BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644877|ref|NP_207047.1| hypothetical protein
[Helicobacter pylori 26695]
(179 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222955.1| putative [Helicobacter pylori J99] 331 8e-93
ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helico... 29 0.064
ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter ... 27 0.32
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 27 0.42
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 26 0.54
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 0.71
ref|NP_224018.1| putative [Helicobacter pylori J99] 25 0.93
ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 25 0.93
ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter ... 25 1.2
ref|NP_224070.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERME... 25 1.2
ref|NP_223721.1| putative [Helicobacter pylori J99] 24 2.1
ref|NP_223055.1| putative [Helicobacter pylori J99] 23 4.6
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 4.6
ref|NP_223990.1| putative [Helicobacter pylori J99] 23 6.0
ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE P... 23 6.0
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 22 7.9
ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [H... 22 7.9
ref|NP_223526.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 22 7.9
>ref|NP_222955.1| putative [Helicobacter pylori J99]
Length = 179
Score = 331 bits (848), Expect = 8e-93
Identities = 169/179 (94%), Positives = 174/179 (96%)
Query: 1 MASLAFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFL 60
MASLAF+QAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNR ASYI TAAFL
Sbjct: 1 MASLAFVQAFLESFKGFLSQATLISVLIASVLILFCAILLLLALLLRNRWASYITTAAFL 60
Query: 61 GAFLSMPFVLNILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEV 120
GAFLSMPFVLN+LLTQAIYPIETRILHANPLSYSNAFSLQVGVKN SKF+LNKCVLRLEV
Sbjct: 61 GAFLSMPFVLNVLLTQAIYPIETRILHANPLSYSNAFSLQVGVKNISKFSLNKCVLRLEV 120
Query: 121 LKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQVSLFCL 179
LKNPHNFVEE AFKWFVKKSYEK FKEKILP+ESKVFSFFID+YPYSKTAPYQVSLFCL
Sbjct: 121 LKNPHNFVEERAFKWFVKKSYEKTFKEKILPEESKVFSFFIDDYPYSKTAPYQVSLFCL 179
>ref|NP_222835.1| TRANSLATION INITIATION FACTOR IF-3 [Helicobacter pylori J99]
Length = 203
Score = 29.3 bits (64), Expect = 0.064
Identities = 16/84 (19%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 72 ILLTQAIYPIETRILHANPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEVLKNPHNFVEEH 131
+L++ + P +++ N Y N ++ K + + + L ++ +N N+ +H
Sbjct: 47 VLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKH 106
Query: 132 AFKWFVKKSYEKIFKEKILPKESK 155
A + F++ + FK + +ES+
Sbjct: 107 A-REFIESNKHVKFKVVLKGRESQ 129
>ref|NP_224102.1| putative PHOSPHATE PERMEASE [Helicobacter pylori J99]
Length = 533
Score = 26.9 bits (58), Expect = 0.32
Identities = 18/67 (26%), Positives = 32/67 (46%), Gaps = 2/67 (2%)
Query: 103 VKNHSKFTLNKCVLRLEVLKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKE--SKVFSFF 160
++ K L + L LE LK N K KKS +K++KE+++ + K+ + +
Sbjct: 449 LERFDKANLKEKSLMLESLKKSKNTAIALELKKKEKKSLKKVYKEEVIKRSILKKIVTAW 508
Query: 161 IDNYPYS 167
+ P S
Sbjct: 509 LVTVPVS 515
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 26.6 bits (57), Expect = 0.42
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 108 KFTLNKCVLRLEVLKNPHNFVEEHAF 133
+F LN V++ VL+N H ++ HAF
Sbjct: 85 RFYLNGSVVKESVLENAHQQLQSHAF 110
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 26.2 bits (56), Expect = 0.54
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 5 AFIQAFLESFKGFLSQATLISVLIASVLILFCAILLLL 42
+F +AFL GFL+ + +L +L+L C I + L
Sbjct: 208 SFFRAFLMGLLGFLACFFGVRILSFKLLVLACCIAIAL 245
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.8 bits (55), Expect = 0.71
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 16/66 (24%)
Query: 89 NPLSYSNAFSLQVGVKNHSKFTLNKCVLRLEVLKNPHNFVEEHAFKWFVKKSYEKIFKEK 148
NP+ ++NA +L G KN K N + A K F K +KI K+K
Sbjct: 6 NPI-HTNANALNSGAKNEVKDAKN---------------APKSASKDFSKILNQKISKDK 49
Query: 149 ILPKES 154
PKES
Sbjct: 50 TAPKES 55
>ref|NP_224018.1| putative [Helicobacter pylori J99]
Length = 178
Score = 25.4 bits (54), Expect = 0.93
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 17 FLSQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFLGAFLSMPFVLNILLTQ 76
FL L+++L+ +L L + LLL LLL L + L L + +L +LLT
Sbjct: 70 FLLFPLLLTLLLTLLLTLL--LTLLLTLLLTLLLTLLLTLLLTLLLTLLLTLLLTLLLTL 127
Query: 77 AIYPIET 83
+ P T
Sbjct: 128 SYNPCHT 134
>ref|NP_223967.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 1035
Score = 25.4 bits (54), Expect = 0.93
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 22 TLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFLGAFLSM 66
TL ++ SV I+F I+ L L + L + AFLG + M
Sbjct: 859 TLQYIVPVSVFIIFILIVFALKNLTNSLLCFFTLPFAFLGGLIFM 903
>ref|NP_224198.1| putative REGULATORY PROTEIN [Helicobacter pylori J99]
Length = 374
Score = 25.0 bits (53), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 139 KSYEKIFKEKILPKESKVFSFFIDNYPYSKTAPYQ 173
KSY F+ ILP + ++ +I PY K A ++
Sbjct: 269 KSYNHQFRYNILPSKDPTYTIYI---PYEKLALFK 300
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 25.0 bits (53), Expect = 1.2
Identities = 21/62 (33%), Positives = 29/62 (45%), Gaps = 7/62 (11%)
Query: 106 HSKFTLNKCVLRLEVLKNPHNFVEEHAFKWFVKKSYEKIFKEK--ILPKESKVFSFFIDN 163
HS+ K VL V N EHA V K +K+F +K I P ++K FS + +
Sbjct: 18 HSRREAEKLVLEGRVKIN-----HEHAKLASVVKENDKVFLDKRLIKPLKNKKFSVLVYH 72
Query: 164 YP 165
P
Sbjct: 73 KP 74
>ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter
pylori J99]
Length = 326
Score = 25.0 bits (53), Expect = 1.2
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 18 LSQATLISVLIASVLIL--FCAILLLLALLLRNR-----LASYIATAAFLGAFLS 65
L A I+V+ +++ IL F AIL LA+L NR + S + + L AFLS
Sbjct: 102 LGVAMAIAVVESNIAILAFFGAILPSLAVLAMNRVLGNSVLSLVLSGVVLSAFLS 156
>ref|NP_223721.1| putative [Helicobacter pylori J99]
Length = 223
Score = 24.3 bits (51), Expect = 2.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 118 LEVLKNPHNFVEEHAFKWFVKKSYEKIFKEKILPKE 153
L+ +K N+++EH ++V SY K K+ K+
Sbjct: 99 LKNVKELRNYIKEHFSAYYVNISYSKEHNFKVGDKD 134
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 23.1 bits (48), Expect = 4.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 125 HNFVEEHAFKWFVKKSYEKIFKEKILPKESKVFSFFIDNY 164
H V E + +VKK E F +KI+ K+ + F +++
Sbjct: 129 HLEVLEMIYDRYVKKLEELGFYDKIMQKKPTILKEFFEHF 168
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 23.1 bits (48), Expect = 4.6
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 94 SNAFSLQVGV-----KNHSKFTLNKCVLRLEVLKNPHNFVEEHA 132
S F Q GV K H+ L C E L+N H F ++ A
Sbjct: 186 SGMFVFQAGVFLDELKKHAPTILKGCERAFESLENTHFFEQKIA 229
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 22.7 bits (47), Expect = 6.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1 MASLAFIQAFLESFKGFLSQATLISVLIASVLI 33
+A L QAF E FK L + + +++ + LI
Sbjct: 411 IAHLNLSQAFKEEFKKPLKENDTLKIILTNTLI 443
>ref|NP_222984.1| GUANOSINE-5'-TRIPHOSPHATE,3'-DIPHOSPHATE PYROPHOSPHATASE
[Helicobacter pylori J99]
Length = 484
Score = 22.7 bits (47), Expect = 6.0
Identities = 18/67 (26%), Positives = 27/67 (39%), Gaps = 3/67 (4%)
Query: 104 KNHSKFTLNKCVLRLEVLKNPHNFVEEHAFKWFVK---KSYEKIFKEKILPKESKVFSFF 160
+ HS+ +CV EVL H E++ F + S KI + K S F
Sbjct: 322 EKHSQKVKKECVKLFEVLSPLHKIDEKYLFHLKIAGELASMGKILSVYLAHKHSAYFILN 381
Query: 161 IDNYPYS 167
+Y +S
Sbjct: 382 ALSYGFS 388
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 22.3 bits (46), Expect = 7.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 113 KCVLRLEVLKNPHNFVEE 130
K +RLEV KN HN +E
Sbjct: 217 KNAVRLEVEKNAHNLNDE 234
>ref|NP_223602.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT B [Helicobacter pylori J99]
Length = 289
Score = 22.3 bits (46), Expect = 7.9
Identities = 10/21 (47%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
Query: 123 NPHNFVEEHAFKWFVKKSYEK 143
+P NFV++ ++K +KK YEK
Sbjct: 85 DPLNFVDKESYKQRIKK-YEK 104
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 22.3 bits (46), Expect = 7.9
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 103 VKNHSKFTLNKCVLRLEVLKNPHNFVEEHAFKWFVKKSYEKIF 145
V+N F + R + L+ N + + WF S E +F
Sbjct: 150 VRNFYAFIKHDMPKRQKALEGKENLPKRDSLPWFATISQESMF 192
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 22.3 bits (46), Expect = 7.9
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 19 SQATLISVLIASVLILFCAILLLLALLLRNRLASYIATAAFLGAFLSMPFVLNILLTQAI 78
S T + LI ++ L +L L L N Y +FLG+ PF + L+ +
Sbjct: 83 SDFTYLLPLIIVLVALVYGVLFYLLLYFEN---PYFRLLSFLGSSFIHPFGFDWLVPDSF 139
Query: 79 Y 79
+
Sbjct: 140 F 140
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.329 0.141 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,630
Number of Sequences: 1491
Number of extensions: 7741
Number of successful extensions: 57
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 21
length of query: 179
length of database: 494,079
effective HSP length: 72
effective length of query: 107
effective length of database: 386,727
effective search space: 41379789
effective search space used: 41379789
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 46 (22.3 bits)