BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644896|ref|NP_207066.1| hypothetical protein
[Helicobacter pylori 26695]
(80 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222974.1| putative [Helicobacter pylori J99] 157 5e-41
ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99] 26 0.17
ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99] 26 0.17
ref|NP_223614.1| putative [Helicobacter pylori J99] 25 0.22
ref|NP_223988.1| putative [Helicobacter pylori J99] 25 0.29
ref|NP_223526.1| putative [Helicobacter pylori J99] 25 0.38
ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobact... 24 0.64
ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter... 23 1.1
ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Heli... 23 1.4
ref|NP_222869.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223995.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_222827.1| putative [Helicobacter pylori J99] 21 4.2
ref|NP_223464.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_223446.1| putative [Helicobacter pylori J99] 20 9.3
ref|NP_223265.1| putative secretion/efflux abc transporter,... 20 9.3
ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Hel... 20 9.3
>ref|NP_222974.1| putative [Helicobacter pylori J99]
Length = 80
Score = 157 bits (396), Expect = 5e-41
Identities = 77/80 (96%), Positives = 79/80 (98%)
Query: 1 MKLVLAKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60
MKLVLAKNTRKSDAKSVELEDLY +F+EDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY
Sbjct: 1 MKLVLAKNTRKSDAKSVELEDLYKKFNEDKRSIFYFAPTNAHKDMLKAVDFFKEKGHTAY 60
Query: 61 LDEVRVSTDEKDFLYELHII 80
LDEVRVSTDEKDFLYELHII
Sbjct: 61 LDEVRVSTDEKDFLYELHII 80
>ref|NP_223728.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
Length = 455
Score = 25.8 bits (55), Expect = 0.17
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 42 HKDMLKAVDFFKEKGHTAYLDE 63
H +ML+ DF + K HT YL+E
Sbjct: 432 HIEMLENADFRQAKIHTKYLEE 453
>ref|NP_222917.1| 90kDa chaperone [Helicobacter pylori J99]
Length = 621
Score = 25.8 bits (55), Expect = 0.17
Identities = 18/80 (22%), Positives = 36/80 (44%), Gaps = 19/80 (23%)
Query: 11 KSDAKSVELEDLYHEFSED----------------KRSIFYFAPTNAHKDMLKAVDFFKE 54
KS+ K + +D Y F+ D + + ++ P+ A D+ + VD+ +
Sbjct: 243 KSELKEKDYKDFYQSFAHDNSEPLSYIHNKVEGSLEYTTLFYIPSKAPFDLFR-VDY--K 299
Query: 55 KGHTAYLDEVRVSTDEKDFL 74
G Y+ V ++ D+K+ L
Sbjct: 300 SGVKLYVKRVFITDDDKELL 319
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 25.4 bits (54), Expect = 0.22
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 5 LAKNTRK-SDAKSVELEDLYHEFSEDKRSIFYF 36
L N R+ D K+ E+ Y EF E K+ + YF
Sbjct: 121 LQNNLREWRDLKNTPEEENYREFEEIKKMVLYF 153
>ref|NP_223988.1| putative [Helicobacter pylori J99]
Length = 290
Score = 25.0 bits (53), Expect = 0.29
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 6 AKNTRKSDAKSVELEDLYHEFSEDKRSIFYFAPTNAHKDMLKAVDFFKEK 55
AK + D +LE L H + E+ + FYF +K+ +++KE+
Sbjct: 121 AKKRGQIDNFERKLEALIHRYGENIQGYFYFIDEGLNKNQ----NYYKEE 166
>ref|NP_223526.1| putative [Helicobacter pylori J99]
Length = 292
Score = 24.6 bits (52), Expect = 0.38
Identities = 17/45 (37%), Positives = 21/45 (45%), Gaps = 2/45 (4%)
Query: 3 LVLAKNTRKSDAKSVE--LEDLYHEFSEDKRSIFYFAPTNAHKDM 45
L LA+N+ +A VE L+D F F P N HKDM
Sbjct: 209 LKLAQNSVVENASRVEVYLKDSLLAFDFQNNHKEVFIPLNRHKDM 253
>ref|NP_224207.1| PYRIDOXAL PHOSPHATE SYNTHETASE [Helicobacter pylori J99]
Length = 262
Score = 23.9 bits (50), Expect = 0.64
Identities = 14/37 (37%), Positives = 20/37 (53%), Gaps = 1/37 (2%)
Query: 3 LVLAKNTRKSDAKSVEL-EDLYHEFSEDKRSIFYFAP 38
L +AKNT K D ++ L ED H +ED + +P
Sbjct: 28 LFIAKNTHKVDLITIHLREDKRHIQNEDVLRLLEISP 64
>ref|NP_224162.1| ELONGATION FACTOR TS (EF-TS) [Helicobacter pylori J99]
Length = 355
Score = 23.1 bits (48), Expect = 1.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 44 DMLKAVDFFKEKG 56
D+ KA+DF +EKG
Sbjct: 33 DLQKAIDFLREKG 45
>ref|NP_222920.1| GLUCOSE INHIBITED DIVISION PROTEIN A [Helicobacter pylori J99]
Length = 621
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 19 LEDLYHEFSEDKRSIFYFAPTNAHK 43
+ED + FSE +R + P HK
Sbjct: 277 IEDKINRFSEKERHQLFLEPQTIHK 301
>ref|NP_222869.1| putative [Helicobacter pylori J99]
Length = 305
Score = 21.6 bits (44), Expect = 3.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 32 SIFYFAPTNAHKDMLKAVDFFKE 54
++ Y+ A KD+ KA ++K+
Sbjct: 247 AVMYYTGKGAPKDLEKATSYYKK 269
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 21.2 bits (43), Expect = 4.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 34 FYFAPTNAHKD---MLKAVDFFKEKGHTAYLDEVRVSTDEKDFLYEL 77
F F+ N D +LKA+ F EK + L E + ++KD + L
Sbjct: 69 FDFSRLNVENDTLELLKALYFKLEKLESLLLKENLLELEQKDRIIAL 115
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 21.2 bits (43), Expect = 4.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 43 KDMLKAVDFFKEKGHTAYLDEVRVSTDEKDF 73
K+ L+ +DF + + +A +D V+ D+K F
Sbjct: 528 KNKLEELDFEELENLSAEIDNVKELFDDKRF 558
>ref|NP_223464.1| putative [Helicobacter pylori J99]
Length = 200
Score = 20.4 bits (41), Expect = 7.1
Identities = 7/26 (26%), Positives = 15/26 (56%)
Query: 30 KRSIFYFAPTNAHKDMLKAVDFFKEK 55
K ++F+ NA+ +L+ + FK +
Sbjct: 74 KSAVFFEQNKNAYATLLENISLFKNR 99
>ref|NP_223446.1| putative [Helicobacter pylori J99]
Length = 506
Score = 20.0 bits (40), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 8 NTRKSDAKSVELEDLYHEFSE 28
+T+K K++EL D + FS+
Sbjct: 175 HTKKLPFKTIELNDKEYYFSD 195
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 20.0 bits (40), Expect = 9.3
Identities = 7/19 (36%), Positives = 13/19 (67%)
Query: 46 LKAVDFFKEKGHTAYLDEV 64
+K ++FF+ K HT L+ +
Sbjct: 113 VKNLNFFENKDHTIKLNTI 131
>ref|NP_222878.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99]
Length = 363
Score = 20.0 bits (40), Expect = 9.3
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 62 DEVRVSTDEKDFLYELH 78
D++ + DEKD Y+ +
Sbjct: 227 DDIDIEIDEKDVRYDYY 243
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,297
Number of Sequences: 1491
Number of extensions: 3768
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of query: 80
length of database: 494,079
effective HSP length: 56
effective length of query: 24
effective length of database: 410,583
effective search space: 9853992
effective search space used: 9853992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 40 (20.0 bits)