BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644658|ref|NP_206827.1| outer membrane protein
(omp2) [Helicobacter pylori 26695]
(711 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 1177 0.0
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 905 0.0
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 737 0.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 675 0.0
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 595 e-171
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 595 e-171
ref|NP_223820.1| putative Outer membrane function [Helicoba... 514 e-147
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 404 e-114
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 402 e-113
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 279 2e-76
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 149 2e-37
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 134 1e-32
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 129 2e-31
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 128 6e-31
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 127 7e-31
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 124 1e-29
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 123 2e-29
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 105 3e-24
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 103 1e-23
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 103 2e-23
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 103 2e-23
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 101 6e-23
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 100 2e-22
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 95 5e-21
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 91 1e-19
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 89 4e-19
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 82 4e-17
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 64 1e-11
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 60 1e-10
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 52 5e-08
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 49 3e-07
ref|NP_223588.1| putative outer membrane protein [Helicobac... 48 7e-07
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 48 7e-07
ref|NP_224132.1| putative [Helicobacter pylori J99] 47 1e-06
ref|NP_223078.1| putative Outer membrane protein [Helicobac... 45 5e-06
ref|NP_223725.1| putative outer membrane protein [Helicobac... 43 3e-05
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 34 0.011
ref|NP_223273.1| putative [Helicobacter pylori J99] 30 0.28
ref|NP_222990.1| putative [Helicobacter pylori J99] 30 0.28
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 28 0.80
ref|NP_223662.1| putative [Helicobacter pylori J99] 26 3.0
ref|NP_223560.1| putative [Helicobacter pylori J99] 26 4.0
ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori... 26 4.0
ref|NP_222768.1| putative TYPE II restriction enzyme [Helic... 26 4.0
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 25 5.2
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 25 8.9
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 1177 bits (3044), Expect = 0.0
Identities = 610/716 (85%), Positives = 636/716 (88%), Gaps = 31/716 (4%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL
Sbjct: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
T+YS LN LIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM
Sbjct: 61 TNYSVLNALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
Query: 121 SYSISVCGPGSDKNKNGGVQTFENVPSN--GGTTIACDSF-YEPGKWSGISTENYAKINK 177
SY+IS CGPG D +KNGGVQTF N PSN GGTTI C + YEPG +S +STENYAKINK
Sbjct: 121 SYAISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTGYEPGPYSILSTENYAKINK 180
Query: 178 AYQIIQKAFGASGQDIPALSDTK-ELNFEIKGKKNDSVQPGERWKFPWTNGKFVSVKWVN 236
AYQIIQKAFG+SG+DIPALSDT EL F I K N + TN N
Sbjct: 181 AYQIIQKAFGSSGKDIPALSDTNTELKFTIN-KNNGNTN---------TNN--------N 222
Query: 237 GKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNVAGGNSLWAGID-KGD 295
G E+I NNAQ LL+QASTI+TTLN ACPW++NGGAG + G SLW GI KGD
Sbjct: 223 G------EEIVTKNNAQVLLEQASTIITTLNSACPWINNGGAGGASSG-SLWEGIYLKGD 275
Query: 296 GSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPYKDANFAQSMF 355
GSACGIFKNEISAIQDMIKNA IAVEQSKIV ANAQNQ NLDTGK FNPYKDANFAQSMF
Sbjct: 276 GSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQNQRNLDTGKTFNPYKDANFAQSMF 335
Query: 356 ANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTVTSNTWGAG 415
ANA+AQAEILNRAQAVVKDFERIPA FVKDSLGVCHE +G+LRGTPSGTVT NTWGAG
Sbjct: 336 ANAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEV-QNGHLRGTPSGTVTDNTWGAG 394
Query: 416 CAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLP 475
CAYVGETVTNLK+SIAHFGDQAERIHNARNLAYTLANFS QY+KLGEHYDSITAA+SSLP
Sbjct: 395 CAYVGETVTNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYQKLGEHYDSITAAISSLP 454
Query: 476 DAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNN 535
DAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNN
Sbjct: 455 DAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNN 514
Query: 536 GAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVN 595
GAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFN+ SDVWTYGVGSDLLVN
Sbjct: 515 GAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVN 574
Query: 596 FINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLR 655
FINDKATKHNKISFGAFGGI LAGTSWLNSQYVNLANVNNYYKAKINT+NFQFLFNLGLR
Sbjct: 575 FINDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLR 634
Query: 656 TNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
NLAR K D++AQHG+ELG KIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY
Sbjct: 635 MNLARKKHRATDNAAQHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 690
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 905 bits (2339), Expect = 0.0
Identities = 452/714 (63%), Positives = 555/714 (77%), Gaps = 17/714 (2%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTS 62
KK L L+L L L AED+GF+ SAG +IGE+AQMVKNTKGIQ LS++YE+LNNLL +
Sbjct: 2 KKTLLLSLS--LSFGLHAEDDGFYASAGIRIGEAAQMVKNTKGIQQLSENYEKLNNLLNN 59
Query: 63 YSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSY 122
Y+ LNTL++ S+DP+A+N+AR NL +S +NL++ K NSPAYQAVLLALNAA GLWQV SY
Sbjct: 60 YNTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKANSPAYQAVLLALNAAVGLWQVTSY 119
Query: 123 SISVCGPGSDKNKNGGVQTFENVPSNGGTTIACDSFYEPGKWSGISTENYAKINKAYQII 182
+ + CGPGS++N NGG+QTF NVP TTI C+S+YEPG IST+NYA INKAYQII
Sbjct: 120 AFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYYEPGHGGPISTKNYAIINKAYQII 179
Query: 183 QKAFGASGQDIPALSD-TKELNFEIKGKKNDSVQPGERWKFPWTNGKFVSVKWVNGKYEE 241
QKA A+G+ IP LS+ T +L+F I G K +P ++ +PW++GK +S W
Sbjct: 180 QKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNKKLVYPWSHGKAISTSWNATITAP 239
Query: 242 IKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNVAGGNSLWAGIDKGDGSACGI 301
E+I +N+AQELLKQAS I+TTLN ACP NGG+G WAGI G+G+ CG+
Sbjct: 240 TTENINTTNSAQELLKQASIIITTLNSACPNFQNGGSG-------YWAGI-SGNGTMCGM 291
Query: 302 FKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPYKDANFAQSMFANARAQ 361
FKNEISAIQ MI NA+ AV Q+KIV+ N QNQ++LD GK FNPY DA+FA+SM NA+AQ
Sbjct: 292 FKNEISAIQGMIANAQEAVAQAKIVSENTQNQNSLDAGKPFNPYTDASFAESMLKNAQAQ 351
Query: 362 AEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTVTSNTWGAGCAYVGE 421
AEILN+A+ VVK+FE+IP AFV DSLGVC+E G RGT G TSNTWGAGCAYVG+
Sbjct: 352 AEILNQAEQVVKNFEKIPTAFVNDSLGVCYEV-QGGERRGTNPGQTTSNTWGAGCAYVGQ 410
Query: 422 TVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLPDAQSLQ 481
T+TNLKNSIAHFG Q ++I A N+A TL NF +Y +LG Y+SIT ALS++P+AQSLQ
Sbjct: 411 TITNLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQ 470
Query: 482 NVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGI 541
N VSKK NP SPQGI NYY++ N ++Q+Q+ +QELG NPFR+ G++ +S TNNGAMNGI
Sbjct: 471 NAVSKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIV-SSQTNNGAMNGI 529
Query: 542 GFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKA 601
G QVGYKQFFG+ ++WGARYYGF DYNH + KS FFNS SDVWTYG G+D L NFINDKA
Sbjct: 530 GIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKA 589
Query: 602 T----KHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTN 657
T K+NK+S G FGGI LAGTSWLNS+YVNLA +NN Y AK+N +NFQFLFN+G+R N
Sbjct: 590 TNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMN 649
Query: 658 LARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
LAR K+ +DH+AQHG+ELG+KIPTINTNYYS +G L+YRRLYSVYLNYVFAY
Sbjct: 650 LARPKKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 703
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 737 bits (1903), Expect = 0.0
Identities = 411/757 (54%), Positives = 514/757 (67%), Gaps = 59/757 (7%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
MKK LSLTLGSLLVS LSAED+GF+ S GYQIGE+AQMV NTKGIQDLSD YE LNNLL
Sbjct: 1 MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQDLSDRYESLNNLL 60
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
YS LNTLI+ SADP+AIN R NL ASAKNLI DK NSPAYQAVLLA+NAA G W V+
Sbjct: 61 NRYSTLNTLIKLSADPSAINAVRENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVV 120
Query: 121 SYSISVCGPGSDKNKNGGVQT-FENVPSNGGTTIACD-SFYEPGKWSGISTENYAKINKA 178
Y ++ CG ++ K+ +T F N P T+I C + + PG + +S EN+ K+N+A
Sbjct: 121 GY-VTQCGGNANGQKSISSKTIFNNEPGYRSTSITCSLNGHSPGYYGPMSIENFKKLNEA 179
Query: 179 YQIIQKAFGASGQDIPALSDTKELNFEIK----------GKKNDSVQ--------PGERW 220
YQI+Q A + +PAL KE N ++ G N S Q G +
Sbjct: 180 YQILQTAL---KRGLPAL---KENNGKVNVTYTYTCSGDGNNNCSSQVTGVNNQKDGTKT 233
Query: 221 KFPWTNGKFV----SVKWVNGK---------YEEIKEDIK-VSNNAQELLKQASTILTTL 266
K +GK V S K V+ + Y EI ++ V ++AQ LL QAST++ T+
Sbjct: 234 KIQTIDGKSVTTTISSKVVDSRADGNTTGVSYTEITNKLEGVPDSAQALLAQASTLINTI 293
Query: 267 NEACPWLSNGGAGNVAGGNSLWAGIDKGDGSACGIFKNEISAIQDMIKNAEIAVEQSKIV 326
N ACP+ A N + N+ G CG F EISAIQ MI +A+ V Q+ ++
Sbjct: 294 NNACPYFH---ASNSSEANA--PKFSTTTGKICGAFSEEISAIQKMITDAQELVNQTSVI 348
Query: 327 TANAQNQH-NLDTGKAFNPYKDANFAQSMFANARAQAEILNRAQAVVKDF--ERIPAA-- 381
+ Q + GK FNP+ DA+FAQ M ANA AQA++LN A+ V + ER+
Sbjct: 349 NEHEQTTPVGNNNGKPFNPFTDASFAQGMLANASAQAKMLNLAEQVGQAINPERLSGTFQ 408
Query: 382 -FVKDSLGVCHEKGS--DGNLRGTPSGTVTSNTWGAGCAYVGETVTNLKNSIAHFGDQAE 438
FVK L C+ + G +G+ GTVT+ T+ +GCAYVG+T+TNLKNSIAHFG Q +
Sbjct: 409 NFVKGFLATCNNPSTAGTGGTQGSAPGTVTTQTFASGCAYVGQTITNLKNSIAHFGTQEQ 468
Query: 439 RIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLPDAQSLQNVVSKKTNPNSPQGIQD 498
+I A N+A TL NF +Y +LG Y+SIT ALS++P+AQSLQN VSKK NP SPQGI
Sbjct: 469 QIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDT 528
Query: 499 NYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWG 558
NYY++ N ++Q+Q+ +QELG NPFR+ G++ +S TNNGAMNGIG QVGYKQFFG+ ++WG
Sbjct: 529 NYYLNQNSYNQIQTINQELGRNPFRKVGIV-SSQTNNGAMNGIGIQVGYKQFFGQKRKWG 587
Query: 559 ARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKAT----KHNKISFGAFGG 614
ARYYGF DYNH + KS FFNS SDVWTYG G+D L NFINDKAT K+NK+S G FGG
Sbjct: 588 ARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGG 647
Query: 615 IQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGM 674
I LAGTSWLNS+YVNLA +NN Y AK+N +NFQFLFN+G+R NLAR K+ +DH+AQHG+
Sbjct: 648 IALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGI 707
Query: 675 ELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
ELG+KIPTINTNYYS +G L+YRRLYSVYLNYVFAY
Sbjct: 708 ELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 675 bits (1742), Expect = 0.0
Identities = 373/715 (52%), Positives = 479/715 (66%), Gaps = 54/715 (7%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTS 62
KK L L+L + S L+AEDNGFF+SAGYQIGE+AQMVKNT ++ LSD+YE L+NLLT+
Sbjct: 2 KKTLLLSLSAS--SLLNAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLTN 59
Query: 63 YSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSY 122
++ LN + ++ P+ IN A NL A+ + LI +K NSPAYQAV LALNAA GLW V++Y
Sbjct: 60 FNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIAY 119
Query: 123 SISVCGPGSDKNKNGGVQ--TFENVPSNGGTTIACD-SFYEPGKWSGISTENYAKINKAY 179
++ CGPG N G Q TFE P + ++I C+ + Y G +S EN+ K+N+AY
Sbjct: 120 NVQ-CGPG-----NSGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAY 173
Query: 180 QIIQKAFGASGQDIPALSDT-KELNFEIKGKKNDSVQPGERWKFPWTNGKFVSVKWVNGK 238
Q IQ+A P L K++ I + TNG S
Sbjct: 174 QTIQQAL-KQDSGFPVLDSAGKQVTITITTQ---------------TNGANKS------- 210
Query: 239 YEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNVAGGNSLWAGIDKGDGSA 298
E +N+AQ LL++AS +++ L CPW+++ N G + W G+D G+
Sbjct: 211 --ETTTTTTTTNDAQTLLQEASKMISVLTTNCPWVNHNQGQN---GGAPW-GLDTA-GNV 263
Query: 299 CGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPYKDAN--FAQSMFA 356
C +F E SA+ MIKNA+ V Q++ + Q+N + + FNPY A+ FAQ+M
Sbjct: 264 CQVFATEFSAVTSMIKNAQEIVTQAQ----SLNQQNNQNAPQDFNPYTSADRAFAQNMLN 319
Query: 357 NARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTVTSNTWGAGC 416
+A+AQA+IL A + KD IP+ F+ + L CH G G L P VT+NTWGAGC
Sbjct: 320 HAQAQAKILELADQMKKDLNTIPSQFITNYLAACHNGG--GTL---PDAGVTNNTWGAGC 374
Query: 417 AYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLPD 476
AYV ET+T L NS+AHFG QAE+I + LA T+ +F G L Y+SIT S+ P+
Sbjct: 375 AYVEETITALNNSLAHFGTQAEQIKQSELLARTILDFRGSLSNLNNTYNSITTTASNTPN 434
Query: 477 AQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNG 536
+ L+N++S+ TNPN+P G+Q Y ++ + +SQ+ S +QELG NPFRR GLI+ S TNNG
Sbjct: 435 SPFLKNLISQSTNPNNPGGLQAVYQVNQSAYSQLLSATQELGHNPFRRVGLIS-SQTNNG 493
Query: 537 AMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNF 596
AMNGIG QVGYKQFFG+ +RWG RYYGF DYNH Y KS FFNS SDV+TYGVG+D+L NF
Sbjct: 494 AMNGIGVQVGYKQFFGEKRRWGLRYYGFFDYNHAYIKSSFFNSASDVFTYGVGTDVLYNF 553
Query: 597 INDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRT 656
INDK TK++KISFG FGGI LAGTSWLNSQYVNLA NN+Y AK+N +NFQFLFNLGLR
Sbjct: 554 INDKTTKNSKISFGVFGGIALAGTSWLNSQYVNLATFNNFYSAKMNVANFQFLFNLGLRM 613
Query: 657 NLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
NLA+NK+ +DH+AQHG+ELGVKIPTINTNYYSLLGT LQYRRLYSVYLNYVFAY
Sbjct: 614 NLAKNKKKASDHAAQHGVELGVKIPTINTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 595 bits (1535), Expect = e-171
Identities = 339/728 (46%), Positives = 458/728 (62%), Gaps = 51/728 (7%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
+KK +L+ SL+ S AED+GF++S GYQIGE+ Q VKNT +Q+L+D Y+ L+NLL
Sbjct: 3 IKKSLFALSF-SLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLL 61
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
Y+ LN+L+ ++ P+AI A NL++SA NL + SPAYQAV LALNAA G+WQV+
Sbjct: 62 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 121
Query: 121 SYSISVCGPGSDKN----KNGGVQTFENVPS------NGGTTIACDSFYEPGKWSGISTE 170
++ IS CGPG + +NGGV++F+N P+ +G TT C+ G +S+
Sbjct: 122 AFGIS-CGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSS 180
Query: 171 NYAKINKAYQIIQKAFGAS-GQDIPALSDTKELNFEIKGKKNDSVQPGERWKFPWTNGKF 229
Y +N AYQ IQ A + G +PAL+ +K N + + + P + +P NG +
Sbjct: 181 EYQVLNTAYQTIQTALNQNQGGGMPALNSSK--NMVVNINQTFTKNPTTEYTYPDGNGNY 238
Query: 230 VSVKWVNGKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNVAGGNSLWA 289
S G I+ I N+A+ LL+QA+TI+ L P ++ GG GG +
Sbjct: 239 YS----GGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHVNGGGGAWGFGGKT--- 291
Query: 290 GIDKGDGSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPY--KD 347
G+ IF + +AI +MIKNA+ +E+++ + AN Q + FNPY KD
Sbjct: 292 ------GNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQ--ITQPDNFNPYTSKD 343
Query: 348 ANFAQSMFANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTV 407
FAQ M A AQAEIL+ AQ V +F I +D E+ + G+ +G +
Sbjct: 344 TQFAQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDL-----EECTAGS-----AGVI 393
Query: 408 TSNTWGAGCAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSI 467
NT+G+GCA+V ET+ +L+ A++G+Q ++ R L+ T+ NF LG +I
Sbjct: 394 NDNTYGSGCAFVKETLNSLEQHTAYYGNQ---VNQDRALSQTILNFKEALSTLGNDSKAI 450
Query: 468 TAALSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGL 527
+ +S+LP+A+SLQN+ NPNSP+G+ Y +D++ ++Q+Q+ +QELG NPFRR G+
Sbjct: 451 NSGISNLPNAKSLQNMTHATQNPNSPEGLL-TYSLDTSKYNQLQTVAQELGKNPFRRIGV 509
Query: 528 IAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYG 587
I NNGAMNGIG Q GYKQFFGK + WG RYYGF DYNH Y KS FFNS SDVWTYG
Sbjct: 510 INYQN-NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYG 568
Query: 588 VGSDLLVNFINDKAT----KHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINT 643
VG D L NFINDK T K+NK+S G FGG LAGTSWLNSQ VNL +N Y A ++
Sbjct: 569 VGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSA 628
Query: 644 SNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSV 703
SNFQFLF+LGLR NLAR K+ +DH+AQHGMELGVKIPTINT+YYS +G L+YRRLYSV
Sbjct: 629 SNFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSV 688
Query: 704 YLNYVFAY 711
YLNYVFAY
Sbjct: 689 YLNYVFAY 696
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 595 bits (1535), Expect = e-171
Identities = 339/728 (46%), Positives = 458/728 (62%), Gaps = 51/728 (7%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
+KK +L+ SL+ S AED+GF++S GYQIGE+ Q VKNT +Q+L+D Y+ L+NLL
Sbjct: 3 IKKSLFALSF-SLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLL 61
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
Y+ LN+L+ ++ P+AI A NL++SA NL + SPAYQAV LALNAA G+WQV+
Sbjct: 62 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 121
Query: 121 SYSISVCGPGSDKN----KNGGVQTFENVPS------NGGTTIACDSFYEPGKWSGISTE 170
++ IS CGPG + +NGGV++F+N P+ +G TT C+ G +S+
Sbjct: 122 AFGIS-CGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSS 180
Query: 171 NYAKINKAYQIIQKAFGAS-GQDIPALSDTKELNFEIKGKKNDSVQPGERWKFPWTNGKF 229
Y +N AYQ IQ A + G +PAL+ +K N + + + P + +P NG +
Sbjct: 181 EYQVLNTAYQTIQTALNQNQGGGMPALNSSK--NMVVNINQTFTKNPTTEYTYPDGNGNY 238
Query: 230 VSVKWVNGKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNVAGGNSLWA 289
S G I+ I N+A+ LL+QA+TI+ L P ++ GG GG +
Sbjct: 239 YS----GGSSIPIQLKISSVNDAENLLQQAATIINVLTTQNPHVNGGGGAWGFGGKT--- 291
Query: 290 GIDKGDGSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPY--KD 347
G+ IF + +AI +MIKNA+ +E+++ + AN Q + FNPY KD
Sbjct: 292 ------GNVMDIFGDSFNAINEMIKNAQAVLEKTQQLNANENTQ--ITQPDNFNPYTSKD 343
Query: 348 ANFAQSMFANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTV 407
FAQ M A AQAEIL+ AQ V +F I +D E+ + G+ +G +
Sbjct: 344 TQFAQEMLNRANAQAEILSLAQQVADNFHSIQGPIQQDL-----EECTAGS-----AGVI 393
Query: 408 TSNTWGAGCAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSI 467
NT+G+GCA+V ET+ +L+ A++G+Q ++ R L+ T+ NF LG +I
Sbjct: 394 NDNTYGSGCAFVKETLNSLEQHTAYYGNQ---VNQDRALSQTILNFKEALSTLGNDSKAI 450
Query: 468 TAALSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGL 527
+ +S+LP+A+SLQN+ NPNSP+G+ Y +D++ ++Q+Q+ +QELG NPFRR G+
Sbjct: 451 NSGISNLPNAKSLQNMTHATQNPNSPEGLL-TYSLDTSKYNQLQTVAQELGKNPFRRIGV 509
Query: 528 IAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYG 587
I NNGAMNGIG Q GYKQFFGK + WG RYYGF DYNH Y KS FFNS SDVWTYG
Sbjct: 510 INYQN-NNGAMNGIGVQAGYKQFFGKKRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYG 568
Query: 588 VGSDLLVNFINDKAT----KHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINT 643
VG D L NFINDK T K+NK+S G FGG LAGTSWLNSQ VNL +N Y A ++
Sbjct: 569 VGMDALYNFINDKNTNFLGKNNKLSVGLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSA 628
Query: 644 SNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSV 703
SNFQFLF+LGLR NLAR K+ +DH+AQHGMELGVKIPTINT+YYS +G L+YRRLYSV
Sbjct: 629 SNFQFLFDLGLRMNLARPKKKDSDHAAQHGMELGVKIPTINTDYYSFMGAELKYRRLYSV 688
Query: 704 YLNYVFAY 711
YLNYVFAY
Sbjct: 689 YLNYVFAY 696
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 514 bits (1325), Expect = e-147
Identities = 335/742 (45%), Positives = 409/742 (54%), Gaps = 136/742 (18%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTS 62
KK + L+L +L S L AEDNG F+S GYQIGE+ Q VKN +Q LSD YE+L+ LL +
Sbjct: 5 KKTILLSL-TLAASLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDVYEQLSKLLAN 63
Query: 63 YSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSY 122
+ ++ AIN A NLN SAK L NSPAYQA LLAL +A GLW M Y
Sbjct: 64 DNGTSS----KTSAQAINQAVNNLNESAKTLAGGTTNSPAYQATLLALRSALGLWNSMGY 119
Query: 123 SISVCG-----PGSDKNKNGGVQTFENVPSNG-GTTIAC------DSFYEPG-------- 162
++ VCG PG + KN F NG GTTI C + + P
Sbjct: 120 AV-VCGGYIKKPGENNQKN-----FHYTDENGNGTTINCGGSTNSNGTHSPNGTNTLKAD 173
Query: 163 KWSGISTENYAKINKAYQIIQKAFGASGQDIPALSDTKELNFEIKGKKNDSVQPGERWKF 222
K +S E Y KI++AYQI+ KA +G P S ++L + K+ ++
Sbjct: 174 KNVSLSIEQYEKIHEAYQILSKALKQAGL-APLNSKGEKLEAHVTTSKDQQGTSSDQ--- 229
Query: 223 PWTNGKFVSVKWVNGKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWL-----SNGG 277
SV I +N+AQ LL QA TI+ TL + CP L SNGG
Sbjct: 230 ---TTTTTSV-------------IDTTNDAQNLLTQAQTIVNTLKDYCPMLIAKSSSNGG 273
Query: 278 AGNVAGGNSLWAGIDKGDGSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLD 337
+ AG G ++C F E SAI DMI NA+ V++++ + AN N+
Sbjct: 274 TNGANTPSWQTAG---GGKNSCATFGAEFSAISDMISNAQKIVQETQQLNANQPK--NIT 328
Query: 338 TGKAFN---PYKDANFAQSMFANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKG 394
FN P AQSM NA++Q EIL A V DF+++ + ++KD +G C G
Sbjct: 329 QPNNFNLNSPGSLTALAQSMLKNAQSQTEILKLANQVASDFDKLSSGYLKDYIGKCDVSG 388
Query: 395 -SDGNLRGTPSGTVTSNTWGAGCAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANF 453
S N+ TP T TWG GCA V ET+T+LK S F +Q
Sbjct: 389 VSSSNM--TPQNMNT--TWGKGCAGVEETLTSLKASTTDFNNQTT--------------- 429
Query: 454 SGQYKKLGEHYDSITAALSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSR 513
L AQ+L N ++
Sbjct: 430 ------------------PQLDQAQTLANTLT---------------------------- 443
Query: 514 SQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNK 573
QELG+NPF+R G+I S TNNGAMNG+G Q GYKQFFG+ +RWG RYYGF DYNHTY K
Sbjct: 444 -QELGNNPFKRVGIIG-SQTNNGAMNGLGVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIK 501
Query: 574 SQFFNSDSDVWTYGVGSDLLVNFINDKAT----KHNKISFGAFGGIQLAGTSWLNSQYVN 629
S FFNS SDV TYGVGSDLL NFINDK T K+NKIS G FGGI LAGTSWLNSQ+VN
Sbjct: 502 SSFFNSSSDVLTYGVGSDLLFNFINDKNTNFLGKNNKISVGLFGGIALAGTSWLNSQFVN 561
Query: 630 LANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYS 689
L ++N Y AK+NT+NFQFLFNLGLRTNLAR K+ +DHSAQHGMELGVKIPTINTNYYS
Sbjct: 562 LKTISNVYSAKVNTANFQFLFNLGLRTNLARPKKKDSDHSAQHGMELGVKIPTINTNYYS 621
Query: 690 LLGTTLQYRRLYSVYLNYVFAY 711
LGT L+YRRLYSVYLNYVFAY
Sbjct: 622 YLGTKLEYRRLYSVYLNYVFAY 643
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 404 bits (1039), Expect = e-114
Identities = 267/727 (36%), Positives = 382/727 (51%), Gaps = 105/727 (14%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
MKK L SL S L AEDNGFFVSAGYQIGE+ QMVKNT +++L+D YE+L+ L
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNDKYEQLSQSL 60
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
++L I+ + + A+NNA +L + A N +K+ SP Y + + W +
Sbjct: 61 AQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKETSPIYNTAQAVITSVLAFWSLY 120
Query: 121 SYSISVCGPGSDKNKNGGVQTFENVPSNGGTTIACDSFYEPGKWSGI-----STENYAKI 175
+ G +F N G+ + G +G+ S E Y K+
Sbjct: 121 A---------------GNALSFHVTGLNDGSNSPLGRIHRDGNCTGLQQCFMSKETYDKM 165
Query: 176 NKAYQIIQKAFGASGQDIPALSDTKELNFEIKGKKNDSVQPGERWKFPWTNGKFVSVKWV 235
+ +QKA G ++ ALS+ N S
Sbjct: 166 KTLAENLQKAQG----NLCALSECSS---------NQS---------------------- 190
Query: 236 NGKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSN--GGAGNVAGGNSLWAGIDK 293
NG + ++ + +L++Q + N ++N GAG +
Sbjct: 191 NGGKTSMTTALQTAQQLMDLIEQTKVSMVWKNIVIAGVTNKPNGAGAITS---------T 241
Query: 294 GDGSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDT---GKAFNPYKDANF 350
G + +F N I A+ +++ A +Q+ H L T +A + F
Sbjct: 242 GHVTDYAVFNN-IKAMLPILQQA----------LTLSQSNHTLSTQLQARAMGSQTNREF 290
Query: 351 AQSMFANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSD-GNLRGTPSGTVTS 409
A+ ++A A+ Q +IL+ A ++ F IP KD L +L TP+
Sbjct: 291 AKDIYALAQNQKQILSNASSIFNLFNSIP----KDQLKYLENAYLKVPHLGKTPTNPYRQ 346
Query: 410 NTWGAGCAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYD---S 466
N + + + +++++A++G+ R+ +A ++A + N ++ Y+ +
Sbjct: 347 NV------NLNKEINAVQDNVANYGN---RLDSALSVAKDVYNLKSNQTEIVTTYNDAKN 397
Query: 467 ITAALSSLPDAQ-SLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRA 525
++ +S LP Q ++ N+V + + Q Y I+ S + + +NPF++
Sbjct: 398 LSEEISKLPYNQVNVTNIVMSPKDSTAGQ-----YQINPEQQSNLNQALAAMSNNPFKKV 452
Query: 526 GLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWT 585
G+I+ S NNGA+NG+G QVGYKQFFG++KRWG RYYGF DYNH Y KS FFNS SD+WT
Sbjct: 453 GMIS-SQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWT 511
Query: 586 YGVGSDLLVNFINDKAT-KHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTS 644
YG GSDLLVNFIND T K+NK+S G FGGIQLAGT+WLNSQY+NL NN Y AK+N S
Sbjct: 512 YGGGSDLLVNFINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNAS 571
Query: 645 NFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVY 704
NFQFLFNLGLRTNLA K+ ++ SAQHG+ELG+KIPTINTNYYS LGT L+YRRLYSVY
Sbjct: 572 NFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSVY 631
Query: 705 LNYVFAY 711
LNYVFAY
Sbjct: 632 LNYVFAY 638
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 402 bits (1034), Expect = e-113
Identities = 263/717 (36%), Positives = 383/717 (52%), Gaps = 72/717 (10%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
MKK L SL S L AEDNGFFVSAGYQIGE+ QMVKNT +++L++ YE+L+ L
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNEKYEQLSQYL 60
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
++L I+ + + +N++ L + N N SP + AV + + G W +
Sbjct: 61 NQVASLKQSIQNANNIELVNSSLNYLKSFTNNNYNSTTQSPIFNAVQAVITSVLGFWSLY 120
Query: 121 SYS-ISVCGPGSDKNKNGGVQTFENVPSNGGTTIACDSFYEPGKWSGISTENYAKINKAY 179
+ + ++ D K VQ N P + T + S E + + + K+ +
Sbjct: 121 AGNYLTFFVVNKDTQKPASVQG--NPPFS--TIVQNCSGIENCAMNQTTYDKMKKLAEDL 176
Query: 180 QIIQKAFGASGQDIPALSDTKELNFEIKGKKNDSVQPGERWKFPWTNGKFVSVKWVNGKY 239
Q Q+ ++ ALS T G+ S
Sbjct: 177 QAAQQNATTKANNLCALSGCAT-----------------------TQGQNPS-------- 205
Query: 240 EEIKEDIKVSNNAQELLKQASTILTTLNEACPW--LSNGGAGNVAGGNSLWAGIDK-GDG 296
+NA L +Q ++ A W + G NV+G ID G
Sbjct: 206 -------STVSNALNLAQQLMDLIANTKTAMMWKNIVIAGVSNVSGA------IDSTGYP 252
Query: 297 SACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPYKDANFAQSMFA 356
+ +F N I A+ +++ A + + ++A+ Q Q TG NP FA+ ++A
Sbjct: 253 TQYAVFNN-IKAMIPILQQAVTLSQSNHTLSASLQAQA---TGSQTNP----KFAKDIYA 304
Query: 357 NARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRGTPSGTVTSNTWGAGC 416
A+ Q ++++ AQ + F IP KD + L+ +G +N +
Sbjct: 305 FAQNQKQVISYAQDIFNLFSSIP----KDQYRYLEK----AYLKIPNAGKTPTNPYRQE- 355
Query: 417 AYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLPD 476
+ + + ++N+++++G++ + + Y L + + + +++ +S LP
Sbjct: 356 VNLNQEIQTIQNNVSYYGNRVDAALSVAKDVYNLKSNQTEIVTTYNNAKNLSQEISKLPY 415
Query: 477 AQ-SLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNN 535
Q + +++++ + N+P Q NY I+ S + + +NPF++ G+I+ S NN
Sbjct: 416 NQVNTKDIITLPYDQNAPAAGQYNYQINPEQQSNLSQALAAMSNNPFKKVGMIS-SQNNN 474
Query: 536 GAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVN 595
GA+NG+G QVGYKQFFG++KRWG RYYGF DYNH Y KS FFNS SD+WTYG GSDLLVN
Sbjct: 475 GALNGLGVQVGYKQFFGESKRWGLRYYGFFDYNHGYIKSSFFNSSSDIWTYGGGSDLLVN 534
Query: 596 FINDKAT-KHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGL 654
FIND T K+NK+S G FGGIQLAGT+WLNSQY+NL NN Y AK+N SNFQFLFNLGL
Sbjct: 535 FINDSITRKNNKLSVGLFGGIQLAGTTWLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGL 594
Query: 655 RTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
RTNLA K+ ++ SAQHG+ELG+KIPTINTNYYS LGT L+YRRLYSVYLNYVFAY
Sbjct: 595 RTNLATAKKKDSERSAQHGVELGIKIPTINTNYYSFLGTKLEYRRLYSVYLNYVFAY 651
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 279 bits (713), Expect = 2e-76
Identities = 185/509 (36%), Positives = 262/509 (51%), Gaps = 59/509 (11%)
Query: 222 FPWTNGKFVSVKWVNGKYEEIKEDIKVSNNAQELLKQASTILTTLNEACPWLSNGGAGNV 281
F +G ++SV + G+ ++ ++ + + +LT NE SN +
Sbjct: 15 FAENDGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTA 74
Query: 282 AGGNSLWAGIDKGDGSACGIFKNEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKA 341
ID + SA + +A Q + AV +++ +N N ++L + +
Sbjct: 75 QA-------IDNLEKSASRLKTTPNTANQAVSSALSSAVGMWQVIASNLAN-NSLSSSEY 126
Query: 342 FNPYKDANFAQSMFANARAQAEILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSDGNLRG 401
+ Q+ N +I N ++ I GV DG G
Sbjct: 127 EKLKATSQLLQNTLENKNNNLKIENDYDQLLTQASTIINTLQSQCPGV------DGG-NG 179
Query: 402 TPSGTVTSNTWGAGCAYVGET-------VTNLKNSIAHFGDQAERIHNARNLAYTLANFS 454
P G NT G CA G T + + K + A A N +N A+T A+F+
Sbjct: 180 KPWGI---NTSGNACAIFGSTFNAINSMIDSAKKAAADARRTAPESPNQQN-AFTNADFN 235
Query: 455 GQYKKL------------GEHYDSITAALSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYI 502
++ G++ ++I + P+++ Q++VS+ + +Y +
Sbjct: 236 KNLNQVSSVINDTISYLKGDNLETIYNTIQKTPNSKGFQSLVSRSSY---------SYSL 286
Query: 503 DSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYY 562
+ +SQ Q+ ++E G NPFR GLI S +NNGAMNG+G Q+GYKQFFGKNK +G RYY
Sbjct: 287 NETQYSQFQTTTKEFGHNPFRSVGLIN-SQSNNGAMNGVGVQLGYKQFFGKNKFFGIRYY 345
Query: 563 GFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSW 622
GF DYN+ Y KS FFNS S+V+TYG GSDLL+NFIN + ++ K+SFG FGGI LAGT+W
Sbjct: 346 GFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGSDRNRKVSFGIFGGIALAGTTW 405
Query: 623 LNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPT 682
LN+Q NL N+ Y AKIN +NFQFLFN GLR HG+ELGVKIPT
Sbjct: 406 LNNQSANLKITNSAYSAKINNTNFQFLFNTGLRL-----------QGIHHGIELGVKIPT 454
Query: 683 INTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
INTNYYS +G L YRRLYS+YLNYV AY
Sbjct: 455 INTNYYSFMGAKLAYRRLYSLYLNYVLAY 483
Score = 90.9 bits (224), Expect = 1e-19
Identities = 59/127 (46%), Positives = 80/127 (62%), Gaps = 12/127 (9%)
Query: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
MKK L SL+VS+L AE++G ++S GYQIGE+AQMVKNT IQ +S++YE LNNLL
Sbjct: 1 MKKTILL----SLMVSSLFAENDGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLL 56
Query: 61 TSYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSP--AYQAVLLALNAAAGLWQ 118
T Y+ L + A A NL SA L K +P A QAV AL++A G+WQ
Sbjct: 57 TRYNELKQTASNTDSSTA--QAIDNLEKSASRL----KTTPNTANQAVSSALSSAVGMWQ 110
Query: 119 VMSYSIS 125
V++ +++
Sbjct: 111 VIASNLA 117
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 149 bits (377), Expect = 2e-37
Identities = 78/184 (42%), Positives = 104/184 (56%), Gaps = 7/184 (3%)
Query: 531 STTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGS 590
+++ +G +NG G QVGYKQFFG K G RYY F DY T S ++++TYG G+
Sbjct: 292 TSSQHGVINGFGIQVGYKQFFGSKKNIGLRYYAFFDYGFTQLGSLNSAVKANIFTYGAGT 351
Query: 591 DLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLF 650
D L N + ++ G FGGIQ+AG +W +S + N +K +NFQFLF
Sbjct: 352 DFLWNIFR-RVFSDQSLNVGVFGGIQIAGNTWDSSL---RGQIENSFKEYPTPTNFQFLF 407
Query: 651 NLGLRTNLA---RNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNY 707
NLGLR + A + + A S QHGME GVKIP IN Y G + YRRLY+ Y+NY
Sbjct: 408 NLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLKANGADVDYRRLYAFYINY 467
Query: 708 VFAY 711
+
Sbjct: 468 TIGF 471
Score = 35.0 bits (79), Expect = 0.007
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 MKKKFLSLTL-GSLLVSALSAEDNGFFVSAGYQIGESAQMVKN 42
+KK L L SL +S AED+GF++ GYQIG + Q + N
Sbjct: 24 LKKGLLKTALLFSLPLSVALAEDDGFYMGVGYQIGGAQQNINN 66
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 134 bits (336), Expect = 1e-32
Identities = 79/241 (32%), Positives = 127/241 (51%), Gaps = 10/241 (4%)
Query: 477 AQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNG 536
+Q+L+ ++ KT Q + D N Q+++ GS P + AA +T +G
Sbjct: 1001 SQTLRQLLGDKTFFMVQQKLIDAMINARNQVQNAQNQANNYGSQPVL-SQYAAAKSTQHG 1059
Query: 537 AMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNF 596
NG+G +GYK FFGK ++ G R+Y F DY + + ++++ YGVG+D L N
Sbjct: 1060 MSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGFSEIGLANQSVKANIFAYGVGTDFLWNL 1119
Query: 597 INDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAK-INTSNFQFLFNLGLR 655
+ ++FG F G+QL G +WL+S + ++N+ A I+++NFQ N G+R
Sbjct: 1120 FR-RTYNTKALNFGLFAGVQLGGATWLSSLRQQI--IDNWGNANDIHSTNFQVALNFGVR 1176
Query: 656 TNLARNKRIGADHS-----AQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFA 710
TN A KR +Q +E G+K+P IN Y + G + YRRLY+ Y+NY+
Sbjct: 1177 TNFAEFKRFAKKFHNQGVISQKSVEFGIKVPLINQAYLNSAGADVSYRRLYTFYINYIMG 1236
Query: 711 Y 711
+
Sbjct: 1237 F 1237
Score = 42.0 bits (97), Expect = 5e-05
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQD---LSDSYERLNNL 59
KKF+ L+ +L AEDNG+++S GYQIG + Q + N + +++ ++ + N+
Sbjct: 6 KKFIPF----FLIGSLLAEDNGWYMSVGYQIGGTQQFINNKQLLENQNIINSITQSAINI 61
Query: 60 LTSYSALNTLIRQS---ADPNAINNARGNLNASAKNLIN 95
+ L TL Q+ A ++N GN N++N
Sbjct: 62 AGPTTGLITLSSQTVIDALGYGVSNTVGNQLEGISNILN 100
Score = 38.9 bits (89), Expect = 5e-04
Identities = 76/363 (20%), Positives = 144/363 (38%), Gaps = 47/363 (12%)
Query: 304 NEISAIQDMIKNAEIAVEQSKIVTANAQNQHNLDTGKAFNPYKDANFAQSMFANARAQAE 363
+++ ++ + +K +E ++++ + N +Q +P ++ S+ NA+ Q
Sbjct: 483 SQVWSVYNSLKTSEENLQKNAKILCNNGSQSGT------SPCNSSSGGLSISGNAQLQNI 536
Query: 364 ILNRAQAVVKDFERIPAAFVKDSLGVCHE---KGSDGNLRGTPSGTVTSNTWGAGCAYVG 420
+ + A+ +K + V +E K ++ N P+ +++T V
Sbjct: 537 LSPTNGTTTNTQAKSNASKLKAMVMVNNEEEAKTTNFNQSSGPTTQSSNSTVMGALNTVL 596
Query: 421 ETVTNLKNSI-AHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAALSSLPDAQS 479
+ V+N + SI + F +Q I N Y +N P+
Sbjct: 597 QNVSNFQQSIQSAFQNQENNIQAWANALYNTSN----------------------PNGNQ 634
Query: 480 LQNVVSKKTNPNSPQGIQ---DNYYIDSNIHSQVQSRSQEL---GSNPFRRAGLIAASTT 533
QN+ TN N IQ + Y + + I+ QV + L + +G +ASTT
Sbjct: 635 SQNLT---TNNNQDLRIQLRANFYQLINTINQQVPTDMNALINQSQQTQQTSG--SASTT 689
Query: 534 NNGAMNGIGFQVGY-KQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDL 592
NN +G+G + Q + +K + + + Y T +Q +S TY V
Sbjct: 690 NNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQ-TQATTQNGSSGGSNITYNVQQIT 748
Query: 593 LVN--FINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLF 650
L + +N T ++ G+ GG GTS +N+ Y L + ++ N+SN
Sbjct: 749 LTSGGLLNQIITNLKSVNGGSNGGSSGNGTSQINTAYQMLTDASDGKLGTYNSSNSSNSS 808
Query: 651 NLG 653
N G
Sbjct: 809 NSG 811
Score = 25.8 bits (55), Expect = 4.0
Identities = 28/123 (22%), Positives = 52/123 (41%), Gaps = 6/123 (4%)
Query: 2 KKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLT 61
++++ + L + L LS + QI Q ++N + S + N +
Sbjct: 278 QQQYNNTLLMNTLQGELSTNNQNNPNGCANQIQCLEQFIQNLTPLAATPTSTNQANQQVQ 337
Query: 62 SYSA-LNTLIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
+ + L ++ + D NAINN NLN +++ N AYQ+ + N A +
Sbjct: 338 AIAQKLQSVAINALDNNAINNTTYNLNN-----LHNALNFQAYQSTIEQYNNALKQISWI 392
Query: 121 SYS 123
S+S
Sbjct: 393 SFS 395
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 129 bits (325), Expect = 2e-31
Identities = 105/342 (30%), Positives = 164/342 (47%), Gaps = 44/342 (12%)
Query: 401 GTPSGTVTSNTWGA----GCAYVGETVT------NLKNSIAHFGDQAERIHNARNLAYTL 450
GT + TS+T GA G Y + + N+ N+ A+ Q E + A N A
Sbjct: 192 GTATANSTSSTSGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVAA 251
Query: 451 ANFSGQYKKLGEHYDSITAALSSLPD-AQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQ 509
+ ++ + T + + D +Q + N ++K T S +N I+SN +
Sbjct: 252 NIGNKEFNSA-----AFTGLVQGIIDQSQLVYNELTKNTISGSAV---NNAGINSNQANA 303
Query: 510 VQSRSQELGS----------------NPFRRAGLI----AASTTNNGAMNGIGFQVGYKQ 549
VQ R+ +L + N R + A ++ +NG +VGYKQ
Sbjct: 304 VQGRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKVGYKQ 363
Query: 550 FFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKHNKISF 609
FFGK + G RYYGF YN + ++ ++TYGVG+D+L N I ++ ++ +
Sbjct: 364 FFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYN-IFSRSYQNRSVDM 422
Query: 610 GAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHS 669
G F GIQLAG ++ Q + N KIN ++FQFLF+ G+R N + H+
Sbjct: 423 GFFSGIQLAGETF---QSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHN 479
Query: 670 AQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
QH +E GV +PTI YY GTT++Y R YSVY +Y +++
Sbjct: 480 -QHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF 520
Score = 37.0 bits (84), Expect = 0.002
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 15/93 (16%)
Query: 1 MKKKFLSLTLGSLLVSALS-AEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNL 59
M KK +L L L +++S AED+G F + GYQ+G+ Q V+N G + SD R N
Sbjct: 1 MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAK--SDELARELNA 58
Query: 60 LTSYSALNTLIRQSADPNAINNARGNLNASAKN 92
+ + LN NN GN+ + N
Sbjct: 59 DVTNNILN------------NNTGGNVAGALSN 79
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 128 bits (321), Expect = 6e-31
Identities = 115/421 (27%), Positives = 188/421 (44%), Gaps = 55/421 (13%)
Query: 301 IFKNEISAIQDMIKNAEIAVEQ--SKIVTANAQNQ-HNLDTGKAFNPYKDANFAQSMFAN 357
++ + +I+ + +N + Q + +AN NQ L+T + Y ++ F N
Sbjct: 152 LYNEMVDSIKTLSQNISKNIFQGDNNTTSANLSNQLSELNTASVYLTYMNS------FLN 205
Query: 358 ARAQAEIL---NRAQAVVKDFERIPAAFVKD----SLGVCHEKGSDGNLRGTPSGTVTSN 410
A QA + N QA A+V ++G + G+ G N
Sbjct: 206 ANNQAGGIFQNNTNQAYENGVTAQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFN 265
Query: 411 TWGAGCAYVGETVTNLKNSIAHFGDQAERIHNARNLAYTLANFSGQYKKLGEHYDSITAA 470
+ AG + T+L +I + A + N N++ N +G G + D +
Sbjct: 266 SANAGNDLSAKEFTSLVQNIVNNSQNALTLANNANIS----NSTGYQVSYGGNIDQARST 321
Query: 471 LSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAA 530
Q L N +N ++V + + EL +NP+ A
Sbjct: 322 -------QLLNNT--------------------TNTLAKVTALNNELKANPWL-GNFAAG 353
Query: 531 STTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGS 590
+++ A NG ++GYKQFFG+NK G RYYGF YN + + ++ TYGVG+
Sbjct: 354 NSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGT 413
Query: 591 DLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLF 650
D+L N + ++ ++ G FGGIQLAG + Y++ + ++ + FQFLF
Sbjct: 414 DVLYN-VFSRSFGSRSLNAGFFGGIQLAGDT-----YISTLRNSPQLASRPTATKFQFLF 467
Query: 651 NLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFA 710
++GLR N K+ H+ QH +E+GV+IPTI YY G ++Y R YSVY Y +A
Sbjct: 468 DVGLRMNFGILKKDLKSHN-QHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYA 526
Query: 711 Y 711
+
Sbjct: 527 F 527
Score = 39.7 bits (91), Expect = 3e-04
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 6 LSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTSYSA 65
LSL L SL + + AE++G F++ GY++G+ Q VKN I+ E L LL S +
Sbjct: 28 LSLAL-SLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIK-----AEELAGLLNSTTT 81
Query: 66 LNTLIRQSADPNAINNARGNL 86
NT I + + GNL
Sbjct: 82 NNTNINIAGTGGNVAGTLGNL 102
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 127 bits (320), Expect = 7e-31
Identities = 87/269 (32%), Positives = 130/269 (47%), Gaps = 44/269 (16%)
Query: 470 ALSSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNP----FRRA 525
+L + + +Q + K + + +G ++ +Y+ I QV SQ + + P F
Sbjct: 19 SLVAAEGSTEVQKQLEKPKDYKAVKGEKNAWYL--GISYQVGQASQSVKNPPKSSEFNYP 76
Query: 526 GLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSD----- 580
T M G+G VGYKQFFG+ + +GARYYGF+DY H + SD
Sbjct: 77 KFPVGKTDYLAVMQGLGLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVC 136
Query: 581 ----------------SDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLN 624
SD++TYGVG D L N IN + SFG F G Q+AG SW N
Sbjct: 137 KLNEPCATKVGTMGNLSDMFTYGVGIDTLYNVINKE-----DASFGFFFGAQIAGNSWGN 191
Query: 625 SQYVNLANVNNYYKA--KINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPT 682
+ L + Y ++ + FQFLFNLG+RT++ +++ + GVKIPT
Sbjct: 192 TTGAFLETKSPYKHTSYSLDPAIFQFLFNLGIRTHIGQHQE----------FDFGVKIPT 241
Query: 683 INTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
IN Y++ + YRR YS+Y+ Y + +
Sbjct: 242 INVYYFNHGNLSFTYRRQYSLYVGYRYNF 270
Score = 28.9 bits (63), Expect = 0.47
Identities = 10/26 (38%), Positives = 18/26 (68%)
Query: 17 ALSAEDNGFFVSAGYQIGESAQMVKN 42
A+ E N +++ YQ+G+++Q VKN
Sbjct: 41 AVKGEKNAWYLGISYQVGQASQSVKN 66
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 124 bits (310), Expect = 1e-29
Identities = 65/181 (35%), Positives = 102/181 (55%), Gaps = 7/181 (3%)
Query: 527 LIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTY 586
L + + +MNG G ++GYKQFF K G RYYGF+DY + +++ TY
Sbjct: 302 LFSLKDYQSASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTY 361
Query: 587 GVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNF 646
GVG+D L N + +++ + + + G F G Q+AG +W N+ N+ + + + +S+F
Sbjct: 362 GVGTDFLYN-VYERSRRRERTTIGLFFGAQIAGQTW----STNVTNLLSGQRPDVKSSSF 416
Query: 647 QFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLN 706
QFLF+LG+RTN A+ H G+E GVKIP I Y++ G++ Y R +S Y+
Sbjct: 417 QFLFDLGVRTNFAKTN--FNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVG 474
Query: 707 Y 707
Y
Sbjct: 475 Y 475
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 123 bits (308), Expect = 2e-29
Identities = 78/227 (34%), Positives = 123/227 (53%), Gaps = 17/227 (7%)
Query: 489 NPNSPQ-------GIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGI 541
NP SP G+ + + + ++Q++ ++ F R L S +NN MNG
Sbjct: 476 NPYSPTAKTLMAYGLYRSKAVIGGVIDEMQTKVNQVYQMGFARNFLEHNSNSNN--MNGF 533
Query: 542 GFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVN-FINDK 600
G ++GYKQFFGK + +G RYYGF D+ + ++ + + +YG G+D L N F +
Sbjct: 534 GVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLVKATLSSYGAGTDFLYNVFTRKR 593
Query: 601 ATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLAR 660
T+ I G F GIQLAG +W + +++ + N+ K ++FQFLF+LG+RTN ++
Sbjct: 594 GTE--AIDIGFFAGIQLAGQTW-KTNFLDQVDGNH---LKPKDTSFQFLFDLGIRTNFSK 647
Query: 661 NKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNY 707
+Q G+E G+KIP + YY G T +YRR +S Y+ Y
Sbjct: 648 IAHQKRSRFSQ-GIEFGLKIPVLYHTYYQSEGVTAKYRRDFSFYVGY 693
Score = 30.8 bits (68), Expect = 0.12
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 3 KKFL--SLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNT--KGIQDLSDSYERLNN 58
KK+L S L ++ L AED+GFF+ YQ + Q V N+ QD S +Y R N
Sbjct: 8 KKWLIYSSLLPLFFLNPLMAEDDGFFMGVSYQTSLAVQRVDNSGLNASQDAS-TYIRQNA 66
Query: 59 LLTSYSAL 66
+ +A+
Sbjct: 67 IALESAAV 74
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 105 bits (263), Expect = 3e-24
Identities = 75/204 (36%), Positives = 105/204 (50%), Gaps = 50/204 (24%)
Query: 540 GIGFQVGYKQFFGKNKRWGARYYGFVDYNHT-----------------YNKSQFFNS--- 579
G GF+VGYKQFFGK K +G RYYGF DY H YN F +
Sbjct: 57 GPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLT 116
Query: 580 --DS-------DVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNL 630
DS +++TYGVG D L NF+N K N + FG GIQLAG SW S +
Sbjct: 117 ERDSYQGQYYINLFTYGVGLDTLWNFVN----KENMV-FGFVVGIQLAGDSWATSISKEI 171
Query: 631 AN-VNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYS 689
+ V ++ + + +NFQFL+ G+RT++A + +ELG+K+PTI +
Sbjct: 172 GSYVKHHSNSSYSPANFQFLWKFGVRTHIA----------IHNSLELGIKVPTITHRLFF 221
Query: 690 LL---GTTLQ--YRRLYSVYLNYV 708
+ G TLQ RR+Y+ ++Y+
Sbjct: 222 ITNEKGYTLQADVRRVYAFQISYL 245
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 103 bits (257), Expect = 1e-23
Identities = 83/255 (32%), Positives = 126/255 (48%), Gaps = 35/255 (13%)
Query: 477 AQSLQNVVSKKTNPNSPQGIQDNYYID--SNIHSQVQSRSQELGSNPFRRAGLIAASTTN 534
AQ+L+ + TNP N + + +S + S S ++ L +S +
Sbjct: 132 AQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQISNSLNALDPSSYSK 191
Query: 535 N-GAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSD------VWTYG 587
N +M G+G VGYK FF K K G RYY F DY Y F + D YG
Sbjct: 192 NVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYG--YTNFGFVGNGFDGLGKMNNHLYG 249
Query: 588 VGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNS---QYVNLAN-VNNY---YKAK 640
+G D L NFI D A KH+ + F + G LAG+SW+ S +V+ + +NNY Y+AK
Sbjct: 250 LGIDYLFNFI-DNAQKHSSVGF--YVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRAK 306
Query: 641 INTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSL----LGTTLQ 696
++TS FQ N G+R N+ R+ +G E+G+KIP ++Y L +L
Sbjct: 307 MHTSFFQIPLNFGVRVNVDRH----------NGFEMGLKIPLAVNSFYETHGKGLNASLF 356
Query: 697 YRRLYSVYLNYVFAY 711
++RL ++YV+++
Sbjct: 357 FKRLVMFNVSYVYSF 371
Score = 29.3 bits (64), Expect = 0.36
Identities = 28/97 (28%), Positives = 43/97 (43%), Gaps = 11/97 (11%)
Query: 5 FLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTSYS 64
FLSL SL +S AE+NG + S G++ S + N + + ER+ T +
Sbjct: 13 FLSL---SLFLSFSIAEENGAYASVGFEYSISHAVEHNNPFL-----NQERIQ---TISN 61
Query: 65 ALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSP 101
A N + + + N I N N L N+ K +P
Sbjct: 62 AQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTP 98
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 103 bits (256), Expect = 2e-23
Identities = 77/226 (34%), Positives = 117/226 (51%), Gaps = 40/226 (17%)
Query: 504 SNIHSQVQSRSQELGS-NPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYY 562
S++ SQ+ S L + +P ++ + N +M G+G VGYK FF K K G RYY
Sbjct: 163 SSLSSQIAQISNSLNALDP-------SSYSKNVSSMYGVGLSVGYKHFFTKKKNQGFRYY 215
Query: 563 GFVDYNHTYNKSQFFNSDSD------VWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQ 616
F DY Y F + D YG+G D L NFI D A KH+ + F + G
Sbjct: 216 LFYDYG--YTNFGFVGNGFDGLGKMNNHLYGLGIDYLFNFI-DNAQKHSSVGF--YVGFA 270
Query: 617 LAGTSWLNS---QYVNLAN-VNNY---YKAKINTSNFQFLFNLGLRTNLARNKRIGADHS 669
LAG+SW+ S +V+ + +NNY Y+AK++TS FQ N G+R N+ R+
Sbjct: 271 LAGSSWVGSGLGMWVSQMDFINNYLTDYRAKMHTSFFQIPLNFGVRVNVDRH-------- 322
Query: 670 AQHGMELGVKIPTINTNYYSL----LGTTLQYRRLYSVYLNYVFAY 711
+G E+G+KIP ++Y L +L ++RL ++YV+++
Sbjct: 323 --NGFEMGLKIPLAVNSFYETHGKGLNASLFFKRLVMFNVSYVYSF 366
Score = 30.0 bits (66), Expect = 0.21
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 2 KKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLT 61
+K LSL+L L +S AE+NG + S G++ S + N + + ER+ T
Sbjct: 4 QKTLLSLSL--LFLSYCIAEENGAYASVGFEYSISHAVEHNNPFL-----NQERIQ---T 53
Query: 62 SYSALNTLIRQSADPNAINNARGNLNASAKNLINDKKNSP 101
+A N + + + N I N N L N+ K +P
Sbjct: 54 ISNAQNKIYKLNQVKNEITNMPNTFNYINNALKNNAKLTP 93
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 103 bits (256), Expect = 2e-23
Identities = 67/193 (34%), Positives = 96/193 (49%), Gaps = 33/193 (17%)
Query: 537 AMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFN----------SDSDVWTY 586
A+NG GF VGYK FF K ++G RYYGF D+ +Y K +N S S ++ Y
Sbjct: 109 AINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGY 168
Query: 587 GVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNF 646
G G+D+L N + FG F G+ + GTSW + Y ++ Y+ + SNF
Sbjct: 169 GAGTDVL---FNPAIFNRENLHFGFFLGVAIGGTSWGPTNYY-FKDLAEEYRGSFHPSNF 224
Query: 647 QFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLL------GTTLQ--YR 698
Q L N G+ R+G H G E+G+KI TI NYY+ GTT + +
Sbjct: 225 QVLVNGGI--------RLGTKH---QGFEIGLKIQTIRNNYYTASADNVPEGTTYRFTFH 273
Query: 699 RLYSVYLNYVFAY 711
R Y+ Y Y+ ++
Sbjct: 274 RPYAFYWRYIVSF 286
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 101 bits (252), Expect = 6e-23
Identities = 67/213 (31%), Positives = 106/213 (49%), Gaps = 20/213 (9%)
Query: 504 SNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYG 563
+NIH + S + G + TN G+ NGIG +GY FF +K G RY+
Sbjct: 48 ANIHEVREVTSYQTGYTNVMTSINSVKKLTNMGS-NGIGLVMGYNHFFHPDKVLGLRYFA 106
Query: 564 FVD---YNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKHN-KISFGAFGGIQLAG 619
F+D Y Y K + +++ TYGVG D + NF + + + G FGGI +AG
Sbjct: 107 FLDWQGYGMRYPKGYY--GGNNMITYGVGVDAIWNFFQGSFYQDDIGVDIGVFGGIAIAG 164
Query: 620 TSW-LNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGV 678
SW + ++ L + N + ++ ++FQFLFN G K + D +H E+G
Sbjct: 165 NSWYIGNKGQELLGITN--SSAVDNTSFQFLFNFGF-------KALFVD---EHEFEIGF 212
Query: 679 KIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
K PT+N YY+ +Q RR+++ Y+ Y + +
Sbjct: 213 KFPTLNNKYYTTDALKVQMRRVFAFYVGYNYHF 245
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 99.8 bits (247), Expect = 2e-22
Identities = 78/255 (30%), Positives = 110/255 (42%), Gaps = 94/255 (36%)
Query: 535 NGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNK--------SQFFNSD--SDVW 584
N M G+G GYK F GK + +G RYYGF DY HT S F+ SD +D++
Sbjct: 150 NQPMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADMY 209
Query: 585 TYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQ------------------ 626
TYG G+D+L N I+ K + G F G+ AG +W N++
Sbjct: 210 TYGFGTDMLFNVIDKP-----KATAGFFVGVNFAGNTWTNNRVGYFKDGYVYGVNTDADA 264
Query: 627 YVNLA------------------NVNNYY-----KAKINTSNFQFLFNLGLRTNLARNKR 663
Y+ A N N+ Y AK+N + FQFL N+G+RTN+ +
Sbjct: 265 YMTNADGTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLVNVGIRTNIFEH-- 322
Query: 664 IGADHSAQHGMELGVKIPTINTNYYSLLGTTLQ--------------------------- 696
HG+E G+KIPT+ NY+ TT++
Sbjct: 323 --------HGIEFGIKIPTL-PNYFFKGSTTIRAKKQGPLENGNPTTITGAETNFSLTQT 373
Query: 697 YRRLYSVYLNYVFAY 711
RR YS+YL YV+ +
Sbjct: 374 LRRQYSMYLRYVYTF 388
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 95.1 bits (235), Expect = 5e-21
Identities = 65/193 (33%), Positives = 91/193 (46%), Gaps = 26/193 (13%)
Query: 531 STTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTY-----NKSQFFNSDSDV-- 583
+T N G M G+ GYK FFGK KR+G R YG+ YNH +K + S V
Sbjct: 71 NTNNYGQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVNN 130
Query: 584 WTYGVGSDLLVNFINDKATKHNKISFGAFG----GIQLAGTSWLNSQYVNLANVNNYYKA 639
+TYGVG D L NF K + F FG + G S+L SQ + + N A
Sbjct: 131 FTYGVGFDALYNFYESKEGYNTAGLFVGFGLGGDSFIVQGESYLKSQ-MQICNNTAGCSA 189
Query: 640 KINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLG----TTL 695
+NTS FQ G R+N +++ G+E+G K+P +Y G +
Sbjct: 190 SMNTSYFQMPVEFGFRSNFSKHS----------GIEVGFKLPLFTNQFYKERGVDGSVDV 239
Query: 696 QYRRLYSVYLNYV 708
Y+R +S+Y NY+
Sbjct: 240 FYKRNFSIYFNYM 252
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 90.9 bits (224), Expect = 1e-19
Identities = 73/248 (29%), Positives = 110/248 (43%), Gaps = 53/248 (21%)
Query: 502 IDSNIHSQVQSRSQELGSNPFRRAGLIAASTTN--------NGAMNGIGFQVGYKQFFG- 552
++SNI++ +G P A TN NGA+NG G VGYK+FF
Sbjct: 38 LNSNIYNTGDCTGSVVGCPPGLTANKHNPGGTNINWHSKYANGALNGFGLNVGYKKFFQF 97
Query: 553 -----KNKRWGARYYGFVDYNHTYNKSQFFNSDS---DVWTYGVGSDLLVNFINDKATKH 604
+K +G R YG DY H Q + + D+ ++GVGSDLL + I+
Sbjct: 98 KSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVSWGVGSDLLADIID-----K 152
Query: 605 NKISFGAFGGIQLAGTSWLNS-------QYV----------NLANVNNYYKAKINTSNFQ 647
+ SFG FGG+ + G +W +S Q + N N Y +T FQ
Sbjct: 153 DNASFGIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVCTPTYCNPNAPYSTNTSTVAFQ 212
Query: 648 FLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSL--LGTTLQY--RRLYSV 703
N G+R N+ ++ +G+E GV++P + + S T L Y +R YS+
Sbjct: 213 VWLNFGVRANIYKH----------NGVEFGVRVPLLINKFLSAGPNATNLYYHLKRDYSL 262
Query: 704 YLNYVFAY 711
YL Y + +
Sbjct: 263 YLGYNYTF 270
Score = 30.4 bits (67), Expect = 0.16
Identities = 14/35 (40%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 3 KKFLSL-TLGSLLVSALSAEDNGFFVSAGYQIGES 36
KKF++L L ++L S+L AE +G ++ YQ+G++
Sbjct: 2 KKFVALGLLSAVLSSSLLAEGDGVYIGTNYQLGQA 36
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 89.0 bits (219), Expect = 4e-19
Identities = 66/218 (30%), Positives = 98/218 (44%), Gaps = 48/218 (22%)
Query: 525 AGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYN---KSQFFNSDS 581
A + + N + G +GY+ FF K +G R YGF DY H + K+ +NS++
Sbjct: 42 ADINSQKQATNATIKGFDALLGYQFFF--EKHFGLRLYGFFDYAHANSIKLKNPNYNSEA 99
Query: 582 ---------------------------DVWTYGVGSDLLVNFINDKATKHNKISFGAFGG 614
++ TYG D++VN IN+ +S GAFGG
Sbjct: 100 AQVASQILGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVINNGI-----MSLGAFGG 154
Query: 615 IQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGM 674
IQLAG SWL + + ++FQFLFN+G R + ++ I
Sbjct: 155 IQLAGNSWLMATPSFEGILVEQALVSKKATSFQFLFNVGARLRILKHSSI---------- 204
Query: 675 ELGVKIPTINTN-YYSLLGTTLQYRRLYSVYLNYVFAY 711
E GVK P + N Y + + +RR+YS Y+NYVF +
Sbjct: 205 EAGVKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 82.4 bits (202), Expect = 4e-17
Identities = 60/172 (34%), Positives = 89/172 (50%), Gaps = 38/172 (22%)
Query: 540 GIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFIND 599
G+ F++G+ F NK +GAR YGF+D+ +N S ++ +++ TYG G DL+VN I
Sbjct: 53 GLNFKLGFVGF--ANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI-- 105
Query: 600 KATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLA 659
+K + G GG+QLAG +W+ + +N + FQFL+NLG R
Sbjct: 106 ---PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGGR---- 145
Query: 660 RNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
R+G D SA E GVK P +N + R YS Y++YVF +
Sbjct: 146 --MRVG-DRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
Score = 28.5 bits (62), Expect = 0.61
Identities = 15/37 (40%), Positives = 19/37 (50%)
Query: 17 ALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSY 53
AL+ E NGFF+ AGYQ G N + +D Y
Sbjct: 16 ALAGEVNGFFMGAGYQQGRYGPYNSNYSDWRHGNDLY 52
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 64.3 bits (155), Expect = 1e-11
Identities = 72/236 (30%), Positives = 108/236 (45%), Gaps = 52/236 (22%)
Query: 510 VQSRSQELG-SNPFRRAGLIAASTT-----NNGAMNGIGFQVGYKQFFGKNK--RW-GAR 560
+Q S L S F ++ +I + + N+ NG+G QVGYK + GK++ +W G R
Sbjct: 60 IQHNSSNLNLSQRFNKSQIIFSDSLSPVFKNSYVSNGLGVQVGYK-WVGKHEETKWFGFR 118
Query: 561 YYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGT 620
+ F D + + SQ S + TYG DLL+N N +K G GI AG
Sbjct: 119 WGLFYDLSASLYGSQESQSII-ISTYGTYMDLLLNAYNG-----DKFFAGFNLGIAFAGV 172
Query: 621 -SWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVK 679
L+ + + N + K+N + FQFL +LG+ R+G +H+ Q G G+K
Sbjct: 173 YDRLSDALLYQTLLQNTFGGKVNLNGFQFLVDLGV--------RLGNEHN-QFG--FGIK 221
Query: 680 IPTINTN-YYSL-----------------------LGTTLQYRRLYSVYLNYVFAY 711
IPT N YYS+ L + +RR YSVY NY +++
Sbjct: 222 IPTYYFNHYYSMNNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 60.5 bits (145), Expect = 1e-10
Identities = 62/232 (26%), Positives = 89/232 (37%), Gaps = 46/232 (19%)
Query: 520 NPFRRAGLIAASTTNNGAMNGI--GFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFF 577
N + + IA NG GI +GYK F GK + G R+ F Y S
Sbjct: 78 NAVKDSNKIANRFAGNGGSGGIFNELSLGYKYFLGKKRIIGFRHSLFFGYQLGGVGSVPG 137
Query: 578 NSDSDVWTYGVGSDLLVNFINDKATKHNKI------------------------------ 607
+ YG +DLL+N+ NDK +
Sbjct: 138 SGLIAFLPYGFNTDLLINWTNDKRASQEYVERRVKGLSIFYKDMTGRTLDADTLKRASRH 197
Query: 608 ----SFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNK- 662
S G G++L ++W S N+ + + K T FQ G+R +
Sbjct: 198 IIRKSSGLVIGMELGASTWFASN-----NLTPFNQVKSRTI-FQLQGKFGVRFSSDEYDI 251
Query: 663 -RIGAD-HSAQHGMELGVKIPTINTNYYS-LLGTTLQYRRLYSVYLNYVFAY 711
R G + + +ELGVK+P NYYS G L Y+R+ SVYLNY + +
Sbjct: 252 DRYGDENYLGGSSVELGVKVPAFKVNYYSDDYGDKLDYKRVVSVYLNYTYNF 303
Score = 27.3 bits (59), Expect = 1.4
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTS 62
KK L LTL L L AE NGF++ + G ++ I + + + LN +
Sbjct: 2 KKVLLLTLSLSLSFWLHAERNGFYLGLNFAEG---SYIQGQGSIGEKASAENALNQAIN- 57
Query: 63 YSALNTLIRQSADPNAINNARGNLNA 88
+A N+L + AI + + LNA
Sbjct: 58 -NAKNSLF---PNTKAIRDVQNALNA 79
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 52.0 bits (123), Expect = 5e-08
Identities = 48/193 (24%), Positives = 76/193 (38%), Gaps = 50/193 (25%)
Query: 546 GYKQFFGKNKRWGARYYGFVDYNHTY-----------------------NKSQFFNSDSD 582
GYKQFF K + +G R+Y +DY + + K Q + +
Sbjct: 109 GYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQIPKSYREKLQRKETFIN 168
Query: 583 VWTYGVGSDLLVNFINDKATKHNKISFGA-FGGIQLAGTSWLNSQYVNLANVNNYYKAKI 641
YGVG+D L K +FG G+ G +W + + K +
Sbjct: 169 AIFYGVGADFLY-----------KRAFGTLILGVNFVGETWFYETKI----FKQWAKDSL 213
Query: 642 NT---SNFQFLFNLGLRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYR 698
NT + FQ + N+G R +R K +E G +IP + +Y+ TL ++
Sbjct: 214 NTYRPNMFQVMLNVGYRYRFSRYK--------NWAIEFGARIPFLINDYFKTPLYTLHFK 265
Query: 699 RLYSVYLNYVFAY 711
R SVYL + +
Sbjct: 266 RNISVYLTSTYDF 278
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 49.3 bits (116), Expect = 3e-07
Identities = 42/153 (27%), Positives = 74/153 (47%), Gaps = 25/153 (16%)
Query: 501 YIDSNIHSQ------VQSRSQELGSNPFRRAGLIAASTTN--NGAMNGIGFQVGYKQFFG 552
Y+++++++Q + + SQ L S+ + T+ + G+ ++GY+++F
Sbjct: 539 YLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYF- 597
Query: 553 KNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFI----NDKATKHN--- 605
N G YG + YN+ +Q N +YGVG D+L +FI N+K K N
Sbjct: 598 -NDYLGLSSYGIIKYNY----AQANNEKIQQLSYGVGMDVLFDFITNYTNEKNPKSNLTK 652
Query: 606 ---KISFGAFGGIQ-LAGTSWLNSQYVNLANVN 634
S G FGG++ L + +L +QY N+N
Sbjct: 653 KVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLN 685
Score = 25.8 bits (55), Expect = 4.0
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 616 QLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNK 662
QL + L + NL++ NY A +NT +F + +L+ +K
Sbjct: 519 QLIDQNALPVDFTNLSSQTNYLNASLNTQDFATTMLSAISQSLSSSK 565
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 48.1 bits (113), Expect = 7e-07
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 34/154 (22%)
Query: 495 GIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMN----------GIGFQ 544
G Q NY +++++++Q + S + ++ + +S TN+ N G+ +
Sbjct: 459 GSQTNYNLNASLNTQDLANSM---LSTIQKT-FVTSSVTNHHFSNASQSFRSPILGVNAK 514
Query: 545 VGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKH 604
+GY+ +F N G YYG + YN+ ++ N +YG G DLL++FI + K+
Sbjct: 515 IGYQNYF--NDFIGLAYYGIIKYNY----AKAVNQKVQQLSYGGGIDLLLDFITTYSNKN 568
Query: 605 N----------KISFGAFGGIQLAGTSWLNSQYV 628
+ SFG FGG++ NS YV
Sbjct: 569 SPTGIQTKRNFSSSFGIFGGLR----GLYNSYYV 598
Score = 32.7 bits (73), Expect = 0.033
Identities = 28/85 (32%), Positives = 43/85 (49%), Gaps = 16/85 (18%)
Query: 1 MKKKFLSLTLGSLLVSALSA-EDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNL 59
M+K F+ L LL SAL A E NGFF+ AG++ G +G Q + N
Sbjct: 1 MRKLFIPL----LLFSALEANEKNGFFIEAGFETG-------LLEGTQTQEKRHTTTKNT 49
Query: 60 LTSYSAL--NTLIRQSADPNAINNA 82
+Y+ L +T+++++A N NA
Sbjct: 50 YATYNYLPTDTILKRAA--NLFTNA 72
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 48.1 bits (113), Expect = 7e-07
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 34/154 (22%)
Query: 495 GIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMN----------GIGFQ 544
G Q NY +++++++Q + S + ++ + +S TN+ N G+ +
Sbjct: 448 GSQTNYNLNASLNTQDLANSM---LSTIQKT-FVTSSVTNHHFSNASQSFRSPILGVNAK 503
Query: 545 VGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFINDKATKH 604
+GY+ +F N G YYG + YN+ ++ N +YG G DLL++FI + K+
Sbjct: 504 IGYQNYF--NDFIGLAYYGIIKYNY----AKAVNQKVQQLSYGGGIDLLLDFITTYSNKN 557
Query: 605 N----------KISFGAFGGIQLAGTSWLNSQYV 628
+ SFG FGG++ NS YV
Sbjct: 558 SPTGIQTKRNFSSSFGIFGGLR----GLYNSYYV 587
Score = 32.7 bits (73), Expect = 0.033
Identities = 28/85 (32%), Positives = 43/85 (49%), Gaps = 16/85 (18%)
Query: 1 MKKKFLSLTLGSLLVSALSA-EDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNL 59
M+K F+ L LL SAL A E NGFF+ AG++ G +G Q + N
Sbjct: 1 MRKLFIPL----LLFSALEANEKNGFFIEAGFETG-------LLEGTQTQEKRHTTTKNT 49
Query: 60 LTSYSAL--NTLIRQSADPNAINNA 82
+Y+ L +T+++++A N NA
Sbjct: 50 YATYNYLPTDTILKRAA--NLFTNA 72
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 47.4 bits (111), Expect = 1e-06
Identities = 46/176 (26%), Positives = 87/176 (49%), Gaps = 26/176 (14%)
Query: 538 MNGIGFQVGYKQFFGKNKRWGARYYGFVDY-NHTYNKSQFFNSDSDVWTYGVGSDLLVNF 596
+ G F +G+ + N + +RYY F+DY N NK + ++++TYG G DL++ +
Sbjct: 56 IEGASFSLGW-EINPTNYWFYSRYYFFMDYGNVILNKRT--GAQANMFTYGFGGDLIMEY 112
Query: 597 INDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAK---INTSNFQFLFNLG 653
K+ F F G+Q+A +W S++ ++++ + + TSNF+ L +G
Sbjct: 113 -----NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTSNFRMLGLVG 167
Query: 654 LRTNLARNKRIGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVF 709
+ + + H A +E+G+K P Y S + RL+SV++++ F
Sbjct: 168 FKF-----QTVLFHHDA--SIEVGIKWP-FAFEYDS------PFVRLFSVFISHTF 209
>ref|NP_223078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 200
Score = 45.4 bits (106), Expect = 5e-06
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 535 NGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDS----DVWTYGVGS 590
N + G GY + KN +RYY F+DY + FN+DS +++TYGVG
Sbjct: 42 NKLLQGASILQGY-EVNPKNDWAYSRYYFFIDYGNV-----LFNNDSTLQANMFTYGVGG 95
Query: 591 DLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAK 640
D +V + + + + F G+QLA +W+ + V VN + K
Sbjct: 96 DFMVAYAKNPINR-----WAFFFGLQLAANTWILNNKVKDLVVNTWDSLK 140
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 42.7 bits (99), Expect = 3e-05
Identities = 30/97 (30%), Positives = 42/97 (42%), Gaps = 18/97 (18%)
Query: 540 GIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVNFIND 599
G+ ++GY+ +F N G YYG + YN+ + S YG G D+L +FI
Sbjct: 595 GVNVKIGYQHYF--NDYIGLAYYGIIQYNYAQANDEKIQQLS----YGGGMDVLFDFITT 648
Query: 600 KATKHN--------KISFGAFGGIQLAGTSWLNSQYV 628
K SFG FGG++ NS YV
Sbjct: 649 YTNKKQDHPTKKVFASSFGVFGGLR----GLYNSYYV 681
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 34.3 bits (77), Expect = 0.011
Identities = 46/179 (25%), Positives = 71/179 (38%), Gaps = 33/179 (18%)
Query: 539 NGIGFQVGYKQFFGKNK---RWGARYYGFVDYNHTYNKSQFFNSDSDVWTYGVGSDLLVN 595
NG G +G K F K + G RY F D + +KS + TYG+ L +
Sbjct: 69 NGFGVVLGGK-FVAKTQAVEHVGFRYGLFYDQTFSSHKSY-------ISTYGLEFSGLWD 120
Query: 596 FINDKATKHNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLR 655
N K+ G G+ +AG +++ ++ + Y K N S FQ L +G R
Sbjct: 121 AFNSP-----KMFLGLEFGLGIAGATYMPGGAMH--GIIAQYLGKEN-SLFQLLVKVGFR 172
Query: 656 TNLARNKRIGADHSAQHGMELGVKIPTI---NTNYYSLLGTTLQYRRLYSVYLNYVFAY 711
N+ + G+K P I T L T ++RL Y NY++ +
Sbjct: 173 FGFFHNE-----------ITFGLKFPVIPNKKTEIVDGLSATTLWQRLPVAYFNYIYNF 220
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 29.6 bits (65), Expect = 0.28
Identities = 22/82 (26%), Positives = 37/82 (44%), Gaps = 20/82 (24%)
Query: 604 HNKISFGAFGGIQLAGTSWLNSQYVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKR 663
+ K SFG +GG+ + + S ++ + N + + LFN+GL + + R+ R
Sbjct: 105 YKKYSFGVYGGLGIG--YFYQSNHLGMKNSS--------FMGYNGLFNVGLGSTIDRHHR 154
Query: 664 IGADHSAQHGMELGVKIPTINT 685
+ ELG KIP T
Sbjct: 155 V----------ELGAKIPFSKT 166
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 29.6 bits (65), Expect = 0.28
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 18 LSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTSYSALNTLIRQSADPN 77
L E+NG +S YQ A M +K + ++ +++ + N+ +Y+ L D +
Sbjct: 454 LMPENNGIKISVWYQTNSYATMSLRSKIVAEIVEAFLKEENIHIAYTTSKLL---KVDAD 510
Query: 78 AINNARGN 85
A+ + GN
Sbjct: 511 ALGDGFGN 518
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 28.1 bits (61), Expect = 0.80
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 136 NGGVQTFENVPSNGGTTIACDSFYEPG 162
NGG F+NV SNG TTI+ +F G
Sbjct: 239 NGGNFGFDNVDSNGATTISGVTFNNNG 265
Score = 26.6 bits (57), Expect = 2.3
Identities = 15/38 (39%), Positives = 24/38 (62%), Gaps = 4/38 (10%)
Query: 576 FFNSDSDVWTYG-VGSDLLVNFINDKATK---HNKISF 609
+FN++S + G VG DLLVN + DK + +N +S+
Sbjct: 3104 YFNTNSYFYAIGGVGRDLLVNSMGDKLVRFIGNNTLSY 3141
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 26.2 bits (56), Expect = 3.0
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 77 NAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSYSISVCGPGSDKNKN 136
N N + N NA + D V + +++ G V Y + GS N
Sbjct: 217 NGANGSHSNNNAIGSGI--DTDGVLGVDGVNGSSSSSGG--SVGGYENNFTNHGSTNNNT 272
Query: 137 GGVQTFENVPSNGGT 151
GG F N S+GG+
Sbjct: 273 GGYDNFNNGSSSGGS 287
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 25.8 bits (55), Expect = 4.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 77 NAINNARGNLNASAKNLINDKKNSP 101
N I+ LN+ AKN + D KN+P
Sbjct: 6 NPIHTNANALNSGAKNEVKDAKNAP 30
>ref|NP_223537.1| vacuolating cytotoxin [Helicobacter pylori J99]
Length = 1288
Score = 25.8 bits (55), Expect = 4.0
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 284 GNSLWAGIDKGDGSACGIFKN--EISAIQDMIKNAEIAVEQSKIV 326
GN+ + SA G +K +I++ QD+IKN E + ++KI+
Sbjct: 691 GNAAAMMFNNDIDSATGFYKPLIKINSAQDLIKNTEHVLLKAKII 735
>ref|NP_222768.1| putative TYPE II restriction enzyme [Helicobacter pylori J99]
Length = 260
Score = 25.8 bits (55), Expect = 4.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 364 ILNRAQAVVKDFERIPAAFVKDSLGVCHEKGSD 396
I N A++K + + A F K L H KG D
Sbjct: 142 IANENDAILKASDNVMAEFAKSHLNYHHHKGLD 174
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 25.4 bits (54), Expect = 5.2
Identities = 12/43 (27%), Positives = 17/43 (38%)
Query: 324 KIVTANAQNQHNLDTGKAFNPYKDANFAQSMFANARAQAEILN 366
KI A + +N+ T NP + Q N E+LN
Sbjct: 1101 KIQNATYSDNNNIQTWSFINPLNSSQIIQESIKNGDLTIEVLN 1143
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 24.6 bits (52), Expect = 8.9
Identities = 17/64 (26%), Positives = 31/64 (47%), Gaps = 4/64 (6%)
Query: 3 KKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYER---LNNL 59
K+F L +L AL + + + + G+ IG+ + VKN L+ +Y + + NL
Sbjct: 17 KRFAPLVEKGVLKEALQSNKDRYLLKEGFDIGK-IERVKNKAFFISLAKNYPKDPLIKNL 75
Query: 60 LTSY 63
S+
Sbjct: 76 PPSF 79
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 750,784
Number of Sequences: 1491
Number of extensions: 35138
Number of successful extensions: 295
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 84
length of query: 711
length of database: 494,079
effective HSP length: 84
effective length of query: 627
effective length of database: 368,835
effective search space: 231259545
effective search space used: 231259545
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)