BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644881|ref|NP_207051.1| hypothetical protein
[Helicobacter pylori 26695]
(38 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 65 3e-13
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 23 1.7
ref|NP_223614.1| putative [Helicobacter pylori J99] 22 3.7
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 22 3.7
ref|NP_222777.1| putative [Helicobacter pylori J99] 22 3.7
ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylo... 21 4.8
ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helico... 21 4.8
ref|NP_224188.1| putative [Helicobacter pylori J99] 21 6.3
ref|NP_223334.1| putative [Helicobacter pylori J99] 21 6.3
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 20 8.2
ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99] 20 8.2
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 65.1 bits (157), Expect = 3e-13
Identities = 30/31 (96%), Positives = 30/31 (96%)
Query: 1 MKNTNTKEIKNTRMKKGYSQYHALKKGLLKT 31
MKNTNTKEIKNTRMKKGYSQYH LKKGLLKT
Sbjct: 1 MKNTNTKEIKNTRMKKGYSQYHTLKKGLLKT 31
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 348
Score = 22.7 bits (47), Expect = 1.7
Identities = 10/32 (31%), Positives = 17/32 (52%)
Query: 1 MKNTNTKEIKNTRMKKGYSQYHALKKGLLKTL 32
+ NT +KEI+ ++ Y L+ LL+ L
Sbjct: 42 INNTQSKEIQGVVKERSYRASQGLESDLLENL 73
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 21.6 bits (44), Expect = 3.7
Identities = 7/23 (30%), Positives = 16/23 (69%)
Query: 7 KEIKNTRMKKGYSQYHALKKGLL 29
+++KNT ++ Y ++ +KK +L
Sbjct: 129 RDLKNTPEEENYREFEEIKKMVL 151
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 21.6 bits (44), Expect = 3.7
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 9 IKNTRMKKGYSQYHALKKGLL 29
++NT++ ++ YH L+K LL
Sbjct: 701 VRNTKVYGKFAAYHHLQKYLL 721
>ref|NP_222777.1| putative [Helicobacter pylori J99]
Length = 78
Score = 21.6 bits (44), Expect = 3.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 1 MKNTNTKEIKNTRM 14
+ NTNT +IK+T+M
Sbjct: 23 LANTNTLDIKDTQM 36
>ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylori J99]
Length = 438
Score = 21.2 bits (43), Expect = 4.8
Identities = 10/29 (34%), Positives = 16/29 (54%)
Query: 6 TKEIKNTRMKKGYSQYHALKKGLLKTLCF 34
++++K T KG +H L GLL + F
Sbjct: 358 SEKLKITARPKGIGWWHILGAGLLAGIGF 386
>ref|NP_223301.1| POLYNUCLEOTIDE ADENYLYLTRANSFERASE [Helicobacter pylori J99]
Length = 402
Score = 21.2 bits (43), Expect = 4.8
Identities = 9/26 (34%), Positives = 16/26 (60%)
Query: 1 MKNTNTKEIKNTRMKKGYSQYHALKK 26
+KN + EI RM+KG+ ++ K+
Sbjct: 76 LKNHQSYEITTFRMEKGHIKHRKPKE 101
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 20.8 bits (42), Expect = 6.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 7 KEIKNTRMKKGYSQYHALKK 26
+ +KN + KKG +H K
Sbjct: 180 ERLKNVKKKKGVELFHKANK 199
>ref|NP_223334.1| putative [Helicobacter pylori J99]
Length = 263
Score = 20.8 bits (42), Expect = 6.3
Identities = 8/9 (88%), Positives = 9/9 (99%)
Query: 2 KNTNTKEIK 10
+NTNTKEIK
Sbjct: 124 QNTNTKEIK 132
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 20.4 bits (41), Expect = 8.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 3 NTNTKEIKNTRMKKGYSQYHALKK 26
N+N+ + +K GY Q+ K+
Sbjct: 524 NSNSNNMNGFGVKMGYKQFFGKKR 547
>ref|NP_222876.1| putative PROTEASE [Helicobacter pylori J99]
Length = 422
Score = 20.4 bits (41), Expect = 8.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1 MKNTNTKEIKNTRMKKGYSQYHALKKGLLKTL 32
++N KE K+G HAL K + T+
Sbjct: 36 LRNRAGKEFTLETFKEGIDYAHALDKKVYATI 67
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,572
Number of Sequences: 1491
Number of extensions: 1151
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 38
length of database: 494,079
effective HSP length: 14
effective length of query: 24
effective length of database: 473,205
effective search space: 11356920
effective search space used: 11356920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)