BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644904|ref|NP_207074.1| hypothetical protein
[Helicobacter pylori 26695]
(185 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222982.1| putative [Helicobacter pylori J99] 344 1e-96
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 28 0.12
ref|NP_224070.1| putative [Helicobacter pylori J99] 27 0.44
ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helic... 26 0.58
ref|NP_223300.1| putative [Helicobacter pylori J99] 26 0.75
ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRA... 25 1.7
ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter p... 23 3.7
ref|NP_224200.1| RIBOFLAVIN SYNTHASE ALPHA CHAIN [Helicobac... 23 6.4
ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori... 23 6.4
ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99] 23 6.4
ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori... 22 8.3
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 22 8.3
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 8.3
ref|NP_222977.1| putative [Helicobacter pylori J99] 22 8.3
>ref|NP_222982.1| putative [Helicobacter pylori J99]
Length = 185
Score = 344 bits (882), Expect = 1e-96
Identities = 171/185 (92%), Positives = 177/185 (95%)
Query: 1 MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLK 60
MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPR+IPQTKDCVF TPDEVLE LLK
Sbjct: 1 MQEIGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRIIPQTKDCVFATPDEVLETLLK 60
Query: 61 ENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLESLVQGS 120
ENT TDCVIVNFKGLYEIGAPSVF+LE+LGLLRRHASSLIVHQD FISHYQLLESLVQGS
Sbjct: 61 ENTRTDCVIVNFKGLYEIGAPSVFDLEILGLLRRHASSLIVHQDPFISHYQLLESLVQGS 120
Query: 121 DGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQNQKR 180
DGV+LDEELLKEDLKGMVEF+WRLGLSVFVETHK DYTHLKDLGVLGVLE PHS NQK+
Sbjct: 121 DGVILDEELLKEDLKGMVEFAWRLGLSVFVETHKPDYTHLKDLGVLGVLENSPHSYNQKK 180
Query: 181 IVFLD 185
IVFLD
Sbjct: 181 IVFLD 185
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 28.5 bits (62), Expect = 0.12
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 52 DEVLEKLLKENTHTDCVIVNFKGLYEIGAPSVFNLEVLGLL------RRHASSLIVHQD- 104
DE+L + K + + FK IG +F+ G++ +R A+S IV Q+
Sbjct: 16 DEILARTEKTGHYNGLKKLEFKERDPIGYEKMFSKLRGGIVHARETAKRIAASPIVEQEG 75
Query: 105 -LFISHYQLLESLVQGSDGVVLDEELLKEDLKGMVEFSW 142
L + Y + V S G+++ + +K MVE +W
Sbjct: 76 ELCFTLYNAVGDSVLTSTGIIIHVRPMGSAIKYMVENNW 114
>ref|NP_224070.1| putative [Helicobacter pylori J99]
Length = 262
Score = 26.6 bits (57), Expect = 0.44
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 93 RRHASSLIVHQDLFISH-YQLLESLVQGSDGVVLDEELLK 131
RR A L++ + I+H + L S+V+ +D V LD+ L+K
Sbjct: 20 RREAEKLVLEGRVKINHEHAKLASVVKENDKVFLDKRLIK 59
>ref|NP_223046.1| putative FLAGELLAR EXPORT APPARATUS [Helicobacter pylori J99]
Length = 258
Score = 26.2 bits (56), Expect = 0.58
Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 4/60 (6%)
Query: 10 LQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVTPDEVLEKLLKENTHTDCVI 69
+QK K + YE KS++ P P+ P + P E LEK EN DC++
Sbjct: 10 IQKDHLNKHDIQKYEF--KSMANLP--PKTNPNSASLETPNPQEPLEKKAIENDLIDCLL 65
>ref|NP_223300.1| putative [Helicobacter pylori J99]
Length = 225
Score = 25.8 bits (55), Expect = 0.75
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 10/62 (16%)
Query: 131 KEDLKGMVEFSWRLGLSVFVE--------THKQDYTHLKDLGVLGVLEKVPHS--QNQKR 180
KED +E + LG + ++ + Q++ KDLGVL ++ K H+ Q +++
Sbjct: 137 KEDFIKSIEHALNLGSNTAIKIVTPLMFLSKAQEFQMAKDLGVLDLIIKETHTCYQGERK 196
Query: 181 IV 182
I+
Sbjct: 197 IL 198
Score = 24.3 bits (51), Expect = 2.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 4 IGILENLQKSLALKEGMLSYEMLGKSLSYNPYLPRVIPQTKDCVFVT 50
+ LEN+ S K S +++G S + N LP ++ +F+T
Sbjct: 64 LDFLENITHSALFKN---SNDLMGHSHAQNKDLPNSFVPNRNAIFIT 107
>ref|NP_224002.1| TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE) [Helicobacter
pylori J99]
Length = 649
Score = 24.6 bits (52), Expect = 1.7
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 120 SDGVVLDEELLKEDLKGMVEFSWRLGLSVFVETHKQDY 157
+ GV LDEE+LK K V+F + + F+ + Q +
Sbjct: 79 NQGVKLDEEILK---KAFVKFKKQGSMDYFIHKNAQGF 113
>ref|NP_223333.1| ASPARTATE AMINOTRANSFERASE [Helicobacter pylori J99]
Length = 390
Score = 23.5 bits (49), Expect = 3.7
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 36 LPRVIPQTKDCVFVTPDEVLEKLLKENTHTDCVIVN 71
L V+ TK V+V DE+ EKL+ + C V+
Sbjct: 188 LGEVLKDTK--VWVLSDEIYEKLVYKGEFVSCAAVS 221
>ref|NP_224200.1| RIBOFLAVIN SYNTHASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 206
Score = 22.7 bits (47), Expect = 6.4
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 17/57 (29%)
Query: 138 VEFSWRLGLSVFVETHKQDYTHLKD----------------LGVLGVLEKVPHSQNQ 178
VE S + SV +E +K D H++ + +GV+EK+ H+ NQ
Sbjct: 53 VELSQKTQNSVALENYK-DLVHIEPALKANASLDGHFVQGHIDAIGVIEKIIHNSNQ 108
>ref|NP_223902.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 22.7 bits (47), Expect = 6.4
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 24 EMLGKSLSYNPYLP 37
E LG++++YN Y+P
Sbjct: 65 EKLGENMTYNEYMP 78
>ref|NP_223267.1| ENDONUCLEASE III [Helicobacter pylori J99]
Length = 218
Score = 22.7 bits (47), Expect = 6.4
Identities = 11/24 (45%), Positives = 14/24 (57%)
Query: 3 EIGILENLQKSLALKEGMLSYEML 26
E G+ ENL +LAL E +S L
Sbjct: 175 EKGVQENLNSALALYENTISLAQL 198
>ref|NP_223901.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 265
Score = 22.3 bits (46), Expect = 8.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 22 SYEMLGKSLSYNPYLPRVI 40
+Y+MLG +PYL R+I
Sbjct: 147 AYDMLGIVFDKHPYLKRLI 165
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 22.3 bits (46), Expect = 8.3
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 80 APSVFNLEVLGLLRRHASSLIVHQDLFISHYQLLES 115
A + N E++G++ + +I DLF S+Y +++
Sbjct: 624 AKIIQNNEIIGVIAKIHPKVIQELDLFESYYAEIDA 659
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 22.3 bits (46), Expect = 8.3
Identities = 12/32 (37%), Positives = 16/32 (49%)
Query: 145 GLSVFVETHKQDYTHLKDLGVLGVLEKVPHSQ 176
G+S F T+K Y LK L + V V + Q
Sbjct: 746 GVSSFFITYKPTYKKLKGLSLNAVFNNVFNQQ 777
>ref|NP_222977.1| putative [Helicobacter pylori J99]
Length = 327
Score = 22.3 bits (46), Expect = 8.3
Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 115 SLVQGSDGVVLDEELLKEDLKGM-----VEFSWRLGLSVFVETHKQDYTHLKD 162
SL++G + L ++L+E L+G+ ++F ++ + + H + HL++
Sbjct: 245 SLIEGMTNIPLIADVLQEGLRGVYHSREIDFVEKVVVLDSCQIHHKALMHLQE 297
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.320 0.140 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,639
Number of Sequences: 1491
Number of extensions: 10186
Number of successful extensions: 41
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 15
length of query: 185
length of database: 494,079
effective HSP length: 72
effective length of query: 113
effective length of database: 386,727
effective search space: 43700151
effective search space used: 43700151
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)