BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644873|ref|NP_207043.1| hypothetical protein
[Helicobacter pylori 26695]
(105 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222951.1| putative [Helicobacter pylori J99] 209 1e-56
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 27 0.12
ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobact... 24 0.79
ref|NP_223560.1| putative [Helicobacter pylori J99] 24 1.0
ref|NP_222749.1| putative [Helicobacter pylori J99] 24 1.0
ref|NP_223643.1| putative [Helicobacter pylori J99] 23 1.8
ref|NP_223507.1| putative abc transporter, ATP-binding prot... 23 1.8
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 23 1.8
ref|NP_223891.1| putative [Helicobacter pylori J99] 23 2.3
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 23 2.3
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 22 3.0
ref|NP_223761.1| putative [Helicobacter pylori J99] 22 3.9
ref|NP_223158.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 22 5.1
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 22 5.1
ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter py... 21 6.7
ref|NP_223346.1| putative [Helicobacter pylori J99] 21 8.8
ref|NP_222928.1| putative [Helicobacter pylori J99] 21 8.8
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 21 8.8
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 209 bits (532), Expect = 1e-56
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP 60
MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP
Sbjct: 1 MINNNKAMLEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNP 60
Query: 61 LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP 105
LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP
Sbjct: 61 LYPKAPGDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQEKQKP 105
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 26.9 bits (58), Expect = 0.12
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 9 LEQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLK 48
LE YN+ ++ L ++ ND + K + + F+A++LK
Sbjct: 391 LEIYNLEVVSIPTNLAIKRKDLNDLIYKSEKEKFDAVILK 430
Score = 23.9 bits (50), Expect = 1.0
Identities = 16/44 (36%), Positives = 23/44 (51%), Gaps = 5/44 (11%)
Query: 21 EKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMK-----MDN 59
EKLK+ +NK L EQ E ++ +LD+A + MDN
Sbjct: 697 EKLKSDYENKMKALDSEQRSRIERIVYLQILDNAWREHLYTMDN 740
>ref|NP_222794.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99]
Length = 352
Score = 24.3 bits (51), Expect = 0.79
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 2 INNNKAMLEQYNVSKLASEEKLKALAQNKND 32
I NK +LE +S+LA EE LK L K++
Sbjct: 61 IKENKELLEDKELSELAKEE-LKILEIQKSE 90
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 23.9 bits (50), Expect = 1.0
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 14 VSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPL-YPKAPGDEIYA 72
VS ++ L+ N+ D FE + L F DS+ + P PK P E
Sbjct: 435 VSVISHNNSLQTFLDNQQDLKNSLNALGFEGVDLSFSQDSSKEQQAPKDQPKEPFKEQEL 494
Query: 73 SMYKDTLSKELSGN 86
+ K+ K N
Sbjct: 495 TPLKENALKSYQEN 508
>ref|NP_222749.1| putative [Helicobacter pylori J99]
Length = 137
Score = 23.9 bits (50), Expect = 1.0
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 12 YNVSKLASEEKLKALAQNKNDKLLKEQTDSFEAL----LLKFMLDSAMKMDNPLYPKAPG 67
Y ++ EEK KAL + D KE + L L+ +LD A D L +
Sbjct: 52 YGQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASES 111
Query: 68 DEIY 71
+ +Y
Sbjct: 112 NLLY 115
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 23.1 bits (48), Expect = 1.8
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 3 NNNKAMLEQYNVSKLASEEKLKALA-QNKNDKLLKEQTDSF 42
N N+A+LE+ L EK LA + K + Q+ S+
Sbjct: 285 NRNEALLERMRSYTLLKNEKYNQLANETKQQTQTRSQSQSY 325
>ref|NP_223507.1| putative abc transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 533
Score = 23.1 bits (48), Expect = 1.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 67 GDEIYASMYKDTLSKELSGNFGYSEMLFNFLKEQE 101
G + + +S+E+SG + LFNF K+ E
Sbjct: 381 GATVLKGYFPQNVSEEISGEETLYQWLFNFNKKIE 415
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 23.1 bits (48), Expect = 1.8
Identities = 15/51 (29%), Positives = 19/51 (36%)
Query: 21 EKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYPKAPGDEIY 71
E L + A+ DK+ K D E L +D NP EIY
Sbjct: 61 ESLSSYARQFLDKVGKPNVDKIEGLTPAIAIDQKTTSKNPRSTVGTITEIY 111
>ref|NP_223891.1| putative [Helicobacter pylori J99]
Length = 595
Score = 22.7 bits (47), Expect = 2.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 47 LKFMLDSAMKMDNPLY 62
+KF D+ MK+ +PLY
Sbjct: 130 VKFSFDTIMKLGSPLY 145
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 22.7 bits (47), Expect = 2.3
Identities = 18/55 (32%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Query: 10 EQYNVSKLASEEKLKALAQNKNDKLLKEQTDSFEALLLKFMLDSAMKMDNPLYPK 64
+Q + L++EE +A N + LLKE T+S + L S +DNP K
Sbjct: 145 QQDSPQDLSNEEATEA---NHFEDLLKESTESSDNHLDNPTESSDNHLDNPTETK 196
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 22.3 bits (46), Expect = 3.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 13 NVSKLASEEKLKALAQNKNDKLLK 36
N+S A EEKLK L + K LK
Sbjct: 492 NLSSEAKEEKLKELKTELDKKNLK 515
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 21.9 bits (45), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
Query: 3 NNNKAMLEQYNVS-KLASEEKLKALAQNKNDKLLKEQ 38
NN ++E+ N K ASEE + N+KL EQ
Sbjct: 48 NNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQ 84
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 21.6 bits (44), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (58%), Gaps = 3/32 (9%)
Query: 5 NKAMLEQYNVSKLASEEKLKALAQNKNDKLLK 36
N ++LEQ N KLA KL++ A+ + LK
Sbjct: 225 NLSLLEQANAEKLA---KLESEAKVSEQEFLK 253
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 21.6 bits (44), Expect = 5.1
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 47 LKFMLDSAMKMDNPLYPKAPGDEIYASMY 75
+K + S + +++ PK DE+ A+MY
Sbjct: 403 IKAISASKLALEDEYKPKVSLDEVIATMY 431
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 21.6 bits (44), Expect = 5.1
Identities = 11/27 (40%), Positives = 15/27 (54%)
Query: 2 INNNKAMLEQYNVSKLASEEKLKALAQ 28
IN K ++ N +K E+K KAL Q
Sbjct: 563 INALKDCIKNDNATKAELEDKTKALTQ 589
>ref|NP_223840.1| 50S RIBOSOMAL PROTEIN L10 [Helicobacter pylori J99]
Length = 164
Score = 21.2 bits (43), Expect = 6.7
Identities = 16/46 (34%), Positives = 23/46 (49%)
Query: 35 LKEQTDSFEALLLKFMLDSAMKMDNPLYPKAPGDEIYASMYKDTLS 80
LK Q DS +ALL+ ++K L KA I + K+TL+
Sbjct: 17 LKSQFDSAKALLICDYKGLSVKKLEALRNKARIQGIKVQVIKNTLA 62
>ref|NP_223346.1| putative [Helicobacter pylori J99]
Length = 276
Score = 20.8 bits (42), Expect = 8.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 59 NPLYPKAPGDEIYASMYKDTLSKEL 83
N K P ++ Y+S++ + L KE+
Sbjct: 248 NDFLAKFPKEKSYSSVFINALEKEI 272
>ref|NP_222928.1| putative [Helicobacter pylori J99]
Length = 326
Score = 20.8 bits (42), Expect = 8.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 58 DNPLYPKAPGDEIYASMYKDTLSKELSGNF 87
D+P P PG +++ S+ + K+ +G +
Sbjct: 117 DDPDTPAVPGQKMHCSVMAYDVIKKAAGMY 146
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 20.8 bits (42), Expect = 8.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 19 SEEKLKALAQNKNDKLLKEQ 38
+E KL+ L + K++KLL+ +
Sbjct: 413 TENKLRILLEAKDEKLLESK 432
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.128 0.338
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,983
Number of Sequences: 1491
Number of extensions: 5228
Number of successful extensions: 20
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of query: 105
length of database: 494,079
effective HSP length: 65
effective length of query: 40
effective length of database: 397,164
effective search space: 15886560
effective search space used: 15886560
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 42 (20.8 bits)