BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644898|ref|NP_207068.1| hypothetical protein
[Helicobacter pylori 26695]
(162 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222976.1| putative [Helicobacter pylori J99] 323 2e-90
ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99] 27 0.36
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 25 1.0
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 24 1.8
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 24 2.3
ref|NP_223399.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_224151.1| putative [Helicobacter pylori J99] 23 5.1
ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Heli... 23 5.1
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 23 5.1
ref|NP_224205.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223620.1| putative [Helicobacter pylori J99] 22 6.7
ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacte... 22 6.7
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 22 6.7
ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEI... 22 6.7
>ref|NP_222976.1| putative [Helicobacter pylori J99]
Length = 217
Score = 323 bits (827), Expect = 2e-90
Identities = 159/162 (98%), Positives = 160/162 (98%)
Query: 1 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 60
MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE
Sbjct: 56 MIGFAYLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKE 115
Query: 61 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 120
GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE
Sbjct: 116 GCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVVCKNAWRLNTWDQFEIPKPFSE 175
Query: 121 VYYYMLESVIIPKEWELSRAKEYLKTRMDSVGFEEPQRGLGA 162
V YYMLESVIIPKEWELS+AKEYLKTRMDSVGFEE QRGLGA
Sbjct: 176 VRYYMLESVIIPKEWELSKAKEYLKTRMDSVGFEESQRGLGA 217
>ref|NP_223124.1| PROTEASE DO [Helicobacter pylori J99]
Length = 476
Score = 26.6 bits (57), Expect = 0.36
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 63 DVAITPDGPKGPRHSIADGVIALAQKSGVGISA 95
D+ P G S+ G+++ KSG+GI++
Sbjct: 174 DLVFAIGNPFGVGESVTQGIVSALNKSGIGINS 206
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 25.0 bits (53), Expect = 1.0
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 6 YLRLQKPSVYVIASQHFDGSIAAGLFESFGFKNI 39
Y +K S +++ S+ FD G F FGFKNI
Sbjct: 404 YQAPEKRSKHIMPSEIFDD----GTFTYFGFKNI 433
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 24.3 bits (51), Expect = 1.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 29 GLFESFGFKNIRGSSKKGGVKVLIEGLKRL 58
G+F+ G K R SKK + VL E K L
Sbjct: 305 GVFQGIGEKIYRADSKKDLLSVLFENKKFL 334
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 23.9 bits (50), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 22 FDGSIAAGLFESFGF 36
FDG IA L+++FGF
Sbjct: 377 FDGKIAFKLYDTFGF 391
>ref|NP_223399.1| putative [Helicobacter pylori J99]
Length = 404
Score = 23.5 bits (49), Expect = 3.0
Identities = 11/53 (20%), Positives = 25/53 (46%)
Query: 47 GVKVLIEGLKRLKEGCDVAITPDGPKGPRHSIADGVIALAQKSGVGISACRVV 99
G+KV +EGL+ L + ++ RH ++ + + ++ I C+ +
Sbjct: 210 GLKVPVEGLEELVDETKKCLSDAEKNKKRHFLSIQRVKIQERKQAMIEECKTI 262
>ref|NP_224151.1| putative [Helicobacter pylori J99]
Length = 307
Score = 22.7 bits (47), Expect = 5.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 136 ELSRAKEYLKTRMDSVGFE 154
EL +AKE++ T ++ GFE
Sbjct: 47 ELEQAKEWVLTLLEDEGFE 65
>ref|NP_224147.1| ZINC-DEPENDENT ALCOHOL DEHYDROGENASE [Helicobacter pylori J99]
Length = 365
Score = 22.7 bits (47), Expect = 5.1
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 51 LIEGLKRLKEGCDVAITPDGPKGPRHSIADGVIAL 85
L+ K LK G +VAI PK P+ ++ G + L
Sbjct: 260 LLAYTKLLKYGGEVAIVGIPPKDPQRNLDFGDLVL 294
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 22.7 bits (47), Expect = 5.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 131 IPKEWELSRAKEYLKTRMDSVGFEE 155
I K+W L KEY+ R D +++
Sbjct: 347 ISKKWTLRSGKEYVCVRRDKRKYQK 371
>ref|NP_224205.1| putative [Helicobacter pylori J99]
Length = 198
Score = 22.3 bits (46), Expect = 6.7
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 81 GVIALAQKSGVGISACRVVCKNAWR 105
G + A K G + + C N+WR
Sbjct: 76 GAFSTAHKDGARVGFAKRPCCNSWR 100
>ref|NP_223620.1| putative [Helicobacter pylori J99]
Length = 93
Score = 22.3 bits (46), Expect = 6.7
Identities = 8/31 (25%), Positives = 19/31 (60%)
Query: 118 FSEVYYYMLESVIIPKEWELSRAKEYLKTRM 148
+ E Y Y S+++ ++ ++S K+Y K ++
Sbjct: 30 YVECYKYAASSLLLSQKEQVSGRKDYAKFKL 60
>ref|NP_223519.1| LIPID-A-DISACCHARIDE SYNTHASE [Helicobacter pylori J99]
Length = 360
Score = 22.3 bits (46), Expect = 6.7
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 117 PFSEVYYYMLESVIIPKEWELSRAKEY 143
P ++ YY+L V K+W ++Y
Sbjct: 99 PHKKIMYYILPQVWAWKKWRAKSLEKY 125
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 22.3 bits (46), Expect = 6.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 8 RLQKPSVYVIASQHFDGSIAAGLFESFGFKNIRGSSKKGGVKVLIEGLKRLKEG 61
RL+ + ++ DGS L +F ++ +R ++G V + L + K+G
Sbjct: 484 RLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVFIAQAPLYKYKKG 537
>ref|NP_223005.1| DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN [Helicobacter pylori
J99]
Length = 334
Score = 22.3 bits (46), Expect = 6.7
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 110 DQFEIPKPFSEVYYYMLESVI 130
+QF + KP E Y++ + +V+
Sbjct: 53 EQFGLNKPLIEQYFFFINNVL 73
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 167,237
Number of Sequences: 1491
Number of extensions: 6836
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 14
length of query: 162
length of database: 494,079
effective HSP length: 71
effective length of query: 91
effective length of database: 388,218
effective search space: 35327838
effective search space used: 35327838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)