BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644902|ref|NP_207072.1| conserved hypothetical
protein [Helicobacter pylori 26695]
(132 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222980.1| putative [Helicobacter pylori J99] 263 9e-73
ref|NP_223419.1| putative [Helicobacter pylori J99] 32 0.006
ref|NP_223630.1| septum formation protein [Helicobacter pyl... 31 0.013
ref|NP_224076.1| putative amino acid abc transporter, ATP-b... 25 0.94
ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [He... 25 0.94
ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylor... 23 2.7
ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFER... 23 3.6
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 22 4.7
ref|NP_223383.1| putative [Helicobacter pylori J99] 22 6.1
ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobact... 22 8.0
ref|NP_223692.1| putative [Helicobacter pylori J99] 22 8.0
ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter... 22 8.0
>ref|NP_222980.1| putative [Helicobacter pylori J99]
Length = 132
Score = 263 bits (673), Expect = 9e-73
Identities = 125/132 (94%), Positives = 128/132 (96%)
Query: 1 MQDFDFSFNPKACEGCGAKCCVGESGYIFLNIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
M+DFDFSFN KACEGCGAKCCVGESGYIF+ IQEMQQISAFLKLELEEFSQKYVKKVGYK
Sbjct: 1 MRDFDFSFNHKACEGCGAKCCVGESGYIFVTIQEMQQISAFLKLELEEFSQKYVKKVGYK 60
Query: 61 FSLLEKDAKELGLACVFLDLETKKCQIYSVRPKQCQTFPFWEGVKTFSKEQKEAFCQSCP 120
FSLLEKDAK+LGLACVFLDLETKKCQIYS RPKQCQTFPFWE VKTFSKEQKEAFCQSCP
Sbjct: 61 FSLLEKDAKDLGLACVFLDLETKKCQIYSARPKQCQTFPFWESVKTFSKEQKEAFCQSCP 120
Query: 121 GITQKTKETKVR 132
GITQKTKETKVR
Sbjct: 121 GITQKTKETKVR 132
>ref|NP_223419.1| putative [Helicobacter pylori J99]
Length = 117
Score = 32.0 bits (71), Expect = 0.006
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 75 CVFLDLETKKCQIYSVRPKQCQ 96
C FLDLET C+IY RP C+
Sbjct: 52 CKFLDLETNLCKIYESRPLICR 73
>ref|NP_223630.1| septum formation protein [Helicobacter pylori J99]
Length = 493
Score = 30.8 bits (68), Expect = 0.013
Identities = 18/59 (30%), Positives = 29/59 (48%), Gaps = 3/59 (5%)
Query: 31 NIQEMQQISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDLETKKCQIYS 89
NI+ +++I +E+E + + L D +ELG+ACV + ET IYS
Sbjct: 187 NIENLEKIMIQSGVEIENI---VINSYAASIATLSNDERELGVACVDMGGETCNLTIYS 242
>ref|NP_224076.1| putative amino acid abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 261
Score = 24.6 bits (52), Expect = 0.94
Identities = 19/71 (26%), Positives = 32/71 (44%), Gaps = 16/71 (22%)
Query: 35 MQQISAFLKLELEEFSQKYVKKVG--------YKFSLLEKDAKELGLA--------CVFL 78
++Q A+ K +EE S+ ++++VG Y + L K +G+A +FL
Sbjct: 111 LEQYGAYSKKIVEEISKMWIERVGLPPRAYHLYPYELSGGMTKRVGIARAMATNPEILFL 170
Query: 79 DLETKKCQIYS 89
D T YS
Sbjct: 171 DEPTSGLDPYS 181
>ref|NP_222761.1| putative SUGAR NUCLEOTIDE BIOSYNTHESIS [Helicobacter pylori J99]
Length = 310
Score = 24.6 bits (52), Expect = 0.94
Identities = 15/78 (19%), Positives = 36/78 (45%), Gaps = 9/78 (11%)
Query: 31 NIQEM---QQISAFLKLELEEFSQKYVKKVGYKFSLLEKDAKELGLACVFLDLETKKCQI 87
NI +M + + + +EE+ +K + + YK ++ +K +G+ +D+ +K
Sbjct: 227 NIAQMPSVMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDSSKPVGMQQKLMDISKQKALK 286
Query: 88 YSVRPKQCQTFPFWEGVK 105
+ + P +G+K
Sbjct: 287 WELE------IPLEQGIK 298
>ref|NP_223970.1| co-chaperone with DnaK [Helicobacter pylori J99]
Length = 369
Score = 23.1 bits (48), Expect = 2.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 103 GVKTFSKEQKEAFCQSCPGITQKTK 127
G K K Q ++ C+SC G K K
Sbjct: 130 GCKKTIKAQYQSVCESCDGTGAKDK 154
>ref|NP_222986.1| putative LIPID A BIOSYNTHESIS ACYLTRANSFERASE [Helicobacter pylori
J99]
Length = 328
Score = 22.7 bits (47), Expect = 3.6
Identities = 9/27 (33%), Positives = 13/27 (47%)
Query: 95 CQTFPFWEGVKTFSKEQKEAFCQSCPG 121
C F +WE V T + E + + C G
Sbjct: 145 CMHFGYWEAVGTTLAQYYENYGRGCLG 171
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 22.3 bits (46), Expect = 4.7
Identities = 11/37 (29%), Positives = 19/37 (50%), Gaps = 2/37 (5%)
Query: 98 FPFWEGVKTFSKE--QKEAFCQSCPGITQKTKETKVR 132
F W+ + +K+ QK+A Q +T K+T+ R
Sbjct: 118 FNSWKELSKNAKDSAQKQALAQKTEALTHNIKDTRER 154
>ref|NP_223383.1| putative [Helicobacter pylori J99]
Length = 338
Score = 21.9 bits (45), Expect = 6.1
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 27 YIFLNIQEMQQISAFLKLELEEFS-QKYVKKVGYKFSLLEKDAKE-----LGLACVFLDL 80
Y + + +M I+ F F K +KK GY S L+K+ + L +A F+
Sbjct: 217 YPLIPVSQMHGITFFKHSHNALFMVDKILKKKGYVLSFLQKEEIKHHFFSLEIAQKFIIE 276
Query: 81 ETKKCQIYSVRPKQCQTFP 99
+ K+ + +P++ + P
Sbjct: 277 KDKEHVFIAFKPQKTLSMP 295
>ref|NP_223887.1| RIBONUCLEASE II FAMILY PROTEIN [Helicobacter pylori J99]
Length = 644
Score = 21.6 bits (44), Expect = 8.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 90 VRPKQCQTFPFWEGVKTFSKEQ 111
VRPK FPF E S+E+
Sbjct: 450 VRPKNMGFFPFLEHALKISQEK 471
>ref|NP_223692.1| putative [Helicobacter pylori J99]
Length = 196
Score = 21.6 bits (44), Expect = 8.0
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 35 MQQISAFLKLELEEFSQ 51
++ +SA LELEEFS+
Sbjct: 32 LEDLSALAWLELEEFSR 48
>ref|NP_222832.1| PHOSPHOENOLPYRUVATE SYNTHASE [Helicobacter pylori J99]
Length = 812
Score = 21.6 bits (44), Expect = 8.0
Identities = 7/15 (46%), Positives = 9/15 (59%)
Query: 20 CCVGESGYIFLNIQE 34
C GE GY++ I E
Sbjct: 463 CAEGEEGYVYAGIYE 477
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,140
Number of Sequences: 1491
Number of extensions: 6047
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 12
length of query: 132
length of database: 494,079
effective HSP length: 69
effective length of query: 63
effective length of database: 391,200
effective search space: 24645600
effective search space used: 24645600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 44 (21.6 bits)