BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644890|ref|NP_207060.1| hypothetical protein
[Helicobacter pylori 26695]
(200 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222967.1| putative [Helicobacter pylori J99] 285 5e-79
ref|NP_222968.1| putative [Helicobacter pylori J99] 61 2e-11
ref|NP_224003.1| putative [Helicobacter pylori J99] 29 0.099
ref|NP_222842.1| L-serine transporter, similar to E. coli n... 28 0.22
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 27 0.49
ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99] 26 0.64
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 26 0.84
ref|NP_224188.1| putative [Helicobacter pylori J99] 25 1.4
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 25 1.4
ref|NP_224153.1| putative [Helicobacter pylori J99] 25 1.9
ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicoba... 25 1.9
ref|NP_224187.1| putative [Helicobacter pylori J99] 24 2.4
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 24 2.4
ref|NP_223055.1| putative [Helicobacter pylori J99] 24 3.2
ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTR... 23 4.2
ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Heli... 23 4.2
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 23 4.2
ref|NP_223618.1| putative [Helicobacter pylori J99] 23 5.4
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 23 7.1
ref|NP_223749.1| putative lipopolysaccharide biosynthesis p... 23 7.1
ref|NP_222912.1| putative [Helicobacter pylori J99] 23 7.1
ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrop... 23 7.1
ref|NP_224192.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 22 9.3
ref|NP_224044.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_223651.1| putative [Helicobacter pylori J99] 22 9.3
ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 22 9.3
ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 22 9.3
ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter... 22 9.3
ref|NP_222923.1| putative [Helicobacter pylori J99] 22 9.3
>ref|NP_222967.1| putative [Helicobacter pylori J99]
Length = 172
Score = 285 bits (730), Expect = 5e-79
Identities = 144/162 (88%), Positives = 152/162 (92%)
Query: 8 VFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL 67
+FGL LAD+ILERFKDFMRE PEPYKFLQVFYAQEKERFLNHKM+DYIKQNKSKEEASIL
Sbjct: 1 MFGLSLADMILERFKDFMREYPEPYKFLQVFYAQEKERFLNHKMNDYIKQNKSKEEASIL 60
Query: 68 ARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGE 127
ARQGFVS +GRALEKIIELLLKDFCIKNNVKMTNDK LRAKRINGELD+VKRAL VHFG
Sbjct: 61 ARQGFVSVIGRALEKIIELLLKDFCIKNNVKMTNDKTLRAKRINGELDKVKRALLVHFGG 120
Query: 128 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTETPYWKLK 169
YSVLPDIILYQTNKDNIKILAILSVKNSFRERFT+ ++K
Sbjct: 121 YSVLPDIILYQTNKDNIKILAILSVKNSFRERFTKDALLEIK 162
>ref|NP_222968.1| putative [Helicobacter pylori J99]
Length = 69
Score = 60.8 bits (146), Expect = 2e-11
Identities = 27/29 (93%), Positives = 29/29 (99%)
Query: 171 LQSPVTSHIKVFMITPDNDDEISFKDKPK 199
+QSPVTSHIKVFMITPDND+EISFKDKPK
Sbjct: 1 MQSPVTSHIKVFMITPDNDEEISFKDKPK 29
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 28.9 bits (63), Expect = 0.099
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 16 VILERFKDFMREQPEPYKFLQVFYA----QEKERFLNHKMSDYIK-QNKSKEEASILARQ 70
V++ F+DF + E Y F Q Y+ ++ LNH + + K +N + + R
Sbjct: 61 VLVAYFRDFKESKKEFYAFYQKHYSFANCDFAKKKLNHLLKSHFKVENHCVRFENFINRL 120
Query: 71 GFVSAVGR----ALEKIIELL 87
F A G + K++ELL
Sbjct: 121 AFYMATGSGKTIVIIKLVELL 141
>ref|NP_222842.1| L-serine transporter, similar to E. coli nhaB [Helicobacter pylori
J99]
Length = 413
Score = 27.7 bits (60), Expect = 0.22
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 46 FLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIELLLKDFCIKNNVKMTN 101
+L H+ Y +K KE+ +++ R F + G + + L + C+ V +TN
Sbjct: 61 YLGHRALAYFIGSKDKEDITMVVRSHFGAQWGFLITLLYFLAIYPICLAYGVGITN 116
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 26.6 bits (57), Expect = 0.49
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 23 DFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASILAR 69
D++ +P FL+ +E FL K S I S E+A +LA+
Sbjct: 2586 DYIPSGYKPSLFLEGANGEEMRYFLEPKTSIAISDGSSVEQAEVLAK 2632
>ref|NP_223094.1| HOMOSERINE KINASE [Helicobacter pylori J99]
Length = 293
Score = 26.2 bits (56), Expect = 0.64
Identities = 22/97 (22%), Positives = 41/97 (41%), Gaps = 6/97 (6%)
Query: 91 FCIKNNVKMTNDKILRAKRINGELDRVKRALWVHFGEYSVLPDIILYQTNKDNIKILAIL 150
F + N V +T + I G + L F ++L ++Y+ + DNI
Sbjct: 76 FLLHNKVPITRGMGSSSAMIVGAVASAFAFLGFAFDRENILNTALIYENHPDNI----TP 131
Query: 151 SVKNSFRERFTETPYWKLKLLQSPVTSHIKVFMITPD 187
+V + F E K+ L++ + S +K M+ P+
Sbjct: 132 AVFGGYNAAFVEKK--KVISLKTKIPSFLKAVMVIPN 166
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 25.8 bits (55), Expect = 0.84
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 37 VFYAQEKERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIEL 86
VF+ KER + +++ KQN K + SI + + G EK EL
Sbjct: 181 VFFETNKERLILKTLNEENKQNDKKLKRSIKEKALYFEKHGVKKEKGFEL 230
>ref|NP_224188.1| putative [Helicobacter pylori J99]
Length = 333
Score = 25.0 bits (53), Expect = 1.4
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Query: 1 MDFYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS 60
+D +GLK G AD+ +E+ ++E PE F+ E LN+ IK K+
Sbjct: 216 IDNFGLKYVKFGRADISVEK---IVKENPE-IIFIWWISPLSPEDVLNNPKFSTIKAIKN 271
Query: 61 KE 62
K+
Sbjct: 272 KQ 273
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 25.0 bits (53), Expect = 1.4
Identities = 15/56 (26%), Positives = 30/56 (52%), Gaps = 2/56 (3%)
Query: 42 EKERFLNHKMSDYIKQNKSKEEASILARQ--GFVSAVGRALEKIIELLLKDFCIKN 95
+K +FLN M+ + +KE S+L + F+ A +++ LLL+ C+++
Sbjct: 486 QKAKFLNEFMASELLLAPTKESLSVLYEEQLEFLKPQIAACKRLSALLLEQECLEH 541
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 24.6 bits (52), Expect = 1.9
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 83 IIELLLKDFCIKNNVKMTNDKILRAKRINGELDRVKRAL 121
++++L KDF + ++ + K KR+N + +R+K L
Sbjct: 165 LLDILEKDFLSYQHKELEHKKNQIIKRLNAQKERLKEKL 203
>ref|NP_223345.1| FERROUS IRON TRANSPORT PROTEIN B [Helicobacter pylori J99]
Length = 642
Score = 24.6 bits (52), Expect = 1.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 51 MSDYIKQNKSKEEASILARQGFVSAVG 77
+SD IK+N + E+ + L G + VG
Sbjct: 259 LSDSIKENVANEDLASLVGDGIIGGVG 285
>ref|NP_224187.1| putative [Helicobacter pylori J99]
Length = 335
Score = 24.3 bits (51), Expect = 2.4
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 4/62 (6%)
Query: 1 MDFYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS 60
+D +GLK G AD+ +E+ ++E PE F+ E LN+ IK K+
Sbjct: 218 IDNFGLKYVKFGRADISVEK---IVKENPE-IIFIWWVSPLTPEDVLNNPKFSTIKAIKN 273
Query: 61 KE 62
K+
Sbjct: 274 KQ 275
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 24.3 bits (51), Expect = 2.4
Identities = 20/70 (28%), Positives = 33/70 (46%), Gaps = 8/70 (11%)
Query: 20 RFKDFMREQPEPYKF-------LQVFYAQEKERFLNHKMSDYIKQNKSKEEASILARQGF 72
+F+DF++E EP K L + + + F ++I +N +E +I R F
Sbjct: 231 KFEDFVKELEEPKKVGFQNVENLNAYINEYELLFCATSSPNFIVRNSMLKE-TIFRRFWF 289
Query: 73 VSAVGRALEK 82
AV R +EK
Sbjct: 290 DLAVPRNIEK 299
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 23.9 bits (50), Expect = 3.2
Identities = 15/67 (22%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 33 KFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIELLLKDFC 92
K +Q FY +E+ERF N +++ + + + +G + + + + E++L D+
Sbjct: 613 KKIQAFYKKERERF-NAEITILDLEKSFETIIQGVIFKGRIDRIDKTADN--EIILLDYK 669
Query: 93 IKNNVKM 99
K+++K+
Sbjct: 670 FKSDLKL 676
>ref|NP_224129.1| TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 641
Score = 23.5 bits (49), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (71%)
Query: 134 IILYQTNKDNIKILAILS 151
I+ YQ NKDN K++A S
Sbjct: 239 ILCYQKNKDNKKMIAKFS 256
>ref|NP_224015.1| putative TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 779
Score = 23.5 bits (49), Expect = 4.2
Identities = 12/42 (28%), Positives = 19/42 (44%)
Query: 19 ERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKS 60
ER ++ + Q FL+ + E F NH + + K KS
Sbjct: 244 ERIEESKKNQERFNAFLENLSFLDLENFFNHSRNAFFKAAKS 285
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 23.5 bits (49), Expect = 4.2
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
Query: 39 YAQEKERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGRALEKIIELL 87
Y +K + L HK+ DY + +E+ +ALE++++ L
Sbjct: 266 YYHQKAQILGHKLKDYDRYAPLNDES-------ITMTYSQALEEVLKTL 307
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 23.1 bits (48), Expect = 5.4
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 56 KQNKSKEEASILARQGFVSAVGRALEKIIELLLKDFCIK----NNVKMTN 101
K N+ E + +Q + +EKI KDFC + NN ++++
Sbjct: 136 KPNEFNSEIESIMQQNLIKNAKLEIEKINLSFSKDFCAEFASLNNTQLSS 185
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 22.7 bits (47), Expect = 7.1
Identities = 10/39 (25%), Positives = 22/39 (55%)
Query: 52 SDYIKQNKSKEEASILARQGFVSAVGRALEKIIELLLKD 90
S YI+QN E++ + ++ A+G+ ++++L D
Sbjct: 59 STYIRQNAIALESAAVPLAYYLEAMGQQTRVLMQMLCPD 97
>ref|NP_223749.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 398
Score = 22.7 bits (47), Expect = 7.1
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 12/59 (20%)
Query: 90 DFCIKNNVKMTNDKILRAKRINGELDRVK------RALWVHFGEYSVLPDIILYQTNKD 142
D+ K N + ++L+ GELD K +AL + EY V P Y T KD
Sbjct: 173 DYQRKKNFTLRMHELLKGNEAKGELDFTKWCWPNMKALGI---EYCVFP---YYYTIKD 225
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 22.7 bits (47), Expect = 7.1
Identities = 13/46 (28%), Positives = 23/46 (49%)
Query: 22 KDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASIL 67
KD ++E E Y + F Q E N + D IK++ + + S++
Sbjct: 198 KDIIKEIDEKYPINENFKRQFNEFESNIEKHDEIKKDFERNKESLI 243
>ref|NP_222759.1| phosphomannose isomerase/GDP-mannose pyrophosphorylase
[Helicobacter pylori J99]
Length = 470
Score = 22.7 bits (47), Expect = 7.1
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 48 NHKMSDYIKQNKSKEEASILARQGFVSAVGRALEK 82
+H + D+ + ++A LA++GF+ G ++EK
Sbjct: 111 DHLIKDFQAYENAIKKAINLAQKGFLVTFGISIEK 145
>ref|NP_224192.1| putative [Helicobacter pylori J99]
Length = 147
Score = 22.3 bits (46), Expect = 9.3
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 3 FYGLKVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFL 47
F L +FG ++ +D M P FL +FYA++ + FL
Sbjct: 11 FLCLGIFGFYFYSLL----RDLMPFLPPMLGFLFLFYAKKYDHFL 51
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 22.3 bits (46), Expect = 9.3
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 13 LADVIL----ERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQNKSKEEASILA 68
L+D +L + F+D ++EQ +P K ++ + KM +I N ++ L
Sbjct: 247 LSDEVLAHQKKAFEDELKEQGKPEKIW--------DKIVPGKMERFIADNTLIDQRLTLL 298
Query: 69 RQGFVSAVGRALEKIIELLLKDFCIKNNVKMT 100
Q +V + + ++I K++ +N+K+T
Sbjct: 299 GQFYVMDDKKTIAQVIADCSKEW--DDNLKIT 328
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 22.3 bits (46), Expect = 9.3
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 43 KERFLNHKMSDYIK 56
KER+L+H + D++K
Sbjct: 663 KERYLSHALLDFLK 676
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 22.3 bits (46), Expect = 9.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 YAQEKERFLNHKMSDYIKQNKSKEEA 64
YA+E FL++K IK K K+ A
Sbjct: 281 YAKEIREFLSYKPIKEIKDFKDKDTA 306
>ref|NP_223504.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 528
Score = 22.3 bits (46), Expect = 9.3
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 43 KERFLNHKMSDYIKQNKSKEEASILARQGFVSAVGR---ALEKIIELLLKD 90
+E N ++ Y++Q +KE I A G +S + + L +E ++K+
Sbjct: 475 QENDYNLSVNRYVEQEDTKEIIDIKALNGEISQIVKKQSVLRNSLESIIKE 525
>ref|NP_223306.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 439
Score = 22.3 bits (46), Expect = 9.3
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 18 LERFKDFMREQPEPYKFLQVFYAQEKERFLNH 49
LER K+ + + P+++L + EK++ NH
Sbjct: 101 LEREKEKAKNEKRPFRYLDEWATLEKDK--NH 130
>ref|NP_223239.1| RIBOSE 5-PHOSPHATE ISOMERASE [Helicobacter pylori J99]
Length = 151
Score = 22.3 bits (46), Expect = 9.3
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 5 GLKVFGLGLADVILERF 21
G K+ G+G+A+ ILE F
Sbjct: 112 GEKISGIGVAESILEAF 128
>ref|NP_222923.1| putative [Helicobacter pylori J99]
Length = 368
Score = 22.3 bits (46), Expect = 9.3
Identities = 20/84 (23%), Positives = 33/84 (38%), Gaps = 19/84 (22%)
Query: 1 MDFYGL---KVFGLGLADVILERFKDFMREQPEPYKFLQVFYAQEKERFLNHKMSDYIKQ 57
+D Y L K + + L R+KD + E P+ L ++FLN +
Sbjct: 269 LDLYALSAIKFEPISVERYTLWRYKDLLLENPKLGVVLNASNEVAMKKFLNQE------- 321
Query: 58 NKSKEEASILARQGFVSAVGRALE 81
+A GF+ + +ALE
Sbjct: 322 ---------IAFGGFIQIISQALE 336
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.140 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,126
Number of Sequences: 1491
Number of extensions: 10542
Number of successful extensions: 47
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 31
length of query: 200
length of database: 494,079
effective HSP length: 73
effective length of query: 127
effective length of database: 385,236
effective search space: 48924972
effective search space used: 48924972
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)