BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644901|ref|NP_207071.1| hypothetical protein
[Helicobacter pylori 26695]
(179 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222979.1| putative [Helicobacter pylori J99] 343 2e-96
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 29 0.084
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 28 0.19
ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR ... 26 0.71
ref|NP_223038.1| putative [Helicobacter pylori J99] 26 0.71
ref|NP_224149.1| putative [Helicobacter pylori J99] 25 0.93
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 0.93
ref|NP_223617.1| putative [Helicobacter pylori J99] 25 0.93
ref|NP_224139.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_223610.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_222774.1| putative [Helicobacter pylori J99] 25 1.2
ref|NP_224097.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223973.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223025.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_222950.1| putative histidine kinase sensor protein [... 25 1.6
ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helic... 24 2.1
ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicoba... 24 2.1
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 24 2.1
ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Hel... 23 3.5
ref|NP_223855.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223515.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 23 3.5
ref|NP_223176.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 4.6
ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99] 23 4.6
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 23 6.0
ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 23 6.0
ref|NP_224044.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223806.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_223734.1| PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE... 22 7.9
ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Heli... 22 7.9
>ref|NP_222979.1| putative [Helicobacter pylori J99]
Length = 179
Score = 343 bits (879), Expect = 2e-96
Identities = 172/179 (96%), Positives = 175/179 (97%)
Query: 1 MKPLHFSHLDREQSGDVGFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60
MKPLHFSHLDREQSGDVGFIIKNL+FLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK
Sbjct: 1 MKPLHFSHLDREQSGDVGFIIKNLIFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKK 60
Query: 61 SVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQN 120
SVLEYAQRHFETAL NYRNQKETSESLLKIFNDEES+RILEKILKKCFDAYKIKPLLSQN
Sbjct: 61 SVLEYAQRHFETALANYRNQKETSESLLKIFNDEESRRILEKILKKCFDAYKIKPLLSQN 120
Query: 121 SLQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDDEGLLVQFGVSIDLQ 179
QKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKD +GLLVQFGVSIDLQ
Sbjct: 121 PSQKTQFFIMARASELEKTYLFFTLINKYLPSAQSQLPLKISKDSDGLLVQFGVSIDLQ 179
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 28.9 bits (63), Expect = 0.084
Identities = 23/105 (21%), Positives = 49/105 (45%), Gaps = 16/105 (15%)
Query: 30 FSLLGWLNTEYFLWPSMLELKKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLK 89
+ ++G E++ W LE++ ++ K + E A+ QKE ++L K
Sbjct: 332 YEIVGLATMEFYQWIQSLEVEPLI------KDLRELAR---------ISAQKELQKALKK 376
Query: 90 IFNDEESKRILEKILKKCFDAYKIKPLLS-QNSLQKTQFFIMARA 133
+ +E + +EKIL F+ + P ++ + + QK + ++ A
Sbjct: 377 RYVPKEYEGNIEKILHNAFNTFLHHPTIALKKNAQKEESDVLVGA 421
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 27.7 bits (60), Expect = 0.19
Identities = 28/108 (25%), Positives = 45/108 (40%), Gaps = 13/108 (12%)
Query: 18 GFIIKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLE-ENRKKSVLEYAQRHFETALTN 76
GF +K L+ L VFS G N + E KK LE E + L Y F++
Sbjct: 13 GFFLKVLLSLVVFSSYGSANDD-------KEAKKEALEKEKNTPNGLVYTNLDFDSFKAT 65
Query: 77 YRNQKETSESLLKIFNDEESKR-----ILEKILKKCFDAYKIKPLLSQ 119
+N K+ + ++ D I+ ++LKK D P++ +
Sbjct: 66 IKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPVIEK 113
>ref|NP_223711.1| PRIMOSOMAL PROTEIN N' (REPLICATION FACTOR Y) [Helicobacter pylori
J99]
Length = 619
Score = 25.8 bits (55), Expect = 0.71
Identities = 11/37 (29%), Positives = 22/37 (58%)
Query: 38 TEYFLWPSMLELKKILLEENRKKSVLEYAQRHFETAL 74
TE F+ P +LE K ++++N + + + +F+T L
Sbjct: 299 TERFITPKLLEALKQVIDKNEQAIIFVPTRANFKTLL 335
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 25.8 bits (55), Expect = 0.71
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 50 KKILLEENRKKSVLEYAQRHFETALTNYRNQ-KETSESLLKIFNDEESKRILEKILKK 106
K+ L +E +K + E A + E L Q + +E LKI + E KR+LE+I K
Sbjct: 30 KRALFKEKSQK-IREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAK 86
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 25.4 bits (54), Expect = 0.93
Identities = 20/92 (21%), Positives = 42/92 (44%), Gaps = 2/92 (2%)
Query: 75 TNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQNSLQKTQFFIMARAS 134
T +K+T+ +++K + +S + I+K+ D +KI +N LQ ++ + + S
Sbjct: 87 TREEPKKQTNCNIIKALKENKSVESIASIVKEYLDYHKITQDFKKN-LQDSKLYEQHKKS 145
Query: 135 ELEKTYLFFTLINKYLPSAQSQLPLKISKDDE 166
++ +Y S + P I DD+
Sbjct: 146 SKNSWVKPVLILVEYSMSDNAN-PAYIKMDDD 176
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.4 bits (54), Expect = 0.93
Identities = 13/49 (26%), Positives = 25/49 (50%)
Query: 54 LEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEK 102
LE KK + AQ+ E L + +QK+ E+ + +D E + + ++
Sbjct: 292 LEITHKKQEIALAQKEKEKHLNDLEDQKQILENKINALSDLEQQYLKDQ 340
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.4 bits (54), Expect = 0.93
Identities = 15/41 (36%), Positives = 24/41 (57%), Gaps = 8/41 (19%)
Query: 99 ILEKILKKCFDAYKIKPLLSQNSLQKTQFFIMARASELEKT 139
++EK+L++ K KP +S N++ KT+ ELEKT
Sbjct: 12 LIEKVLQEQGLQEKAKPFMSDNAVIKTE--------ELEKT 44
>ref|NP_224139.1| putative [Helicobacter pylori J99]
Length = 208
Score = 25.0 bits (53), Expect = 1.2
Identities = 14/62 (22%), Positives = 29/62 (46%)
Query: 49 LKKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCF 108
L+ +L E N K + +YA Y + ++LL + + ++ + ++ + K F
Sbjct: 132 LRVLLSEHNIKNDLAKYAMPESYKTHLAYSINARSLQNLLTLRSSNKALKEMQDLAKALF 191
Query: 109 DA 110
DA
Sbjct: 192 DA 193
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 25.0 bits (53), Expect = 1.2
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 19/109 (17%)
Query: 48 ELKKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKC 107
EL+ + +EE+ K A R E +++ E E L K + LEK+
Sbjct: 89 ELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEMLE------LEKL---- 138
Query: 108 FDAYKIKPLLSQ--NSLQKTQFFIMARASEL-EKT----YLFFTLINKY 149
A +++ L+ ++++TQ I + EL EKT Y F+ I ++
Sbjct: 139 --ALELENLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERIRRW 185
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 25.0 bits (53), Expect = 1.2
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 53 LLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRI--LEKILKKCFDA 110
L +EN+ + H TALTN R+ E + L+ + KR LEK ++ D
Sbjct: 158 LTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRLTD- 216
Query: 111 YKIKPLLS-QNSLQKT 125
K+K L S Q SL+ T
Sbjct: 217 -KLKQLESAQKSLENT 231
Score = 23.1 bits (48), Expect = 4.6
Identities = 35/134 (26%), Positives = 51/134 (37%), Gaps = 18/134 (13%)
Query: 42 LWPSMLELKKILLEENRKKSVLEYAQRHFETA---LTNYRNQKETSESLLKIFNDEESKR 98
LW + +L K E +K +L A LT + + T + LK N E + +
Sbjct: 95 LWQNNNKLTKEKAELKTEKDILAKENTRLLAARDRLTEEKRELTTEKERLKRENTELTHK 154
Query: 99 ILE-----KILKKCFDA--YKIKPLLSQNS--------LQKTQFFIMARASELEKTYLFF 143
I E K L D +++ L ++ LQ F+ R + LEK
Sbjct: 155 ITELTKENKALTTENDKLNHQVTALTNERDSLEQERARLQDAHGFLEKRCTNLEKENQRL 214
Query: 144 TLINKYLPSAQSQL 157
T K L SAQ L
Sbjct: 215 TDKLKQLESAQKSL 228
>ref|NP_224097.1| putative [Helicobacter pylori J99]
Length = 376
Score = 24.6 bits (52), Expect = 1.6
Identities = 15/31 (48%), Positives = 18/31 (57%), Gaps = 2/31 (6%)
Query: 41 FLWPSMLELKKILLEENRKKSVLEYAQRHFE 71
F PSMLE KK+L EE K + + HFE
Sbjct: 77 FFSPSMLEAKKLLKEE--KIYGILHIPSHFE 105
>ref|NP_223973.1| putative [Helicobacter pylori J99]
Length = 253
Score = 24.6 bits (52), Expect = 1.6
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 31/99 (31%)
Query: 60 KSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEE-----------------------S 96
K VL YA++HF +Q S L I ND E S
Sbjct: 23 KKVLNYAKKHF--------SQCHMLSSSLLILNDTECFKKNYLLNWVYHALECAHEKDIS 74
Query: 97 KRILEKILKKCFDAYKIKPLLSQNSLQKTQFFIMARASE 135
LE+IL+K +IK + L+K + ++ +E
Sbjct: 75 MHSLEEILQKSHLPIRIKIMAQNTLLEKIEVKVLTFGAE 113
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 24.6 bits (52), Expect = 1.6
Identities = 16/80 (20%), Positives = 38/80 (47%)
Query: 47 LELKKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKK 106
LE + L++E ++ S + ++ + N ++ L+I +EE++ + EK +
Sbjct: 275 LEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIPKEEETQEVAEKTQVQ 334
Query: 107 CFDAYKIKPLLSQNSLQKTQ 126
+ +I + +Q+TQ
Sbjct: 335 GLEKEEIAETPQEKEIQETQ 354
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 24.6 bits (52), Expect = 1.6
Identities = 14/43 (32%), Positives = 23/43 (52%), Gaps = 1/43 (2%)
Query: 50 KKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFN 92
K +L EN S+ + + E L N+ N+K+ E LL++ N
Sbjct: 27 KGLLENENNVISLENFKPKESEDLLENFSNKKDMQE-LLELLN 68
>ref|NP_222992.1| ATP-DEPENDENT ZINC METALLOPEPTIDASE [Helicobacter pylori J99]
Length = 550
Score = 24.3 bits (51), Expect = 2.1
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Query: 54 LEENRKKSVLEYAQRHFETALTNYRNQKETSESLL----------KIFNDEESKRILEKI 103
L+EN+K+ V Y AL+ Y + E ++ L KI ++ E K ++
Sbjct: 407 LDENQKELVALYQSAK---ALSAYWLEIEFDKASLLGEFIAFNENKIHSESEIKNYIKVY 463
Query: 104 LKKCFDA---YKIKPLLSQNSLQKTQFFIMARASEL 136
L YK + LS+ LQK +F ASEL
Sbjct: 464 LSGTIILELLYKERYSLSKQDLQKAKFLNEFMASEL 499
>ref|NP_222889.1| APOLIPOPROTEIN N-ACYLTRANSFERASE [Helicobacter pylori J99]
Length = 425
Score = 24.3 bits (51), Expect = 2.1
Identities = 16/69 (23%), Positives = 29/69 (41%)
Query: 21 IKNLVFLGVFSLLGWLNTEYFLWPSMLELKKILLEENRKKSVLEYAQRHFETALTNYRNQ 80
+K +GV LLG L+ +F + E+ I L R L++ + N +
Sbjct: 167 LKKYRMIGVLLLLGALDFHFFKISDLKEVGNIELVSTRTPQDLKFDSNYLNNIENNILKE 226
Query: 81 KETSESLLK 89
+ ++S K
Sbjct: 227 IKLAQSKQK 235
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 24.3 bits (51), Expect = 2.1
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 55 EENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYK 112
+EN ++ + AQ++ + KE E + I ++ + +I++K ++K + A K
Sbjct: 174 QENMSENAPKDAQKNNKPLKEEKEETKEKEEETIIIGDNTNAMKIIKKDIQKGYKALK 231
>ref|NP_223858.1| GLYCINAMIDE RIBONUCLEOTIDE SYNTHETASE [Helicobacter pylori J99]
Length = 424
Score = 23.5 bits (49), Expect = 3.5
Identities = 22/71 (30%), Positives = 30/71 (41%), Gaps = 5/71 (7%)
Query: 55 EENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIK 114
E N K L Y Q + N K TS + + EE+ +ILE LK+ + I+
Sbjct: 126 ETNDLKEALNYIQNASFPLVIKALN-KNTSI----VHHQEEALKILEDALKQSNEPVIIE 180
Query: 115 PLLSQNSLQKT 125
P L L T
Sbjct: 181 PFLEGFELSVT 191
>ref|NP_223855.1| putative [Helicobacter pylori J99]
Length = 234
Score = 23.5 bits (49), Expect = 3.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 105 KKCFDAYKIKPLLSQNSLQ 123
K+C D Y + P+L+QN Q
Sbjct: 164 KECQDIYILTPILAQNVAQ 182
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 23.5 bits (49), Expect = 3.5
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 44 PSMLELKKILLEENRKKSVLEYAQRHFETALTNY--RNQKETSE 85
PS E K+ L EE +KK+ E R FE + R++KE E
Sbjct: 489 PSSKEEKRRLKEE-KKKAKAEQRAREFEQRAREHQERDEKELEE 531
>ref|NP_223222.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 312
Score = 23.5 bits (49), Expect = 3.5
Identities = 15/37 (40%), Positives = 20/37 (53%), Gaps = 4/37 (10%)
Query: 70 FETALTNYRNQKETSESLLKIFNDEESKRILEKILKK 106
FE + +N+ E L I DE++K ILEK L K
Sbjct: 7 FENHIKEIQNEIE----LALIRGDEDAKEILEKRLDK 39
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 3.5
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 3/44 (6%)
Query: 44 PSMLELKKILLEENRKKSVLEYAQRHFETALTNY--RNQKETSE 85
PS E K+ L EE +KK+ E R FE + R++KE E
Sbjct: 398 PSSKEEKRRLKEE-KKKAKAEQRAREFEQRAREHQERDEKELEE 440
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 23.1 bits (48), Expect = 4.6
Identities = 21/86 (24%), Positives = 37/86 (42%), Gaps = 2/86 (2%)
Query: 53 LLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFNDEE--SKRILEKILKKCFDA 110
+ E N K V++ + T L + +T +L+KIF D + L+ L
Sbjct: 84 IAERNDLKGVIDSVDFNDNTKLGEGKAMIDTLSNLVKIFADLSLGAHGALDDDLLGDAYE 143
Query: 111 YKIKPLLSQNSLQKTQFFIMARASEL 136
Y ++ S++ K QF+ + S L
Sbjct: 144 YLMRHFASESGKSKGQFYTPSEVSLL 169
>ref|NP_222829.1| DNA TOPOISOMERASE I [Helicobacter pylori J99]
Length = 736
Score = 23.1 bits (48), Expect = 4.6
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 69 HFETALTNYRNQKETSESLLKIFNDEESKRILEKILKKCFDAYKIKPLLSQNSLQKT 125
H E L +Y+ K ++ L+ +E K LEK ++Y I ++ ++ T
Sbjct: 200 HLEAQLISYKGNKLKAQELIDEKKAQEIKNELEK------ESYIISSIIKKSKKSPT 250
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 22.7 bits (47), Expect = 6.0
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 6/99 (6%)
Query: 33 LGWLNTEYFLWPSMLELKKILLEENRKKSVLEYAQRHFETALTNYRNQKETSESLLKIFN 92
L WLN Y S+ EL K LL+ + + L + + +T + L +
Sbjct: 304 LNWLNAHYLKNQSVQELLK-LLKPFSFSDLSHLNPAQLDRLLDALKERSQTLKELALKID 362
Query: 93 DEESKRI--LEKILKKCFDAYKIKPLLS--QNSLQKTQF 127
+ + I EK+ KK A + PLL + +L KT F
Sbjct: 363 EVLTAPIEYEEKVFKKLNQAL-VMPLLEKFKLALDKTDF 400
>ref|NP_223134.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 543
Score = 22.7 bits (47), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 134 SELEKTYLFFTLINKYLP 151
+E EK Y F TL +K LP
Sbjct: 72 NEEEKEYFFLTLSDKKLP 89
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 35 WLNTEYFLWPSMLELKKILLEENRKKSVLEY 65
+LN ++F + L++IL +E ++K ++ Y
Sbjct: 353 FLNDDFFSDKTPKSLQEILKDEEKRKKLIIY 383
>ref|NP_223806.1| putative [Helicobacter pylori J99]
Length = 193
Score = 22.3 bits (46), Expect = 7.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 130 MARASELEKTY-LFFTLINKYLPSAQSQLPLKI 161
+A AS K Y L +NKYL +S +PL I
Sbjct: 87 LALASLWVKRYALLMIFVNKYLYGIKSVVPLAI 119
>ref|NP_223734.1| PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE [Helicobacter pylori
J99]
Length = 209
Score = 22.3 bits (46), Expect = 7.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 81 KETSESLLKIFNDEESKRILEKILKKC 107
+E +E ++K F + + ++K+L+KC
Sbjct: 173 QENNEQVIKRFVKQNNALRVQKVLEKC 199
>ref|NP_223658.1| INTEGRASE/RECOMBINASE (XERCD FAMILY) [Helicobacter pylori J99]
Length = 331
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 6 FSHLDREQSGDVGFIIKNLVF 26
F +LDR++ F +KNL F
Sbjct: 104 FDYLDRKRRYGFDFTLKNLAF 124
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.321 0.138 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,921
Number of Sequences: 1491
Number of extensions: 8515
Number of successful extensions: 65
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 33
length of query: 179
length of database: 494,079
effective HSP length: 72
effective length of query: 107
effective length of database: 386,727
effective search space: 41379789
effective search space used: 41379789
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)