BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644915|ref|NP_207085.1| hypothetical protein
[Helicobacter pylori 26695]
(172 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222993.1| putative [Helicobacter pylori J99] 327 8e-92
ref|NP_224110.1| putative [Helicobacter pylori J99] 28 0.13
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 26 0.51
ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter py... 26 0.66
ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 25 1.5
ref|NP_223742.1| 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE... 24 1.9
ref|NP_222867.1| putative [Helicobacter pylori J99] 24 2.5
ref|NP_223389.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_223120.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_222801.1| putative [Helicobacter pylori J99] 23 3.3
ref|NP_222773.1| putative [Helicobacter pylori J99] 23 4.3
ref|NP_224003.1| putative [Helicobacter pylori J99] 23 5.6
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 23 5.6
ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BET... 23 5.6
ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori ... 23 5.6
ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99] 23 5.6
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 22 7.3
ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pyl... 22 7.3
ref|NP_223265.1| putative secretion/efflux abc transporter,... 22 7.3
ref|NP_223788.1| putative [Helicobacter pylori J99] 22 9.6
ref|NP_223787.1| putative [Helicobacter pylori J99] 22 9.6
ref|NP_223650.1| putative [Helicobacter pylori J99] 22 9.6
ref|NP_223501.1| HYDROXYETHYLTHIAZOLE KINASE [Helicobacter ... 22 9.6
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 22 9.6
>ref|NP_222993.1| putative [Helicobacter pylori J99]
Length = 172
Score = 327 bits (839), Expect = 8e-92
Identities = 163/172 (94%), Positives = 168/172 (96%)
Query: 1 MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSPC 60
MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNE+LQQRRI+SLLLFSPC
Sbjct: 1 MRFFSGFGFVNESVLFEEWLLKGAYDVSGFSMGAIKAIEYAYNEVLQQRRIHSLLLFSPC 60
Query: 61 MLAHKSLAFKRLQLSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSD 120
MLAHKSLAFKRLQL FQKDPQSYMDNFY+EVGL AQLERFKKEGSLEELEFLL+YKYSD
Sbjct: 61 MLAHKSLAFKRLQLFLFQKDPQSYMDNFYKEVGLDAQLERFKKEGSLEELEFLLDYKYSD 120
Query: 121 SIIRLLLEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172
SIIR LLEKGVKIEVFIGLKD+ITDIQALLEFFMPLVQVWQFKDCNHLLQKS
Sbjct: 121 SIIRFLLEKGVKIEVFIGLKDRITDIQALLEFFMPLVQVWQFKDCNHLLQKS 172
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 28.1 bits (61), Expect = 0.13
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 127 LEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQ 161
LEKG + E+ +GL K TD ++ + FF+ L + ++
Sbjct: 51 LEKGAEFEIIVGLDFKTTDSKS-IRFFLDLNKTYK 84
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 26.2 bits (56), Expect = 0.51
Identities = 20/70 (28%), Positives = 29/70 (40%), Gaps = 9/70 (12%)
Query: 69 FKRLQLSSFQKDPQSYMDNFYQE---------VGLSAQLERFKKEGSLEELEFLLNYKYS 119
FK L L F P+ DN +GL + KEGS F+ +Y
Sbjct: 407 FKFLHLYKFTTTPKDIKDNTDTSESRLINPSVLGLVFEKLNGYKEGSFYTPSFITSYMCK 466
Query: 120 DSIIRLLLEK 129
+SI ++L+K
Sbjct: 467 ESITTIVLDK 476
Score = 22.3 bits (46), Expect = 7.3
Identities = 11/24 (45%), Positives = 13/24 (53%)
Query: 18 EWLLKGAYDVSGFSMGAIKAIEYA 41
EWLLK VS + A+K E A
Sbjct: 888 EWLLKKTTLVSYMELNALKVFESA 911
>ref|NP_222723.1| TRANSCRIPTION TERMINATION [Helicobacter pylori J99]
Length = 138
Score = 25.8 bits (55), Expect = 0.66
Identities = 16/46 (34%), Positives = 26/46 (55%), Gaps = 10/46 (21%)
Query: 125 LLLEKGVK-------IEVFIGLKDKITDIQALLEFFMPLVQVWQFK 163
+L EK +K + +F G+ +KI +I AL+E P ++ W FK
Sbjct: 32 MLEEKKIKNNQLAFALSLFNGVLEKINEIDALIE---PHLKDWDFK 74
>ref|NP_223461.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 792
Score = 24.6 bits (52), Expect = 1.5
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 25 YDVSGFSMGAIKAIEYAYNEILQQRRIN 52
Y + + G + A +YAYN + +R N
Sbjct: 284 YQYNSYHPGTLSAQDYAYNRFINERPDN 311
>ref|NP_223742.1| 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE [Helicobacter pylori
J99]
Length = 208
Score = 24.3 bits (51), Expect = 1.9
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Query: 120 DSIIRLL-LEKGVKIEVFIGLKDKITDIQALLEFFMPLVQVWQFKDC 165
D II +L + V + V +KD + Q+L+E +P+++V +C
Sbjct: 3 DKIIEILQISPIVPVVVVENIKDAVPLAQSLIEGGIPIIEVTLRSNC 49
>ref|NP_222867.1| putative [Helicobacter pylori J99]
Length = 318
Score = 23.9 bits (50), Expect = 2.5
Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 94 LSAQLERFKKEGSLEELEFLLNYK--------------YSDSIIRLLLEKGVKIEVFIGL 139
L+ Q+ + + E + + F+L+ K + + ++ L +G+++E +
Sbjct: 40 LNRQISKMQAEIKMAKSFFVLDAKGMLMLKPSQFKEQGHKEGLLEHDLTEGIELESHVSF 99
Query: 140 KDKITDIQALLEFFMPLVQVWQFKDCNHLL 169
DK QA+ E L + K NHL+
Sbjct: 100 SDKYYFYQAVNEKRCILTDPYPSKKGNHLV 129
>ref|NP_223389.1| putative [Helicobacter pylori J99]
Length = 439
Score = 23.5 bits (49), Expect = 3.3
Identities = 13/40 (32%), Positives = 22/40 (54%), Gaps = 4/40 (10%)
Query: 102 KKEGSLEELEFLLNYKYSDSIIRLLLEKGVKIEVFIGLKD 141
KKEG++ L+ +Y D I L+ E +++F G+ D
Sbjct: 71 KKEGAILIASGCLSERYKDEIKELIPE----VDIFTGVGD 106
>ref|NP_223120.1| putative [Helicobacter pylori J99]
Length = 416
Score = 23.5 bits (49), Expect = 3.3
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 7/37 (18%)
Query: 135 VFIGLKDKITDIQALLEF-------FMPLVQVWQFKD 164
VF+GLK K + A++ F M +VW ++D
Sbjct: 345 VFLGLKTKRVRLDAMVAFGDYQEYSLMSSFRVWTYRD 381
>ref|NP_222801.1| putative [Helicobacter pylori J99]
Length = 450
Score = 23.5 bits (49), Expect = 3.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 92 VGLSAQLERFKKEGSLEELE 111
+G S +LERF K+ S EELE
Sbjct: 430 LGESFELERFYKDLSPEELE 449
>ref|NP_222773.1| putative [Helicobacter pylori J99]
Length = 120
Score = 23.1 bits (48), Expect = 4.3
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 74 LSSFQKDPQSYMDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSDSIIRLLLE 128
++S D + Y+++FY + +R K L EL LL DS L E
Sbjct: 22 IASVLSDSKYYLESFYNQASQELGDKRSDKGEKLAELFDLLFEYIKDSKFERLKE 76
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 22.7 bits (47), Expect = 5.6
Identities = 13/41 (31%), Positives = 22/41 (52%), Gaps = 1/41 (2%)
Query: 46 LQQRRINSLLLFSPCMLAHKSLAFKRLQLSSFQKDPQSYMD 86
L++ RI L F PC ++ A K Q +SF+ +++ D
Sbjct: 624 LEKTRIEHAL-FVPCYRKEQTNALKISQSASFKMSEKNFKD 663
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 22.7 bits (47), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (58%), Gaps = 2/32 (6%)
Query: 81 PQSY--MDNFYQEVGLSAQLERFKKEGSLEEL 110
P SY + FYQE+GL ++E F ++ E+
Sbjct: 213 PNSYEQVRFFYQELGLLDKIELFAFHNNITEV 244
>ref|NP_223733.1| RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE 1 BETA CHAIN [Helicobacter
pylori J99]
Length = 341
Score = 22.7 bits (47), Expect = 5.6
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 21/78 (26%)
Query: 15 LFEEWLLKGAYDVSGFS-----------MGAIKAIEYAYNE-----ILQQRRINSLL--- 55
LF +L+G Y SGFS +G+ + I + + IL Q IN+L
Sbjct: 178 LFANQILEGIYFYSGFSYFYTLARSGKMLGSAQMIRFIQRDEVTHLILFQNMINALRNER 237
Query: 56 --LFSPCMLAHKSLAFKR 71
LF+P ++ FK+
Sbjct: 238 ADLFTPQLINEVIEMFKK 255
>ref|NP_223171.1| DNA GYRASE SUBUNIT B [Helicobacter pylori J99]
Length = 773
Score = 22.7 bits (47), Expect = 5.6
Identities = 17/46 (36%), Positives = 25/46 (53%), Gaps = 1/46 (2%)
Query: 98 LERFKKEGSLEELEFLLNYKYSDSIIRLLLEKGVKIEVFIGLKDKI 143
LE K+ LE L FL+ K + S+ +LEK + +E GL +I
Sbjct: 586 LELEKRYNLLEVLRFLIETKDALSLDMKVLEKSI-LEKLEGLNYQI 630
>ref|NP_222899.1| Fumarate reductase [Helicobacter pylori J99]
Length = 714
Score = 22.7 bits (47), Expect = 5.6
Identities = 14/29 (48%), Positives = 16/29 (54%), Gaps = 1/29 (3%)
Query: 93 GLSAQLERFKK-EGSLEELEFLLNYKYSD 120
G+ A L KK EG E+L FL K SD
Sbjct: 50 GMQASLANAKKSEGDNEDLHFLDTVKGSD 78
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 22.3 bits (46), Expect = 7.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 84 YMDNFYQEVGLSAQLERFKKEGSLEELEFL 113
Y YQ ++++ KKEG +EE + L
Sbjct: 389 YRGYIYQMRAEDNKIDKLKKEGKVEEAQEL 418
>ref|NP_223871.1| DIHYDROPTEROATE SYNTHASE [Helicobacter pylori J99]
Length = 380
Score = 22.3 bits (46), Expect = 7.3
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 33/99 (33%)
Query: 26 DVSGFSMGAIKAIEYAYNEILQQRRINSLLLFSP-CMLAHKSLAFKRLQLSSFQKDPQSY 84
DVSGF+ +I+ +E A + + P C+L H QK P+
Sbjct: 222 DVSGFN--SIEMLEVARD-------------YQPTCILMHA------------QKTPKDM 254
Query: 85 MDNFYQEVGLSAQLERFKKEGSLEELEFLLNYKYSDSII 123
+N + L +++RF K E+LE L Y D I+
Sbjct: 255 QENVFYH-NLFDEMDRFFK----EKLEVLEKYTLQDIIL 288
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 22.3 bits (46), Expect = 7.3
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 40 YAYNEILQQRRINSLLLFSPCMLAHKSLAFKRLQLSSFQKDPQ 82
Y Y+ + Q+ ++LL HK + K L L++F K Q
Sbjct: 209 YLYSGLDNQKNKDNLLFNFMLNFHHKFIETKELYLNNFVKVAQ 251
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 21.9 bits (45), Expect = 9.6
Identities = 7/18 (38%), Positives = 14/18 (76%)
Query: 27 VSGFSMGAIKAIEYAYNE 44
++G ++G +KA+E Y+E
Sbjct: 411 IAGNAIGQVKALELGYDE 428
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 21.9 bits (45), Expect = 9.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 77 FQKDPQSYMDNFYQEV--GLSAQLERF--KKEGSLEELEFLLNYKYSDSIIRL 125
F+K +SY D YQE + E + K + +LE L+ ++ + ++S +L
Sbjct: 295 FKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKL 347
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 21.9 bits (45), Expect = 9.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 73 QLSSFQKDPQSYMDNFYQEVGLSAQLER 100
+L F KDP + ++ +V L A L +
Sbjct: 181 RLKDFSKDPDKLVSDYLVDVKLDALLNQ 208
>ref|NP_223501.1| HYDROXYETHYLTHIAZOLE KINASE [Helicobacter pylori J99]
Length = 259
Score = 21.9 bits (45), Expect = 9.6
Identities = 12/34 (35%), Positives = 17/34 (49%), Gaps = 3/34 (8%)
Query: 76 SFQKDPQSYMDN---FYQEVGLSAQLERFKKEGS 106
S +KDP M FY++ SAQ + + GS
Sbjct: 199 SLKKDPLDSMVQLCAFYKQAAFSAQKKALENNGS 232
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 21.9 bits (45), Expect = 9.6
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 115 NYKYSDSIIRLLLEKGVKIEVFIGLKDKITDIQALLE 151
N+KY ++++ LEK + V + + K+ LE
Sbjct: 397 NFKYDENLLDFELEKEGVLRVLLNKRGKLIKEYRTLE 433
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.325 0.141 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,529
Number of Sequences: 1491
Number of extensions: 8273
Number of successful extensions: 51
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 25
length of query: 172
length of database: 494,079
effective HSP length: 72
effective length of query: 100
effective length of database: 386,727
effective search space: 38672700
effective search space used: 38672700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)