEFKELSNTAEK 115
           L   K E K    + +    +   ++YL K+FK L N   K
Sbjct: 133 LLNAKHEIKPLKETPEKVNALEAYHRYLIKDFKHLKNLKYK 173
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
          Length = 552

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 21/101 (20%), Positives = 40/101 (38%), Gaps = 19/101 (18%)

Query: 39  ATEEIYEEFADMF----DDLAERIVQLGHHPLVTLSEAIKLTRVK---EETKTSFHSKDI 91
           A  EI +E   +     D +   + + G HP V+  +AI   +++   EE   ++ +  I
Sbjct: 60  ALNEITDEKGQLMYQKNDPIVVHVSEKGEHPSVSYKKAISQQKIQAKIEELGENYENAII 119

Query: 92  FKEILEDYK------------YLEKEFKELSNTAEKEGDKV 120
             +I+   K            +L +    L N A   G ++
Sbjct: 120 EGKIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHIGKRI 160
>ref|NP_223643.1| putative [Helicobacter pylori J99]
          Length = 338

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 15/45 (33%), Positives = 20/45 (44%)

Query: 42  EIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKEETKTSF 86
           E Y    DM  D+ +  +    +  V+L EA  L   KEE  T F
Sbjct: 110 EPYCNLNDMILDMEKNRLGFQSNAWVSLEEAKMLGASKEERDTIF 154
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
          Length = 651

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 9/26 (34%), Positives = 17/26 (64%), Gaps = 1/26 (3%)

Query: 90  DIFKEILED-YKYLEKEFKELSNTAE 114
           ++F  I +D Y+YLEK + ++ N  +
Sbjct: 321 NLFSSIPKDQYRYLEKAYLKIPNAGK 346
>ref|NP_223121.1| putative [Helicobacter pylori J99]
          Length = 288

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 9/34 (26%), Positives = 16/34 (46%)

Query: 25  HWNVKGTDFFNVHKATEEIYEEFADMFDDLAERI 58
           H+N+K   FFNV +     +  +  +  D  + I
Sbjct: 165 HFNLKTNAFFNVSQKEAHFFAYYQCVVGDKGDNI 198
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
          Length = 455

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 13/78 (16%)

Query: 21  VHNFHWNVKGTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHH--PLVTLSEAIKLTRV 78
           + N  W+ K  +  N+ +   EIY+        LA++      H   ++ LS  +   R+
Sbjct: 170 IQNMFWDEKNPNSVNIPQEFAEIYK--------LAKQSGMKSSHLDEIMQLSLELMPLRM 221

Query: 79  KEETKTSFHSKDIFKEIL 96
           +E + T    K  F+E+L
Sbjct: 222 RENSVT---IKRYFREVL 236
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
          Length = 422

 Score = 21.6 bits (44), Expect = 9.3
 Identities = 10/41 (24%), Positives = 23/41 (55%), Gaps = 3/41 (7%)

Query: 62  GHHPLVTLSEAIKLTRVKEETKTSFHSKD---IFKEILEDY 99
           GH   +  S AI   +++  TK+S+++     I++  ++D+
Sbjct: 237 GHIAEILSSNAISALKIEGRTKSSYYAAQTTRIYRLAVDDF 277
  Database: NC_000921.faa
    Posted date:  Dec 10, 2001  4:36 PM
  Number of letters in database: 494,079
  Number of sequences in database:  1491
  
Lambda     K      H
   0.319    0.134    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,525
Number of Sequences: 1491
Number of extensions: 6859
Number of successful extensions: 45
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 33
length of query: 144
length of database: 494,079
effective HSP length: 70
effective length of query: 74
effective length of database: 389,709
effective search space: 28838466
effective search space used: 28838466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)