BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644884|ref|NP_207054.1| hypothetical protein
[Helicobacter pylori 26695]
(142 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222961.1| putative [Helicobacter pylori J99] 260 9e-72
ref|NP_223405.1| putative [Helicobacter pylori J99] 38 1e-04
ref|NP_222772.1| putative [Helicobacter pylori J99] 34 0.001
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 34 0.002
ref|NP_223788.1| putative [Helicobacter pylori J99] 32 0.005
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 32 0.009
ref|NP_223610.1| putative [Helicobacter pylori J99] 31 0.012
ref|NP_222831.1| putative [Helicobacter pylori J99] 31 0.015
ref|NP_223475.1| putative osmoprotection binding protein [H... 30 0.026
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.034
ref|NP_223965.1| putative [Helicobacter pylori J99] 29 0.044
ref|NP_224153.1| putative [Helicobacter pylori J99] 29 0.058
ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 29 0.058
ref|NP_223520.1| putative [Helicobacter pylori J99] 28 0.076
ref|NP_222962.1| putative [Helicobacter pylori J99] 28 0.076
ref|NP_223731.1| putative [Helicobacter pylori J99] 28 0.099
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 28 0.13
ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99] 28 0.13
ref|NP_223415.1| putative [Helicobacter pylori J99] 27 0.17
ref|NP_224174.1| putative [Helicobacter pylori J99] 27 0.22
ref|NP_223830.1| putative [Helicobacter pylori J99] 27 0.22
ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter ... 27 0.29
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 27 0.29
ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicoba... 27 0.29
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 26 0.38
ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pyl... 26 0.49
ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylo... 26 0.49
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 25 0.64
ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helico... 25 0.64
ref|NP_223590.1| putative [Helicobacter pylori J99] 25 0.84
ref|NP_223386.1| putative [Helicobacter pylori J99] 25 0.84
ref|NP_223093.1| putative [Helicobacter pylori J99] 25 0.84
ref|NP_223761.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223252.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223238.1| putative [Helicobacter pylori J99] 25 1.1
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 24 1.4
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 24 1.4
ref|NP_223176.1| putative [Helicobacter pylori J99] 24 1.4
ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicob... 24 1.9
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 24 1.9
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 24 1.9
ref|NP_223084.1| putative [Helicobacter pylori J99] 24 1.9
ref|NP_223915.1| putative [Helicobacter pylori J99] 23 2.4
ref|NP_224022.1| putative [Helicobacter pylori J99] 23 3.2
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 23 3.2
ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobact... 23 3.2
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 23 3.2
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 23 3.2
ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Heli... 23 3.2
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 4.2
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 23 4.2
ref|NP_223527.1| catalase [Helicobacter pylori J99] 23 4.2
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 23 4.2
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 22 5.4
ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter p... 22 5.4
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 22 5.4
ref|NP_222877.1| putative [Helicobacter pylori J99] 22 5.4
ref|NP_223692.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_223639.1| putative [Helicobacter pylori J99] 22 7.1
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 22 7.1
ref|NP_222740.1| putative carboxynorspermidine decarboxylas... 22 7.1
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 22 9.3
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 22 9.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_222979.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_222961.1| putative [Helicobacter pylori J99]
Length = 142
Score = 260 bits (665), Expect = 9e-72
Identities = 136/142 (95%), Positives = 139/142 (97%)
Query: 1 MKKFASVLVQLKTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQ 60
MKKFASVLVQLKTLALEKIE+KLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQ
Sbjct: 1 MKKFASVLVQLKTLALEKIERKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQ 60
Query: 61 TQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEK 120
TQQLKSALRMEIEYYQQE ENL KDLKILEKDYLLANQELEKAKIILEKEKQKE++ILEK
Sbjct: 61 TQQLKSALRMEIEYYQQEGENLTKDLKILEKDYLLANQELEKAKIILEKEKQKEKEILEK 120
Query: 121 KEQALLDENAMILHWQKEGLHA 142
KEQALLDENAMILHWQK GLHA
Sbjct: 121 KEQALLDENAMILHWQKGGLHA 142
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 38.1 bits (87), Expect = 1e-04
Identities = 35/121 (28%), Positives = 57/121 (46%), Gaps = 14/121 (11%)
Query: 14 LALEKIEQKLESKRLELQQNER-------EVLDKQAQLSAFKNPELGGMSLF--LQTQQL 64
+A E + Q SK +L Q E+ EV ++S+ + + S LQT+Q
Sbjct: 140 VAFENLHQSTLSKMSQLSQEEKKLNVQALEVKSSIQKISSVIDEQKTRESTLKSLQTEQN 199
Query: 65 KSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQA 124
K L M+ +Y N+ L +LEK+ N L++ II + + +E+ L+K QA
Sbjct: 200 KLILSMQKDY-----AIYNQRLSLLEKERQNLNALLKRLNIIKQNRENEERVSLKKSSQA 254
Query: 125 L 125
L
Sbjct: 255 L 255
Score = 22.3 bits (46), Expect = 5.4
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 77 QESENLNKDLKILE---KDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMIL 133
+E LN L L + L E+E+ + L+K +K + +E+ L + +
Sbjct: 39 EEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNRNESLVQEKVLTNYRKSLD 98
Query: 134 HWQKE 138
H QK+
Sbjct: 99 HLQKQ 103
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 34.3 bits (77), Expect = 0.001
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 21/136 (15%)
Query: 12 KTLALEKIEQKLESKRLELQQNE--REVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALR 69
K L EK + E+K L + +E + Q Q++ KN K L
Sbjct: 40 KALTTEKERLERENKNLTADKENLTKEKTELQKQVNELKNS--------------KQVLE 85
Query: 70 MEIEYYQQESENLNKDLKILEKDYLLANQE-----LEKAKIILEKEKQKEQKILEKKEQA 124
E + +E ENL KD + L K+ ++ EK ++ EKE ++K +K+
Sbjct: 86 NEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATEKENLTKEKTESQKQVN 145
Query: 125 LLDENAMILHWQKEGL 140
L + +L +K L
Sbjct: 146 ELKNSKQVLENEKADL 161
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 33.9 bits (76), Expect = 0.002
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 17/133 (12%)
Query: 11 LKTLALEKIEQKLESKRLELQQNEREVLD--KQAQLSAFKNPELGGMSLF----LQTQQL 64
LK + +I +K K LELQ+ +E D K A+ A KN L G+S L+ Q L
Sbjct: 415 LKLINDPEIREKFR-KELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQAL 473
Query: 65 KSALRMEIEYYQQES-ENLNKDLKILEKDYLLANQELEKAKIIL-----EKEKQKEQKIL 118
+ + ++E +N+ +DL+ LLA+ ++ K + EKEKQ+ +K+L
Sbjct: 474 DCLKNAKTDEERKECLKNIPQDLQ----KELLADMSVKAYKDCVSRARNEKEKQECEKLL 529
Query: 119 EKKEQALLDENAM 131
+ + LL+ A+
Sbjct: 530 TPEAKKLLENQAL 542
Score = 26.2 bits (56), Expect = 0.38
Identities = 19/53 (35%), Positives = 33/53 (61%), Gaps = 3/53 (5%)
Query: 80 ENLNKDLK--ILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENA 130
+NL KDL+ IL K+ L A ++ ++ E EK++ +K+L + + LL+E A
Sbjct: 559 KNLPKDLQSDILAKESLKAYKDCA-SQAKTEAEKKECEKLLTPEAKKLLEEEA 610
Score = 25.8 bits (55), Expect = 0.49
Identities = 31/132 (23%), Positives = 56/132 (41%), Gaps = 17/132 (12%)
Query: 9 VQLKTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSAL 68
+Q K LA E + L+ + ER+ +K A K L + ++ A
Sbjct: 970 LQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARK--------LLEEAKESVKAY 1021
Query: 69 RMEIEYYQQESENLNKDLKILEKDYLLANQELEKA-KIIL--------EKEKQKEQKILE 119
+ + + E E + + + L QE++K+ K L EKEKQ+ +K+L
Sbjct: 1022 KDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT 1081
Query: 120 KKEQALLDENAM 131
+ + LL+ A+
Sbjct: 1082 PEARKLLENQAL 1093
Score = 23.5 bits (49), Expect = 2.4
Identities = 10/22 (45%), Positives = 17/22 (76%)
Query: 108 EKEKQKEQKILEKKEQALLDEN 129
EKEKQ+ +K+L + + LL+E+
Sbjct: 772 EKEKQECEKLLTPEARKLLEES 793
Score = 23.5 bits (49), Expect = 2.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 108 EKEKQKEQKILEKKEQALLDENAM 131
EKEKQ+ +K+L + + LL+ A+
Sbjct: 924 EKEKQECEKLLTPEAKKLLENQAL 947
Score = 23.5 bits (49), Expect = 2.4
Identities = 17/52 (32%), Positives = 33/52 (62%), Gaps = 3/52 (5%)
Query: 80 ENLNKDL--KILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDEN 129
++L KDL K+L K+ + A + ++ EKEK++ +K+L + + LL+E+
Sbjct: 1110 KDLPKDLQKKVLAKESVKAYLDCV-SRARNEKEKKECEKLLTPEARKLLEES 1160
Score = 23.5 bits (49), Expect = 2.4
Identities = 10/22 (45%), Positives = 17/22 (76%)
Query: 108 EKEKQKEQKILEKKEQALLDEN 129
EKEKQ+ +K+L + + LL+E+
Sbjct: 848 EKEKQECEKLLTPEARKLLEES 869
Score = 23.1 bits (48), Expect = 3.2
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 10/125 (8%)
Query: 9 VQLKTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSAL 68
+Q K LA E ++ L+ + E++ +K A K E S+ + A
Sbjct: 1116 LQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKA- 1174
Query: 69 RMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIIL-----EKEKQKEQKILEKKEQ 123
+ E E + E + K+LE+ A + ++ K + EKEKQ+ +K+L + +
Sbjct: 1175 KNEAEKKECEKLLTPEARKLLEE----AKESVKAYKDCVSRARNEKEKQECEKLLTPEAR 1230
Query: 124 ALLDE 128
LL++
Sbjct: 1231 KLLEQ 1235
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 32.3 bits (72), Expect = 0.005
Identities = 34/134 (25%), Positives = 67/134 (49%), Gaps = 12/134 (8%)
Query: 17 EKIEQKLES--KRLELQQNEREVLDKQAQLSAFKNP-----ELGGMSLFLQTQQLKSALR 69
+ +EQK E+ +R + QQ + + KQA A ++ E + FL+ Q+ L+
Sbjct: 59 KNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERAKIIEEARKNAFLEQQKGLELLQ 118
Query: 70 MEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKI---LEKKEQALL 126
E++ ++ + L++ K E + L ++++ E EK+ +K+ EK E+AL
Sbjct: 119 KELDEKSKQVQELHQ--KEAEIERLKRENNEAESRLKAENEKKLNEKLELEREKIEKALH 176
Query: 127 DENAMILHWQKEGL 140
++N + Q+E L
Sbjct: 177 EKNELKFKQQEEQL 190
Score = 30.0 bits (66), Expect = 0.026
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 32 QNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEK 91
Q+ER + ++A+ +AF + G + L + KS E+ + E E L ++ E
Sbjct: 92 QDERAKIIEEARKNAFLEQQKG-LELLQKELDEKSKQVQELHQKEAEIERLKRENNEAES 150
Query: 92 DYLLANQELEKAKIILEKEK-------QKEQKILEKKEQALLDENAM 131
N++ K+ LE+EK + E K +++EQ + N +
Sbjct: 151 RLKAENEKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNEL 197
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 31.6 bits (70), Expect = 0.009
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 17 EKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQ 76
+ ++Q+ + E N + L+K A + N + TQ + + + +
Sbjct: 440 DDLQQQAQQTYQEDVANSQNALNKVASDNTIANNDTS------YTQSSNPTILKDAQGLE 493
Query: 77 QESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALL-DENAMILHW 135
++ + +D K LEKD Q E+ + QK ++ EQAL DENA +
Sbjct: 494 NTNQQIQQDEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQALQNDENA--FNT 551
Query: 136 QKEGL 140
++EGL
Sbjct: 552 EQEGL 556
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 31.2 bits (69), Expect = 0.012
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 70 MEIEYYQQESENLNKDLKILEKDYLLANQELE---KAKIILEKEKQKEQKILEKKEQALL 126
+EI + +E ++L ++ KD A + E KA + LE+EK + + K EQ L
Sbjct: 9 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 68
Query: 127 DENAMILHWQKE 138
D NA I QK+
Sbjct: 69 DTNAKIASIQKK 80
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 30.8 bits (68), Expect = 0.015
Identities = 30/116 (25%), Positives = 53/116 (44%), Gaps = 17/116 (14%)
Query: 26 KRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLNKD 85
K++EL+Q ++E +L + Q+ + + EIE +QE + NK
Sbjct: 125 KQIELEQEKKEANKSGIKLEQERQKT---------EQERQKTNKSEIEL-EQERQKTNKS 174
Query: 86 LKILEKDYLLANQELEKAKIILEKEKQKEQKI---LEKKEQALLDENAMILHWQKE 138
L + A QE +K E+EKQK K LE+++Q ++ ++ QK+
Sbjct: 175 GIELANSQIKAEQERQKT----EQEKQKANKSEIELEQQKQKTINTQRDLIKEQKD 226
Score = 28.9 bits (63), Expect = 0.058
Identities = 24/94 (25%), Positives = 48/94 (50%), Gaps = 9/94 (9%)
Query: 14 LALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKS------A 67
+ LE+ QK E +R + ++E E L+++ Q + EL + + ++ K+ A
Sbjct: 141 IKLEQERQKTEQERQKTNKSEIE-LEQERQKTNKSGIELANSQIKAEQERQKTEQEKQKA 199
Query: 68 LRMEIEYYQQESE--NLNKDLKILEKDYLLANQE 99
+ EIE QQ+ + N +DL +KD++ ++
Sbjct: 200 NKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQ 233
>ref|NP_223475.1| putative osmoprotection binding protein [Helicobacter pylori J99]
Length = 553
Score = 30.0 bits (66), Expect = 0.026
Identities = 25/91 (27%), Positives = 45/91 (48%), Gaps = 8/91 (8%)
Query: 55 MSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEKDY-LLANQELEKAKIILEKEKQK 113
M + L+ + +S ++ + +++ DLK+L+ D N + A I++ KE K
Sbjct: 449 MDINLRYKSFESHKINALDVFTTDAQIKELDLKVLKDDKGFFPNYQ---AGIVIRKETIK 505
Query: 114 EQ----KILEKKEQALLDENAMILHWQKEGL 140
+ KILEK + + DE L++Q E L
Sbjct: 506 KYPEVLKILEKLDSKISDEKMQDLNYQVEAL 536
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 29.6 bits (65), Expect = 0.034
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 19 IEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQE 78
+ QKL + L N E+ D L FK+ + L Q Q L +A R+ + Y++
Sbjct: 15 VAQKLAEEEL----NANEINDPLEMLD-FKSFDDNKELLDYQQQALINAFRVLVAYFRDF 69
Query: 79 SENLNKDLKILEKDYLLANQELEKAKI 105
E+ + +K Y AN + K K+
Sbjct: 70 KESKKEFYAFYQKHYSFANCDFAKKKL 96
>ref|NP_223965.1| putative [Helicobacter pylori J99]
Length = 412
Score = 29.3 bits (64), Expect = 0.044
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 12 KTLALEKIEQKLESKRLELQ--QNEREVLDKQAQL-SAFKNPELGGMSLFLQTQQLKSAL 68
K L ++ K SK ++Q Q + + LD Q ++ S + NP L L +
Sbjct: 31 KDLEIQTFVAKYLSKNQKIQALQEQIDALDSQEKVVSKWDNPIL---YLGYNNANVSDFF 87
Query: 69 RMEIEYYQQESENLNKDLKILEKDYLLANQ-ELEKAKIILEKEKQKEQKIL 118
R++ Q S L++ + + K + LEK K ILE +K K+Q ++
Sbjct: 88 RLDSTLMQNMSLGLSQKVDLNGKKLTQSKMINLEKQKKILELKKTKQQLVI 138
Score = 21.6 bits (44), Expect = 9.3
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 52 LGGMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEK 111
L G L Q+ K +L + E +++ + LK+L+K L KII + EK
Sbjct: 300 LYGKQAKLVEQKKKESLAFKSEVENAKNKTRHLALKLLKKLETLQKNLESINKIIKQNEK 359
Query: 112 QKEQKILEKK 121
+ L+ K
Sbjct: 360 IAQIYALDLK 369
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 28.9 bits (63), Expect = 0.058
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 67 ALRMEIEYYQQESENLNKDLKILEKDYL-LANQELEKAKIILEKEKQKEQKILEKKEQAL 125
AL I +Q+E + L ILEKD+L ++ELE K + K +++ L++K + L
Sbjct: 147 ALPPNIYEHQEEDLDFKGLLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLKEKLEKL 206
Query: 126 LDENAMIL 133
D + L
Sbjct: 207 EDPKTLQL 214
>ref|NP_223502.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 875
Score = 28.9 bits (63), Expect = 0.058
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 12 KTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKN---PELGGMSLFLQTQQLKSAL 68
K L LE I E+ + N R+ D Q++ F + PE G +++ L
Sbjct: 646 KILKLENILNSFENFNKDDHINPRDFQDYQSKYLDFYDEMRPEKGR-----DKEEINDDL 700
Query: 69 RMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKE 122
EIE +Q N++ L ++EK + E++ K +E ++ KK+
Sbjct: 701 IFEIELIKQVEVNIDYILTLIEKYAKEPDLEIQGVKTQIEPILNSSIELRNKKD 754
>ref|NP_223520.1| putative [Helicobacter pylori J99]
Length = 153
Score = 28.5 bits (62), Expect = 0.076
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 71 EIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKE-QKILEKK 121
E+ YQQE E+ + LK + + + L K K +L+ KQ+ QK LEK+
Sbjct: 4 ELNAYQQEIEDTREVLKKIRLELKQVQEILRKKKSVLKGLKQEICQKKLEKE 55
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 28.5 bits (62), Expect = 0.076
Identities = 30/132 (22%), Positives = 61/132 (45%), Gaps = 27/132 (20%)
Query: 1 MKKFASVLVQLKTLALEKIEQKL-------ESKRLELQQNEREVLDKQAQLSAFKNPELG 53
M+K + + L+ L E+ Q+L ESK+ EL+++ R++ +K+ L
Sbjct: 1 MRKILLMGLILQALFGEEAAQELLQCSAIFESKKAELKEDLRQLSEKEQSLR-------- 52
Query: 54 GMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQK 113
LQT+ + ++S+ LNK K +++ + E K + +EK++
Sbjct: 53 ----ILQTENAR--------LLDEKSDLLNKKEKEIDEKLKNLAAKEEAFKTLQTEEKKR 100
Query: 114 EQKILEKKEQAL 125
+ ++E+ E L
Sbjct: 101 LKNLIEENEGIL 112
Score = 21.9 bits (45), Expect = 7.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 110 EKQKEQKILEKKEQALLDENAMILH 134
EK++ +IL+ + LLDE + +L+
Sbjct: 46 EKEQSLRILQTENARLLDEKSDLLN 70
>ref|NP_223731.1| putative [Helicobacter pylori J99]
Length = 201
Score = 28.1 bits (61), Expect = 0.099
Identities = 22/77 (28%), Positives = 35/77 (44%), Gaps = 4/77 (5%)
Query: 62 QQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKK 121
++ KS L I+ + Q +N LK+ + + LEK LE EK+ Q L +
Sbjct: 96 ERFKSRLDKAIDSFNQNLDNGAASLKLPSDIDIDDTKALEKFSKSLESEKESIQNSLHQW 155
Query: 122 EQALLDENAMILHWQKE 138
++ L + N H KE
Sbjct: 156 KKQLAETN----HLNKE 168
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 27.7 bits (60), Expect = 0.13
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 76 QQESENLNKDL--KILEKDYLLANQELEKAKIILEKEKQKEQ 115
Q EN + L +++ L+AN+E + K++ EKEKQ+ +
Sbjct: 275 QTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETE 316
Score = 23.9 bits (50), Expect = 1.9
Identities = 14/49 (28%), Positives = 29/49 (58%), Gaps = 8/49 (16%)
Query: 75 YQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQ 123
Y ++ N K++E+ L+AN +L + E+++E+K+L +KE+
Sbjct: 272 YATQTAPENSKEKLIEE--LIANSQL------IANEEEREKKLLAEKEK 312
>ref|NP_223024.1| GUANYLATE KINASE [Helicobacter pylori J99]
Length = 206
Score = 27.7 bits (60), Expect = 0.13
Identities = 13/28 (46%), Positives = 21/28 (74%), Gaps = 1/28 (3%)
Query: 81 NLNKDLKILEK-DYLLANQELEKAKIIL 107
N K+++ LE DYL+ N++LEK+K I+
Sbjct: 151 NAYKEMQCLESFDYLIINEDLEKSKEII 178
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 27.3 bits (59), Expect = 0.17
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 59 LQTQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQE-LEKAKIILEKEKQKEQKI 117
LQ Q L+++ + ++E+ K L+ K+++ + LEK K KE +KE++I
Sbjct: 71 LQQQYENKNLQLQTHFDKKEAHL--KHLEAQHKEFVRDEKRYLEKEK----KELEKERQI 124
Query: 118 LEKKEQALLDENAMILHWQKEGLHA 142
LE++ + + A+ Q + L A
Sbjct: 125 LEQERENFKKQRAICKEAQAKALDA 149
>ref|NP_224174.1| putative [Helicobacter pylori J99]
Length = 312
Score = 26.9 bits (58), Expect = 0.22
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 82 LNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILE 119
LNK++K +EK + L +E EK + EK + + L+
Sbjct: 51 LNKEIKNIEKQHALITKEFEKKRETNEKLSLQMDEFLD 88
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 26.9 bits (58), Expect = 0.22
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 69 RMEIEYYQQESENL----NKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQ 123
+ E+ Q+E+EN NK LE++ QE +K + +K +Q++QK ++K++
Sbjct: 100 KKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQK 158
Score = 25.4 bits (54), Expect = 0.64
Identities = 16/58 (27%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Query: 66 SALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQ 123
+A+ M + + +S+ K++ +K+ A K+ I LE+E+QK ++ +K EQ
Sbjct: 86 TAMLMNVCFADDQSK---KEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQ 140
Score = 23.1 bits (48), Expect = 3.2
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 76 QQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMI 132
+QE + ++ + E++ QE +K E+EKQK ++ EK++ + ++ N I
Sbjct: 125 EQEEQKTEQEKQKTEQEKQKTEQEKQKT----EQEKQKTEQ--EKQKTSNIETNNQI 175
Score = 23.1 bits (48), Expect = 3.2
Identities = 14/68 (20%), Positives = 32/68 (46%)
Query: 60 QTQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILE 119
+T+Q K E + +QE + ++ + E++ + +I +E+E+QK ++ +
Sbjct: 130 KTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ 189
Query: 120 KKEQALLD 127
K D
Sbjct: 190 KTNNTQKD 197
>ref|NP_224172.1| FOLYLPOLYGLUTAMATE SYNTHASE [Helicobacter pylori J99]
Length = 389
Score = 26.6 bits (57), Expect = 0.29
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 26 KRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENL--- 82
+ L L ++ DK AQL +N G+S +++ L L M +E + E L
Sbjct: 193 QELVLNVAQKIAKDKHAQLIVVQNEISKGVSDYIERHHLAHFLAMNLEVALKAFETLLPC 252
Query: 83 NKD--LKILEKDYLLANQELEKAKIILE 108
NK LK L+ L+ EL I+++
Sbjct: 253 NKQEVLKNLKPLDLIGRCELLSPNILID 280
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 26.6 bits (57), Expect = 0.29
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 72 IEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDE 128
IE+Y+ + + L D L++Q+ +K L ++K EQKI E+K Q LD+
Sbjct: 264 IEFYKPDQKPL---------DQKLSDQKPQK----LSEQKALEQKISEQKPQEPLDQ 307
>ref|NP_222851.1| A/G-SPECIFIC ADENINE GLYCOSYLASE [Helicobacter pylori J99]
Length = 328
Score = 26.6 bits (57), Expect = 0.29
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 2 KKFASVLVQLKTLALEKIEQKL 23
+++ V++Q +ALEKIEQKL
Sbjct: 226 ERYLGVVIQNNQIALEKIEQKL 247
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 26.2 bits (56), Expect = 0.38
Identities = 18/70 (25%), Positives = 38/70 (53%), Gaps = 7/70 (10%)
Query: 19 IEQKLESKRLELQQ------NEREVLDKQAQ-LSAFKNPELGGMSLFLQTQQLKSALRME 71
+++ L+S ++L+ N +EVL+ A+ ++ F+ P + +L + S++ E
Sbjct: 166 LQETLKSLEIQLKNYAPKLLNSKEVLNFYAEYINGFELPLKPLVGGYLSDSYIASSITFE 225
Query: 72 IEYYQQESEN 81
+Y+ QES N
Sbjct: 226 KDYFIQESFN 235
>ref|NP_223699.1| 30S RIBOSOMAL PROTEIN S1 [Helicobacter pylori J99]
Length = 552
Score = 25.8 bits (55), Expect = 0.49
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 83 NKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQ 123
N+DL L+KD + QE+ + +EK K + + + E+
Sbjct: 485 NEDLNPLKKDEIKIGQEITCVVVAIEKSNNKVRASVHRLER 525
>ref|NP_223447.1| POLYPEPTIDE DEFORMYLASE [Helicobacter pylori J99]
Length = 174
Score = 25.8 bits (55), Expect = 0.49
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 15/68 (22%)
Query: 71 EIEYYQQ---ESENLNKDLKILEKDYLLA---NQELE---------KAKIILEKEKQKEQ 115
E+E +++ E +N ++KILE LLA E++ K I+ K+ +KE
Sbjct: 105 EVERFEKVKIEYQNRFAEVKILEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFEKEL 164
Query: 116 KILEKKEQ 123
K L+KK++
Sbjct: 165 KELQKKQK 172
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 25.4 bits (54), Expect = 0.64
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 76 QQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMI 132
+++ E LNK K LEK +L EL +L++ K K L ++ +A + N +I
Sbjct: 277 KRQVETLNKQDKCLEKLFLGLRCELGVELSLLDENK---VKFLIEENKAFIKNNRLI 330
>ref|NP_222964.1| EXODEOXYRIBONUCLEASE LARGE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 25.4 bits (54), Expect = 0.64
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 15/66 (22%)
Query: 11 LKTLALEKIEQKLESKRLELQQNEREVLDK-QAQLSAFKNPELGGMSLFLQTQ-----QL 64
L L LEK+ L++K LE + ++ +L+K QLS S FLQT+ +L
Sbjct: 313 LNALKLEKLTIALDNKTLEFLRLKKTLLEKISTQLST---------SPFLQTKTERLNRL 363
Query: 65 KSALRM 70
++AL++
Sbjct: 364 ENALKL 369
>ref|NP_223590.1| putative [Helicobacter pylori J99]
Length = 274
Score = 25.0 bits (53), Expect = 0.84
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 75 YQQESENLNKD----------LKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQA 124
+++E++ L+KD L++LE A ++ + + E+ K +Q I E K++
Sbjct: 179 FKKENKKLDKDFYECGNHLYNLQLLEGTENQAKKDKDPEVWLKEEYKDNQQAIEEYKKRN 238
Query: 125 LLDENAMILHWQ 136
+D N + L W+
Sbjct: 239 YIDPN-LRLEWE 249
>ref|NP_223386.1| putative [Helicobacter pylori J99]
Length = 569
Score = 25.0 bits (53), Expect = 0.84
Identities = 18/68 (26%), Positives = 34/68 (49%)
Query: 73 EYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMI 132
E ++ + L + L +L + + ++ E+A I E++ K KI ++ Q LDE +
Sbjct: 154 ESHKDDLNWLFRTLNLLSRTIFVISRFDEEADIEDEEDYNKRFKIKKENIQNRLDELISL 213
Query: 133 LHWQKEGL 140
+KE L
Sbjct: 214 SEEEKESL 221
Score = 23.5 bits (49), Expect = 2.4
Identities = 12/41 (29%), Positives = 23/41 (55%)
Query: 69 RMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEK 109
+ ++ +E E LNK L+ K+ N+E+ +A+I L +
Sbjct: 292 KQALQDINREMEYLNKTLEKRRKEIQDLNKEISQARIHLRE 332
>ref|NP_223093.1| putative [Helicobacter pylori J99]
Length = 165
Score = 25.0 bits (53), Expect = 0.84
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 74 YYQQESENLN--KDLKILEKDYLLANQELEKAK 104
+ +E E+L KDLKIL KD++L + LEK K
Sbjct: 120 FVSKERESLTDFKDLKILPKDFMLPS-FLEKDK 151
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 24.6 bits (52), Expect = 1.1
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 6/58 (10%)
Query: 77 QESENLNKDLKILEKDYLLANQELEKAKII--LEKEK-QKEQKILEKKEQALLDENAM 131
+++ENLN+ K L+ EL A+ + LE E+ Q EQ+ L+ KEQ L + A+
Sbjct: 291 KDTENLNETTP---KPTHLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKRKEAL 345
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 24.6 bits (52), Expect = 1.1
Identities = 25/91 (27%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 21 QKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESE 80
Q K L QN +++ L F+NP LG ++T + + EY E
Sbjct: 810 QNTSLKNFALMQNMVNLINTIPSLIVFRNPHLGANGYQIKTGSVVFGITK--EYLGLEKI 867
Query: 81 NL-NKDLKILEKDYLLANQELEKAKIILEKE 110
+L K L I + EL+K K+ L E
Sbjct: 868 DLVGKTLDIAGNGII----ELDKNKLDLNLE 894
>ref|NP_223238.1| putative [Helicobacter pylori J99]
Length = 110
Score = 24.6 bits (52), Expect = 1.1
Identities = 23/84 (27%), Positives = 38/84 (44%), Gaps = 4/84 (4%)
Query: 35 REVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRM-EIEYYQQESENLNKDLKILEKDY 93
+ V +Q + +A L + +Q QL+ + I+ QE +L +LK L++
Sbjct: 26 KTVAKRQERTNASMKLTLQEAEILIQKHQLQLQRALGNIDILTQEMSSLKTELKALKQRN 85
Query: 94 LLANQELEKAKIILEKEKQKEQKI 117
E +K K + KQ EQKI
Sbjct: 86 SEYKGESDKYK---NRIKQLEQKI 106
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 24.3 bits (51), Expect = 1.4
Identities = 22/89 (24%), Positives = 42/89 (46%), Gaps = 15/89 (16%)
Query: 7 VLVQLKTLALEKIEQKLESKRLELQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKS 66
++ +L+ + L +E++L+ K +L N + L + Q+ K +L F
Sbjct: 184 IVDKLEKIGLNGVEEELK-KECDLDSNTIKDLLEMVQI---KQNDLSHAEFF-------- 231
Query: 67 ALRMEIEYYQQESENLNKDLKILEKDYLL 95
+I Y + +ENL K ++ LE+ Y L
Sbjct: 232 ---EKIAYLKDYNENLKKGIQDLERLYQL 257
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 24.3 bits (51), Expect = 1.4
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 16/85 (18%)
Query: 57 LFLQTQQLKSALRMEIEYYQQESEN---LNKDLK-ILEKDYLLAN----QELEKAKIILE 108
+F+Q + +KS L E +E+ N + +D + L+ L+ + +ELE+ K LE
Sbjct: 95 IFIQPKSVKSNLMFE-----KEAVNFALMTRDYQEFLKTKKLIVDAPDPKELEEQKKALE 149
Query: 109 KE---KQKEQKILEKKEQALLDENA 130
KE K++ QK + K + +E A
Sbjct: 150 KEKEAKEQAQKAQKDKREKRKEERA 174
Score = 23.5 bits (49), Expect = 2.4
Identities = 15/87 (17%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 42 AQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELE 101
AQ F + L + Q ++ S + E++ + E + ++++++ L +
Sbjct: 297 AQKDNFASAYLTVKLEYPQRHEVSSVIEEELK----KREEAKRQRELIKQENLNTTAYIN 352
Query: 102 KAKIILEKEKQKEQKILEKKEQALLDE 128
+ + ++ ++KI E+K++ +LD+
Sbjct: 353 RVMMASNEQIINKEKIREEKQKIILDQ 379
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 24.3 bits (51), Expect = 1.4
Identities = 18/65 (27%), Positives = 30/65 (45%), Gaps = 5/65 (7%)
Query: 64 LKSALRMEIEYYQQES-----ENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKIL 118
+K R E+ ++E EN + + K+ ANQ E A + EK QK ++
Sbjct: 237 VKKEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKF 296
Query: 119 EKKEQ 123
+ KE+
Sbjct: 297 DAKEE 301
Score = 22.7 bits (47), Expect = 4.2
Identities = 10/24 (41%), Positives = 18/24 (74%)
Query: 106 ILEKEKQKEQKILEKKEQALLDEN 129
+++KEK+KE +I +K+E+ EN
Sbjct: 236 LVKKEKRKEVRIEKKEERIDAREN 259
>ref|NP_224125.1| N-UTILIZATION SUBSTANCE PROTEIN A [Helicobacter pylori J99]
Length = 395
Score = 23.9 bits (50), Expect = 1.9
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 61 TQQLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKI-ILEKEKQK 113
T L A + +E + E L+ + K ++ + N L+KAK+ +L+ EK K
Sbjct: 288 TLALAPAKILSVEIKKIPIEELSAEEKESIQERFIVNNHLQKAKVRLLDIEKSK 341
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 23.9 bits (50), Expect = 1.9
Identities = 26/101 (25%), Positives = 47/101 (45%), Gaps = 10/101 (9%)
Query: 30 LQQNEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESEN--LNKDLK 87
L N +VL++ + P++ M + L++ L L + I ++ N N+ +
Sbjct: 64 LTHNMEDVLNRARKGEIKITPDI--MDVVLRSIDLMKTLLVTIRDTGSDTNNGKENEIEE 121
Query: 88 ILEKDYLLANQELEKAKIIL------EKEKQKEQKILEKKE 122
+++K + +Q LE AK EKE +KE K K+E
Sbjct: 122 VVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEE 162
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 23.9 bits (50), Expect = 1.9
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 17 EKIEQKLESKRLELQQNEREVLDKQAQLSAFK-------NPELGGMSLFLQTQQLKSALR 69
E++E+ + +K LE + + ++ ++Q ++ K N E + + Q ++
Sbjct: 626 ERLEKDV-AKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIK 684
Query: 70 MEIEYYQQESENLNKDLKILEKDY 93
E+ + EN+NKDLK K +
Sbjct: 685 RELS---DKLENINKDLKDFSKSF 705
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 23.9 bits (50), Expect = 1.9
Identities = 19/71 (26%), Positives = 37/71 (51%), Gaps = 7/71 (9%)
Query: 68 LRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLD 127
++ E YQ+ EN + LK ++ + ELE AK+ E E + Q +++ +++ L+
Sbjct: 59 IKKETLEYQKLFENKVESLKGVKIE------ELEDAKVTAENEIKSIQDLMQDYKRS-LE 111
Query: 128 ENAMILHWQKE 138
N + H +E
Sbjct: 112 TNTIPNHLNEE 122
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 23.5 bits (49), Expect = 2.4
Identities = 9/46 (19%), Positives = 26/46 (55%)
Query: 74 YYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILE 119
+ + + + + +++ EK + E+ K ++E+E Q ++++LE
Sbjct: 49 FAESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEFQVQRELLE 94
>ref|NP_224022.1| putative [Helicobacter pylori J99]
Length = 309
Score = 23.1 bits (48), Expect = 3.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 68 LRMEIEYYQQESENLNKDLKILEKDYLLANQEL 100
L+ + Y+Q +S ++ D IL KD+ N L
Sbjct: 140 LKTRLIYWQDKSVKVDWDKPILIKDFFKGNNYL 172
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 23.1 bits (48), Expect = 3.2
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 83 NKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMILH 134
+KDL + + ++ ++E+E+ K + ++Q +L++ LL E+ + H
Sbjct: 558 SKDLSLTPRQRIVIHREVERLKERVSHGHDEDQVLLDE----LLKESEYLAH 605
>ref|NP_223779.1| ATP synthase F1, subunit alpha [Helicobacter pylori J99]
Length = 503
Score = 23.1 bits (48), Expect = 3.2
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 52 LGGMSLFLQTQQLKSALRMEIEYYQ--QESENLNKDLKILEKDYLLANQELEKAKIILEK 109
+GG + T+Q+ LR+++ Y+ Q DL K ++LE+ + ++E
Sbjct: 367 VGGAAQIKATKQVSGTLRLDLAQYRELQAFTQFASDLDEASK------KQLERGQRMVEV 420
Query: 110 EKQKEQKILEKKEQALL 126
KQ L ++Q ++
Sbjct: 421 LKQAPYSPLPIEKQVVI 437
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 23.1 bits (48), Expect = 3.2
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 63 QLKSALRMEIEYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKE 122
++ L IEY ++ + LN+ L + LEK K+ L+K ++ LE
Sbjct: 360 KIDEVLTAPIEYEEKVFKKLNQALVM---------PLLEKFKLALDKTDFNDESALENAM 410
Query: 123 QALLDE 128
+++E
Sbjct: 411 HQIIEE 416
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori
J99]
Length = 673
Score = 23.1 bits (48), Expect = 3.2
Identities = 14/30 (46%), Positives = 18/30 (59%), Gaps = 3/30 (10%)
Query: 19 IEQKLESKRLELQQNEREVLDKQAQLSAFK 48
I K+ES LQ E+L K+AQL +FK
Sbjct: 29 ISYKVESV---LQSQATELLQKKAQLVSFK 55
>ref|NP_222727.1| OROTIDINE 5'-PHOSPHATE DECARBOXYLASE [Helicobacter pylori J99]
Length = 227
Score = 23.1 bits (48), Expect = 3.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 85 DLKILEKDYLLANQELEKAKIILE 108
DLK+ + Y +AN LE AK+ ++
Sbjct: 59 DLKLYDIPYTMANAALECAKLDID 82
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 22.7 bits (47), Expect = 4.2
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 83 NKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMILHWQKEGLH 141
NK+ + K+ N+E K + KE Q E K K+E+ + L ++ G++
Sbjct: 480 NKEEAVASKE----NKEENKTEAAAPKENQTENKTEVKEEKIEVPTKTTYLLLEEAGIN 534
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 22.7 bits (47), Expect = 4.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 18 KIEQKLESKRLELQQNEREVLDKQAQLSAFKNP 50
K E+K + LE Q L+K LS FK P
Sbjct: 539 KNEEKAQQLSLEASQTLSLCLEKGVTLSNFKAP 571
>ref|NP_223527.1| catalase [Helicobacter pylori J99]
Length = 505
Score = 22.7 bits (47), Expect = 4.2
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 95 LANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMILHWQKE 138
+ +++LE K K + +K LEK ++ + D +A +H K+
Sbjct: 460 IVDKQLEHFKKADPKYAEGVKKALEKHQKMMKDMHAKDMHHMKK 503
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 22.7 bits (47), Expect = 4.2
Identities = 12/45 (26%), Positives = 24/45 (52%), Gaps = 1/45 (2%)
Query: 75 YQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILE 119
+ + EN D K + D + E+ K++ EK+K++ +K+ E
Sbjct: 237 FDDDDENSVSDPK-KDDDSEEDEENEERKKVVSEKDKKRVEKVQE 280
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 22.3 bits (46), Expect = 5.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 80 ENLNKDLKILEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALL 126
EN+ D+K ++ E K++ K KE IL+ ++AL+
Sbjct: 602 ENMGVDIKETLENLHGVGVEFFNEKVVKFKGNDKEVSILKALKEALI 648
>ref|NP_223781.1| ATP synthase F0, subunit b [Helicobacter pylori J99]
Length = 171
Score = 22.3 bits (46), Expect = 5.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 89 LEKDYLLANQELEKAKIILEKEKQKEQKILEKKEQALLDENAMILHWQKE 138
L L ++ LE+ + L+ K+ ++K+L++ EQA +I KE
Sbjct: 55 LHSKSLEISKRLEEIQAQLKVSKEHKKKLLKELEQAKEKAELIISDANKE 104
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 22.3 bits (46), Expect = 5.4
Identities = 13/43 (30%), Positives = 28/43 (64%), Gaps = 3/43 (6%)
Query: 84 KDLKILEK-DYLLANQELEKAKIILEKEKQKEQKILEKKEQAL 125
K + + E+ +Y+L ++L K +L KE+++E++ E+ + AL
Sbjct: 255 KAISVAERQNYILQIRDLAKGCAVLYKEQEEERE--ERLKNAL 295
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 22.3 bits (46), Expect = 5.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 90 EKDYLLANQELEKAKIILEKEKQKEQKILEKKE 122
E D L++ +LE + + KE+ KE E KE
Sbjct: 5 ELDALMSGGDLENLEALEAKEEAKEPTKEEPKE 37
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 21.9 bits (45), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 25 SKRLELQQNEREVLDKQAQ 43
+K +QQNE+EV DK+ +
Sbjct: 7 NKAQAVQQNEQEVEDKEKE 25
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 21.9 bits (45), Expect = 7.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 102 KAKIILEKEKQKEQKILEKKEQALLDENAMILHWQKEGL 140
KAK I E+E +++ K K++Q E + +K GL
Sbjct: 32 KAKAINEEELEEQVKAKAKEQQKTQREKTLNGFLKKVGL 70
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 21.9 bits (45), Expect = 7.1
Identities = 11/24 (45%), Positives = 18/24 (74%), Gaps = 1/24 (4%)
Query: 86 LKILEKD-YLLANQELEKAKIILE 108
L++L K+ Y L+ Q+L+KAK + E
Sbjct: 470 LELLYKERYSLSKQDLQKAKFLNE 493
>ref|NP_222740.1| putative carboxynorspermidine decarboxylase [Helicobacter pylori
J99]
Length = 405
Score = 21.9 bits (45), Expect = 7.1
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 75 YQQESENLNKDLKILE 90
Y ESE L K+ KILE
Sbjct: 12 YALESERLEKNAKILE 27
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 21.6 bits (44), Expect = 9.3
Identities = 11/41 (26%), Positives = 22/41 (52%)
Query: 73 EYYQQESENLNKDLKILEKDYLLANQELEKAKIILEKEKQK 113
E ++ ++ LN + ++LE ++ E ++ I KEK K
Sbjct: 481 ENHKSLAKTLNNEERVLEIARMIGGSENIESAISFAKEKLK 521
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 21.6 bits (44), Expect = 9.3
Identities = 8/22 (36%), Positives = 17/22 (76%)
Query: 102 KAKIILEKEKQKEQKILEKKEQ 123
K K + + EK +E+K++E+K++
Sbjct: 131 KHKALKKVEKVEEKKVVEEKKE 152
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 21.6 bits (44), Expect = 9.3
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 33 NEREVLDKQAQLSAFKNPELGGMSLFLQTQQLKSALRMEIEYYQQESENLNKDLKI 88
+ER + ++ A+K ++ + + +Q + LK L+ME Q E + + LKI
Sbjct: 609 DERVTENFNSKYIAYKFFKINFVDIVVQNKVLKLYLKMEFNELQDE---IKEKLKI 661
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 21.6 bits (44), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 89 LEKDYLLANQELEKAKIILEKEKQK 113
L +Y L LE KI+LE+ ++K
Sbjct: 36 LNTEYFLWPSMLELKKILLEENRKK 60
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.310 0.128 0.323
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,667
Number of Sequences: 1491
Number of extensions: 7928
Number of successful extensions: 113
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 89
length of query: 142
length of database: 494,079
effective HSP length: 69
effective length of query: 73
effective length of database: 391,200
effective search space: 28557600
effective search space used: 28557600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 44 (21.6 bits)