BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644905|ref|NP_207075.1| ferredoxin [Helicobacter
pylori 26695]
(84 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99] 181 3e-48
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 30 0.007
ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helico... 28 0.034
ref|NP_223180.1| putative [Helicobacter pylori J99] 25 0.28
ref|NP_223287.1| putative [Helicobacter pylori J99] 25 0.37
ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 23 0.83
ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylo... 23 1.4
ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helico... 23 1.4
ref|NP_222847.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 22 2.4
ref|NP_223415.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_224073.1| putative motility protein [Helicobacter py... 21 4.1
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 21 4.1
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 21 4.1
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 21 5.4
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 21 5.4
ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99] 21 5.4
ref|NP_223656.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223258.1| putative [Helicobacter pylori J99] 20 7.0
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 20 7.0
ref|NP_223655.1| putative [Helicobacter pylori J99] 20 9.2
ref|NP_223265.1| putative secretion/efflux abc transporter,... 20 9.2
>ref|NP_222983.1| Ferredoxin [Helicobacter pylori J99]
Length = 84
Score = 181 bits (458), Expect = 3e-48
Identities = 82/84 (97%), Positives = 83/84 (98%)
Query: 1 MSLLVNDECIACDACREECPSEAIEEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
MSLLVNDECIACDACREECPSEAIEEGDPIY+IDPDRCTECYGYDDDEPRCVSVCPVDAI
Sbjct: 1 MSLLVNDECIACDACREECPSEAIEEGDPIYSIDPDRCTECYGYDDDEPRCVSVCPVDAI 60
Query: 61 LPDPNNAESKEELKYKYESLKEQD 84
LPDPNNAESKEELKYKYE LKEQD
Sbjct: 61 LPDPNNAESKEELKYKYEILKEQD 84
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 30.4 bits (67), Expect = 0.007
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 7/82 (8%)
Query: 9 CIACDACREECPSEAIEEGDPIYNIDPDRC-----TECYGYDDDEPRC--VSVCPVDAIL 61
CI C C E CP AI G+ N R +E + D C A+
Sbjct: 121 CIYCGLCAEVCPELAIVMGNRFENASTQRSQYGSKSEFLTSEQDAKNCSHAEFLGFGAVS 180
Query: 62 PDPNNAESKEELKYKYESLKEQ 83
P+ N L Y E KE+
Sbjct: 181 PNYNERMQATPLDYVQEPSKEE 202
Score = 28.5 bits (62), Expect = 0.026
Identities = 24/87 (27%), Positives = 34/87 (38%), Gaps = 18/87 (20%)
Query: 6 NDECIACDACREECPSEAI----EEGD------PIYNIDPDRCTECYGYDDDEPRCVSVC 55
++ CI C C + C S I +G+ Y I+ RC C C VC
Sbjct: 79 SERCIGCGLCEKICTSNCIRIITHKGEDNRKKIDSYTINLGRCIYC-------GLCAEVC 131
Query: 56 PVDAILPDPNNAESKEELKYKYESLKE 82
P AI+ N E+ + +Y S E
Sbjct: 132 PELAIVMG-NRFENASTQRSQYGSKSE 157
>ref|NP_223753.1| Pyruvate ferrodoxin oxidoreductase [Helicobacter pylori J99]
Length = 130
Score = 28.1 bits (61), Expect = 0.034
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 6 NDECIACDACREECPSEAI--EEGDPIYNIDPDRCTECYGYDDDEPRCVSVCPVD 58
N+ CI C C CP AI EG + +D C C CV VCP +
Sbjct: 55 NNICINCFNCWVYCPDAAILSREG-KLKGVDYSHCKGC-------GVCVDVCPTN 101
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 25.0 bits (53), Expect = 0.28
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 44 YDDDEPRCVSVCPVDAILPDPNNAESKEELKYKYESLKEQ 83
+D +EP C ++ I+P N + + +L +E++ E+
Sbjct: 435 FDTNEPVDTQKCEIEHIMPQTLNPKWEGDLGENFEAIHEK 474
>ref|NP_223287.1| putative [Helicobacter pylori J99]
Length = 359
Score = 24.6 bits (52), Expect = 0.37
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 57 VDAILPDPNNAESKEELKYKYESLKEQD 84
VDAI +P N SK+++K ++ KE++
Sbjct: 97 VDAIRINPGNIGSKDKIKAVVDACKEKN 124
>ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori
J99]
Length = 113
Score = 23.5 bits (49), Expect = 0.83
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 7 DECIACDACREECPSEAIEEG 27
D C CD C CP+ + G
Sbjct: 17 DRCKGCDICVSVCPAGVLGMG 37
Score = 23.5 bits (49), Expect = 0.83
Identities = 9/22 (40%), Positives = 10/22 (44%)
Query: 7 DECIACDACREECPSEAIEEGD 28
+ CI C C CP AI D
Sbjct: 54 ESCIGCVQCELHCPDFAIYVAD 75
>ref|NP_223861.1| D-LACTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 946
Score = 22.7 bits (47), Expect = 1.4
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 7 DECIACDACREECPSEAIE---EGDPIYNIDPDRCTE--CYGYDDDE 48
D C+ C C CPS+ + + + + +R E +G+D+D+
Sbjct: 544 DMCMECGFCERICPSKDLSLTPRQRIVIHREVERLKERVSHGHDEDQ 590
>ref|NP_223329.1| glycerol-3-phosphate dehydrogenase [Helicobacter pylori J99]
Length = 433
Score = 22.7 bits (47), Expect = 1.4
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 7 DECIACDACREECP 20
+ C C AC E CP
Sbjct: 66 ETCFLCTACVETCP 79
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 22.3 bits (46), Expect = 1.8
Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 28/76 (36%)
Query: 9 CIACDACREECPSEAIEEGD--------PI-------------YNIDPDRCTECYGYDDD 47
CI C C CP G PI Y P+ C+ C
Sbjct: 314 CIRCGTCLNHCPVYDKIGGHAYLSTYPGPIGVVVSPQLFGLNNYGHIPNLCSLC------ 367
Query: 48 EPRCVSVCPVDAILPD 63
RC VCPV+ L +
Sbjct: 368 -GRCTEVCPVEIPLAE 382
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/36 (30%), Positives = 18/36 (49%), Gaps = 4/36 (11%)
Query: 7 DECIACDACREECPSEA-IEEGDPIYNIDPDRCTEC 41
+EC+ C C + CP+ I +G ++ C EC
Sbjct: 247 NECVNCLHCVQVCPTHIDIRKG---LQLECINCLEC 279
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 21.9 bits (45), Expect = 2.4
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 51 CVSVCPVDAILPDPNNAESKEELKY--KYESLKE 82
C SVC DA+ A K + +Y + ++L+E
Sbjct: 423 CASVCAADALSAGRPGARRKSDEEYAKRMQALEE 456
>ref|NP_224073.1| putative motility protein [Helicobacter pylori J99]
Length = 195
Score = 21.2 bits (43), Expect = 4.1
Identities = 13/64 (20%), Positives = 27/64 (41%), Gaps = 2/64 (3%)
Query: 22 EAIEEGDPIYNIDPDRCTECYGYDDDEPRCV--SVCPVDAILPDPNNAESKEELKYKYES 79
+ +E +Y+I+ + ++E + P D + E KE+ K+ YE
Sbjct: 37 QKVEMNHQVYDIETMLADSAFREHEEEQDSSLNTALPEDKTAIEAKEQEQKEKRKHWYEL 96
Query: 80 LKEQ 83
K++
Sbjct: 97 FKKK 100
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 21.2 bits (43), Expect = 4.1
Identities = 9/17 (52%), Positives = 12/17 (69%), Gaps = 2/17 (11%)
Query: 44 YDDDEPRCVSVCPVDAI 60
YD E C++VCPV A+
Sbjct: 204 YDCGE--CIAVCPVGAL 218
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 21.2 bits (43), Expect = 4.1
Identities = 7/16 (43%), Positives = 12/16 (74%)
Query: 68 ESKEELKYKYESLKEQ 83
E KE+ + KY+ ++EQ
Sbjct: 43 EIKEDFELKYQEMREQ 58
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 20.8 bits (42), Expect = 5.4
Identities = 8/30 (26%), Positives = 16/30 (52%)
Query: 15 CREECPSEAIEEGDPIYNIDPDRCTECYGY 44
C+E + +++ + YNI+ D+ E Y
Sbjct: 465 CKESITTIVLDKFNQKYNIECDKLKELKNY 494
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 20.8 bits (42), Expect = 5.4
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 9 CIACDACREECPSEAIEEGD 28
C D RE+CP++ D
Sbjct: 872 CPIADTIREQCPTKIFLRND 891
>ref|NP_222898.1| Fumarate reductase [Helicobacter pylori J99]
Length = 245
Score = 20.8 bits (42), Expect = 5.4
Identities = 6/14 (42%), Positives = 9/14 (63%)
Query: 9 CIACDACREECPSE 22
C++ AC + CP E
Sbjct: 211 CMSLIACHDTCPKE 224
Score = 20.0 bits (40), Expect = 9.2
Identities = 6/13 (46%), Positives = 6/13 (46%)
Query: 7 DECIACDACREEC 19
D CI C C C
Sbjct: 152 DRCIECGCCIASC 164
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 61 LPDPNNAESKEELKYKYESLKEQ 83
L + + E KEEL K + +KE+
Sbjct: 98 LINKEDTEDKEELAKKIKEIKEK 120
>ref|NP_223258.1| putative [Helicobacter pylori J99]
Length = 591
Score = 20.4 bits (41), Expect = 7.0
Identities = 9/21 (42%), Positives = 10/21 (46%)
Query: 18 ECPSEAIEEGDPIYNIDPDRC 38
E P +E G PIY D C
Sbjct: 451 EYPILNVENGVPIYQKDVSSC 471
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 20.4 bits (41), Expect = 7.0
Identities = 11/27 (40%), Positives = 15/27 (54%), Gaps = 2/27 (7%)
Query: 57 VDAILPDPNNAESKEELKYKYESLKEQ 83
VDA PDP E +++ K + KEQ
Sbjct: 133 VDA--PDPKELEEQKKALEKEKEAKEQ 157
>ref|NP_223655.1| putative [Helicobacter pylori J99]
Length = 416
Score = 20.0 bits (40), Expect = 9.2
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 71 EELKYKYESLKE 82
E ++Y YE+LK+
Sbjct: 98 ESIRYNYENLKQ 109
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 20.0 bits (40), Expect = 9.2
Identities = 10/19 (52%), Positives = 12/19 (62%)
Query: 66 NAESKEELKYKYESLKEQD 84
N +KE+LK K E LK D
Sbjct: 447 NNITKEQLKQKREILKSFD 465
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.314 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,344
Number of Sequences: 1491
Number of extensions: 3392
Number of successful extensions: 27
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of query: 84
length of database: 494,079
effective HSP length: 60
effective length of query: 24
effective length of database: 404,619
effective search space: 9710856
effective search space used: 9710856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.0 bits)
S2: 40 (20.0 bits)