BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644900|ref|NP_207070.1| hypothetical protein
[Helicobacter pylori 26695]
(177 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222978.1| putative [Helicobacter pylori J99] 345 4e-97
ref|NP_224195.1| putative [Helicobacter pylori J99] 30 0.048
ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99] 25 0.91
ref|NP_223890.1| putative Peptide ABC transporter, ATP-bind... 25 1.2
ref|NP_223806.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROT... 25 1.2
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 25 1.2
ref|NP_223200.1| cag island protein [Helicobacter pylori J99] 25 1.6
ref|NP_222748.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223490.1| putative [Helicobacter pylori J99] 22 7.7
>ref|NP_222978.1| putative [Helicobacter pylori J99]
Length = 177
Score = 345 bits (885), Expect = 4e-97
Identities = 173/177 (97%), Positives = 174/177 (97%)
Query: 1 MRFSYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLY 60
MRFSYIEPRAKYLISKLSKIWVFYIFLSFV+IGGLVWFMHNAIK QDNASSLTIQERLY
Sbjct: 1 MRFSYIEPRAKYLISKLSKIWVFYIFLSFVLIGGLVWFMHNAIKRAQDNASSLTIQERLY 60
Query: 61 RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSITINSIEIDQQSVVV 120
RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPD ITINSIEIDQQSVVV
Sbjct: 61 RHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDLITINSIEIDQQSVVV 120
Query: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177
SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK
Sbjct: 121 SGKTPSKEAFYFLFQNKLNPMFDYSRAEFFPLSDGWFNFVSTNFSNSLLIKNPESIK 177
>ref|NP_224195.1| putative [Helicobacter pylori J99]
Length = 197
Score = 29.6 bits (65), Expect = 0.048
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Query: 23 FYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLYRHEISRLQV--KTDETLKLIKE 80
F++ LSF+ IG + +F+ + +S+ +E + + E+ + D+ L L E
Sbjct: 14 FFVVLSFITIGLVFFFL-------RSQPTSVVSKENIPKIELENFKAFQINDKILDLSIE 66
Query: 81 AKKRLNYND 89
KK L Y+D
Sbjct: 67 GKKALQYDD 75
>ref|NP_223558.1| ACETATE KINASE [Helicobacter pylori J99]
Length = 403
Score = 25.4 bits (54), Expect = 0.91
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 44 KSTQDNASSLTIQERLYRHEISRLQVKTDETLKLIKEAKK 83
K T DN S + +I L++ TDE L++ +AK+
Sbjct: 356 KPTNDNPGSALVNLSQPNTKIQILRIPTDEELEIALQAKE 395
>ref|NP_223890.1| putative Peptide ABC transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 348
Score = 25.0 bits (53), Expect = 1.2
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 4 SYIEPRAKYLISKLSKIWVFYIFLSFVVIGGLVWFMHNAIKSTQDNASSLTIQERLYR 61
+YI R +I L I FL GG + M I +TQ ++ER YR
Sbjct: 3 AYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKERSYR 60
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 25.0 bits (53), Expect = 1.2
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 11 KYLISKLSKIWVFYIFLSFVVIGGLVWFM 39
K L +LS F++ +SFV+I L+WF+
Sbjct: 156 KTLYERLSHYTSFFV-ISFVLIALLIWFL 183
>ref|NP_223562.1| putative FLAGELLAR BASAL-BODY/ROD/HOOKPROTEIN [Helicobacter pylori
J99]
Length = 605
Score = 25.0 bits (53), Expect = 1.2
Identities = 12/42 (28%), Positives = 25/42 (58%)
Query: 57 ERLYRHEISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGL 98
E+L+ + +S LQ+ D T + + K ++ N + +D L+G+
Sbjct: 167 EKLHGNTLSPLQIPQDLTYQPVLSTKVNISVNLNPKDHLKGV 208
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 25.0 bits (53), Expect = 1.2
Identities = 21/103 (20%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 14 ISKLSKIWVFYIFLSFVVIGGLVWFMHNAI--KSTQDNASSLTIQERLYRH--------E 63
+SK+SKI++ +F ++ G+ W + + K + ++A ++ R+ +
Sbjct: 104 LSKVSKIFLALLFFISSMLFGIFWRLPKRLDTKMSLESAHKNELENAFQRYDALGVRFED 163
Query: 64 ISRLQVKTDETLKLIKEAKKRLNYNDDIRDVLQGLLNIVPDSI 106
I+ + +E L++I K Y D + +G+L + P +
Sbjct: 164 IAGVNEVKEELLEVIDYLKNPKKYQDLGIFLPKGVLLVGPPGV 206
>ref|NP_223200.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 24.6 bits (52), Expect = 1.6
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 66 RLQVKTDETLKLIKEAKKRLNYNDDIRDVL 95
+L V TDE + K YND +RD+L
Sbjct: 153 KLFVMTDEEVNFYANLKTIEQYNDYVRDLL 182
>ref|NP_222748.1| putative [Helicobacter pylori J99]
Length = 565
Score = 23.5 bits (49), Expect = 3.5
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 125 PSKEAFYFLFQNKLNPMFD 143
PSKE +F+FQN+ + F+
Sbjct: 244 PSKEVSFFVFQNEPSNSFN 262
>ref|NP_223490.1| putative [Helicobacter pylori J99]
Length = 296
Score = 22.3 bits (46), Expect = 7.7
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 4/28 (14%)
Query: 132 FLFQNKL---NP-MFDYSRAEFFPLSDG 155
FL++ K NP + +YS+ +F+PL +G
Sbjct: 126 FLYKPKRKTKNPKLIEYSQQDFYPLKNG 153
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.138 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,447
Number of Sequences: 1491
Number of extensions: 7386
Number of successful extensions: 29
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 11
length of query: 177
length of database: 494,079
effective HSP length: 72
effective length of query: 105
effective length of database: 386,727
effective search space: 40606335
effective search space used: 40606335
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)