BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644889|ref|NP_207059.1| hypothetical protein
[Helicobacter pylori 26695]
(132 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222966.1| putative [Helicobacter pylori J99] 78 9e-17
ref|NP_223990.1| putative [Helicobacter pylori J99] 24 1.6
ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter ... 24 1.6
ref|NP_224090.1| putative [Helicobacter pylori J99] 23 2.1
ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPH... 23 2.1
ref|NP_223101.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_222981.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 4.7
ref|NP_224003.1| putative [Helicobacter pylori J99] 22 4.7
ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTE... 22 4.7
ref|NP_223197.1| cag island protein [Helicobacter pylori J99] 22 4.7
ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 22 6.1
ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobac... 22 6.1
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 22 6.1
ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 22 6.1
ref|NP_223145.1| Molybdate ABC transporter, ATP-binding pro... 22 8.0
>ref|NP_222966.1| putative [Helicobacter pylori J99]
Length = 152
Score = 77.8 bits (190), Expect = 9e-17
Identities = 36/39 (92%), Positives = 38/39 (97%)
Query: 94 SQLIKEFEFKMKPIDSKEQELINLFNLKFGHFSWENYLA 132
S+LIKEFEFK+KPIDSKEQELINLFNLKFG FSWENYLA
Sbjct: 114 SKLIKEFEFKIKPIDSKEQELINLFNLKFGRFSWENYLA 152
Score = 43.9 bits (102), Expect = 2e-06
Identities = 21/23 (91%), Positives = 22/23 (95%)
Query: 73 GLDAKRSSSDEFLEIKQVSFQSQ 95
GLD KRSSSDEFLEIKQVSFQS+
Sbjct: 21 GLDTKRSSSDEFLEIKQVSFQSK 43
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 23.9 bits (50), Expect = 1.6
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 20/106 (18%)
Query: 27 SYQALKPIEEIQNKYNKHDNDSFLNELRDS-MVALYLDY-------ELINIQKHGLDAKR 78
SYQ L I I+NK D LN+L +S + YL+ + +N G D +
Sbjct: 60 SYQGLN-IGYIENKRVGTD----LNQLLESDQILKYLELNPNLMLTDYLNFVWVGKDEEN 114
Query: 79 SSSDEFLEIKQVSFQSQLIKEFEFKMKPIDSKEQELINLFNLKFGH 124
S + +++S S ++E K+KP E++LI LF F H
Sbjct: 115 KPSTK----RKISIAS--LEELP-KLKPNPQTERDLIELFRGFFNH 153
>ref|NP_223362.1| EXCINUCLEASE ABC SUBUNIT A. [Helicobacter pylori J99]
Length = 941
Score = 23.9 bits (50), Expect = 1.6
Identities = 18/70 (25%), Positives = 34/70 (47%), Gaps = 10/70 (14%)
Query: 32 KPIEEIQNKYNKHDNDSFLNE---------LRDSMVALYLDYEL-INIQKHGLDAKRSSS 81
KPIEE+ + +N + ++LNE L++ + ++ Y++ + G DA+ S
Sbjct: 429 KPIEEVYHFFNDPTHFNYLNEQEKKIAEPILKEILERVFFLYDVGLGYLTLGRDARTISG 488
Query: 82 DEFLEIKQVS 91
E I+ S
Sbjct: 489 GESQRIRIAS 498
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 23.5 bits (49), Expect = 2.1
Identities = 11/52 (21%), Positives = 24/52 (46%)
Query: 14 GCFEPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNELRDSMVALYLDYE 65
G + D + ++ ++ I+ + Y+ D D + + L+ LY DY+
Sbjct: 190 GALDLFDSSIASKENASVSAIDALVTAYHLQDADLYYHYLKIVRDTLYKDYK 241
>ref|NP_223626.1| 2,3-BISPHOSPHOGLYCERATE-INDEPENDENT PHOSPHOGLYCERATE MUTASE
[Helicobacter pylori J99]
Length = 491
Score = 23.5 bits (49), Expect = 2.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 27 SYQALKPIEEIQNKYNKHDNDSFL 50
++ L P E IQ++Y+K+ D F+
Sbjct: 201 NHTPLSPSEYIQSQYDKNITDEFI 224
>ref|NP_223101.1| putative [Helicobacter pylori J99]
Length = 347
Score = 23.1 bits (48), Expect = 2.7
Identities = 21/92 (22%), Positives = 40/92 (42%), Gaps = 4/92 (4%)
Query: 1 MQFLNQSLGFFNKGCFEPIDRNFITESYQALKPIEEIQNKYNKHDNDSFLNE---LRDSM 57
M+ + QS N+ F+ +RN+ + + +K ++N +DND F + L
Sbjct: 167 MRMITQS-SELNRFMFDDENRNYKLKLLEEVKNYLFLENAPVAYDNDLFKLKKIALGGDP 225
Query: 58 VALYLDYELINIQKHGLDAKRSSSDEFLEIKQ 89
+D N+Q H L K+ + + K+
Sbjct: 226 TTETMDNISSNVQTHLLSLKKHDCSVYYQDKK 257
>ref|NP_222981.1| putative [Helicobacter pylori J99]
Length = 431
Score = 23.1 bits (48), Expect = 2.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 47 DSFLNELRD--SMVALYLDYELINIQKHGLDAKRSSSDEF 84
+ F N++ D S+ L Y L N +K GLD +S D +
Sbjct: 155 NKFYNQVHDEDSLEKLITIYFLQNRKKEGLDLLQSHIDRY 194
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 22.3 bits (46), Expect = 4.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 26 ESYQALKPIEEIQNKYNKHDNDSFLNELRD 55
ESY+ + +QN +N+ D LN++++
Sbjct: 554 ESYKYRAYCKMLQNFFNEKDEKKALNKIKE 583
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.3 bits (46), Expect = 4.7
Identities = 11/47 (23%), Positives = 26/47 (54%), Gaps = 2/47 (4%)
Query: 81 SDEFLEIKQVSFQSQLI--KEFEFKMKPIDSKEQELINLFNLKFGHF 125
++E L +++ +++ K F+ + +D ++Q LIN F + +F
Sbjct: 20 AEEELNANEINDPLEMLDFKSFDDNKELLDYQQQALINAFRVLVAYF 66
>ref|NP_223680.1| putative POLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter pylori
J99]
Length = 389
Score = 22.3 bits (46), Expect = 4.7
Identities = 7/12 (58%), Positives = 9/12 (74%)
Query: 118 FNLKFGHFSWEN 129
+N+K G FSW N
Sbjct: 128 YNMKLGQFSWLN 139
>ref|NP_223197.1| cag island protein [Helicobacter pylori J99]
Length = 252
Score = 22.3 bits (46), Expect = 4.7
Identities = 12/45 (26%), Positives = 23/45 (50%), Gaps = 1/45 (2%)
Query: 78 RSSSDEFLEIKQVSFQSQLIKEFEFKMKP-IDSKEQELINLFNLK 121
R D+ ++ VSFQ+Q ++ F ++ +D E I N++
Sbjct: 114 RDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQ 158
>ref|NP_223720.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 936
Score = 21.9 bits (45), Expect = 6.1
Identities = 8/26 (30%), Positives = 18/26 (68%)
Query: 91 SFQSQLIKEFEFKMKPIDSKEQELIN 116
+FQ +++F+ ++KP+D+ E I+
Sbjct: 411 AFQRLQVQDFDGRIKPLDTISIEYIH 436
>ref|NP_223565.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 676
Score = 21.9 bits (45), Expect = 6.1
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 69 IQKHGLDAKRSSSDEFLEIKQVS 91
++ H + +KR S F E K+V+
Sbjct: 354 LRSHNVPSKRKGSASFFESKEVA 376
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 21.9 bits (45), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (59%), Gaps = 5/35 (14%)
Query: 80 SSDEFLEI-----KQVSFQSQLIKEFEFKMKPIDS 109
+ +E+L+I + + + +LIKE E KM+ + S
Sbjct: 186 TKEEYLKIAKECLEMIENKDRLIKELELKMERLSS 220
>ref|NP_223441.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 865
Score = 21.9 bits (45), Expect = 6.1
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 45/160 (28%)
Query: 17 EPIDRNFITESYQ-ALKPIEEIQNKYNKH--DNDSFLNELRDSM---------------- 57
E I+ +T + + A K +E + + KH + D NE R S+
Sbjct: 576 EHIESKLVTRAVENAQKKVENLHFESRKHLLEYDDVANEQRKSVYKFRDELLDINYDISA 635
Query: 58 -VALYLDYELINI--QKHGLDAKRSSSDEFLEIKQV---------------------SFQ 93
+A +Y L I + D + S +E L +K + F
Sbjct: 636 KIAENREYALNQIFSKLKAFDHQNLSEEELLGLKNILKEDFNASVELEDLEKASPIEKFV 695
Query: 94 SQLIK-EFEFKMKPIDSKEQELI-NLFNLKFGHFSWENYL 131
++ +K ++E KMK +DS+++ I + L+ +W +L
Sbjct: 696 AEKLKSDYENKMKALDSEQRSRIERIVYLQILDNAWREHL 735
>ref|NP_223145.1| Molybdate ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 265
Score = 21.6 bits (44), Expect = 8.0
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 10 FFNKGCFEPIDRNFITESYQALKPIEEIQN 39
F N G +P N + + +KP+ E +N
Sbjct: 204 FLNNGVIDPNQENRLFSNRLLVKPLFEDEN 233
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.138 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,891
Number of Sequences: 1491
Number of extensions: 6875
Number of successful extensions: 31
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 17
length of query: 132
length of database: 494,079
effective HSP length: 69
effective length of query: 63
effective length of database: 391,200
effective search space: 24645600
effective search space used: 24645600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 44 (21.6 bits)