BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644916|ref|NP_207086.1| hypothetical protein
[Helicobacter pylori 26695]
(157 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222994.1| putative [Helicobacter pylori J99] 298 6e-83
ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROT... 30 0.023
ref|NP_223018.1| putative [Helicobacter pylori J99] 30 0.040
ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylo... 28 0.12
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 27 0.26
ref|NP_223193.1| cag island protein [Helicobacter pylori J99] 25 0.98
ref|NP_223104.1| putative [Helicobacter pylori J99] 25 0.98
ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobact... 25 1.3
ref|NP_224192.1| putative [Helicobacter pylori J99] 24 1.7
ref|NP_223735.1| putative [Helicobacter pylori J99] 24 1.7
ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobact... 24 1.7
ref|NP_223809.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223230.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223173.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 22 6.3
ref|NP_224119.1| putative ferredoxin-like protein [Helicoba... 22 6.3
ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter p... 22 6.3
ref|NP_223824.1| putative transporter [Helicobacter pylori ... 22 6.3
ref|NP_223198.1| cag island protein [Helicobacter pylori J99] 22 6.3
ref|NP_224078.1| putative Outer membrane protein [Helicobac... 22 8.3
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 22 8.3
>ref|NP_222994.1| putative [Helicobacter pylori J99]
Length = 157
Score = 298 bits (762), Expect = 6e-83
Identities = 151/157 (96%), Positives = 153/157 (97%)
Query: 1 MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN 60
MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASS+LPEL+LTPFESGKLMAQIFVRFN
Sbjct: 1 MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSILPELNLTPFESGKLMAQIFVRFN 60
Query: 61 YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAAL 120
YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQK GE AL
Sbjct: 61 YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKVGEVAL 120
Query: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLLGKNVL 157
QSAEFARSHAQSEWLFKELFVLVCALFFWRL GKN L
Sbjct: 121 QSAEFARSHAQSEWLFKELFVLVCALFFWRLFGKNAL 157
>ref|NP_222971.1| putative CYTOCHROME C-TYPE BIOGENESIS PROTEIN [Helicobacter pylori
J99]
Length = 239
Score = 30.4 bits (67), Expect = 0.023
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 16/99 (16%)
Query: 11 LLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVLGAIGFVV 70
LL +L G L L V P++ S + ++ L + GK ++ V ++ +GF
Sbjct: 15 LLTSLLAGILTFLSPCVLPLIPAYMSYISQISLEDIKDGK-AKRVSVFLKSLMFVVGF-- 71
Query: 71 LLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYI 109
SLV+L +G+++ L F F + YI
Sbjct: 72 -------------SLVFLGVGMSMAKLIHSFSFSWVNYI 97
>ref|NP_223018.1| putative [Helicobacter pylori J99]
Length = 381
Score = 29.6 bits (65), Expect = 0.040
Identities = 32/115 (27%), Positives = 50/115 (42%), Gaps = 4/115 (3%)
Query: 1 MKKFGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFN 60
+ +FG V + LL IL GSL + I V L F S + + + +
Sbjct: 16 LARFGYVVLIPLL-ILSGSLTPHQSFQLGIAVLMGYVFGSF-LIQFLSPLMSLESIAKIS 73
Query: 61 YVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFYYTPYILNAQKA 115
+ L A+ F+V ++ I F + + I GVA AL +L PY+ +KA
Sbjct: 74 FGLIALSFLVCYFDSIPFFWLW--IWRFIAGVASSALMILVAPLSLPYVKEHKKA 126
>ref|NP_224165.1| NA(+)/H(+) ANTIPORTER 1 [Helicobacter pylori J99]
Length = 438
Score = 28.1 bits (61), Expect = 0.12
Identities = 14/38 (36%), Positives = 27/38 (70%), Gaps = 1/38 (2%)
Query: 57 VRFNYVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAI 94
++F ++LGA+G VVL+ I++ + + + YL+LGV +
Sbjct: 187 LKFAWLLGALG-VVLVLAILNRLNIRSLIPYLLLGVLL 223
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 26.9 bits (58), Expect = 0.26
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 1 MKKFGLGVYLLLLGILGGSLII------LGAIVAPIVFKASSVLPE--LHLTPFESG--- 49
MKK + + LLLG+ G + P++++ + +LP +HL F G
Sbjct: 1 MKKILITLITLLLGVFMGLQASALTHQEINQAKVPVIYEENHLLPMGFIHLA-FRGGGSL 59
Query: 50 ---------KLMAQIFVRFNYVLGAIGFVVLL 72
KL AQ+ LGA+GF LL
Sbjct: 60 SDKNQLGLAKLFAQVLNEGTKELGAVGFAQLL 91
>ref|NP_223193.1| cag island protein [Helicobacter pylori J99]
Length = 199
Score = 25.0 bits (53), Expect = 0.98
Identities = 23/64 (35%), Positives = 29/64 (44%), Gaps = 8/64 (12%)
Query: 27 VAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVLGAIGFVVLLYEIISFIYYKRSLV 86
VA I +S LP +L PF G +M F +LG F L EI+ I K
Sbjct: 120 VARISDLVASYLPREYLPPFIDGNMMGVAF----QILGIDDFGRKLNEIVQDIGTK---- 171
Query: 87 YLIL 90
Y+IL
Sbjct: 172 YIIL 175
>ref|NP_223104.1| putative [Helicobacter pylori J99]
Length = 429
Score = 25.0 bits (53), Expect = 0.98
Identities = 22/74 (29%), Positives = 29/74 (38%), Gaps = 11/74 (14%)
Query: 81 YKRSLVYLILGVAIGALCLLF-----------VFYYTPYILNAQKAGEAALQSAEFARSH 129
Y + + L A GALCLLF V +Y+ + N + +Q F
Sbjct: 92 YNLFALNMSLTYACGALCLLFSSRLRIKLNQKVLFYSMAVANFINGLLSLVQKIYFNMPR 151
Query: 130 AQSEWLFKELFVLV 143
AQ KE VLV
Sbjct: 152 AQGFSTVKEYVVLV 165
>ref|NP_223938.1| PREPROTEIN TRANSLOCASE SUBUNIT [Helicobacter pylori J99]
Length = 420
Score = 24.6 bits (52), Expect = 1.3
Identities = 17/61 (27%), Positives = 31/61 (49%), Gaps = 2/61 (3%)
Query: 8 VYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVLGAIG 67
+YL L+ + I++ A+ P F ++VL + + K+ AQI++ L A+G
Sbjct: 362 LYLALISTV--PWILVKAMGVPFYFGGTAVLIVVQVAIDTMKKIEAQIYMSKYKTLSAVG 419
Query: 68 F 68
F
Sbjct: 420 F 420
>ref|NP_224192.1| putative [Helicobacter pylori J99]
Length = 147
Score = 24.3 bits (51), Expect = 1.7
Identities = 26/101 (25%), Positives = 38/101 (36%), Gaps = 8/101 (7%)
Query: 4 FGLGVYLLLLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVL 63
FG Y LL ++ +LG + K LP L + +F + L
Sbjct: 17 FGFYFYSLLRDLMPFLPPMLGFLFLFYAKKYDHFLPSL--------SVFGCLFWFESMHL 68
Query: 64 GAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFVFY 104
+G + LL+ I I YK SL + G L V+Y
Sbjct: 69 KTLGVLALLFLIYHQIVYKNSLKFFNDGFLFKTLHAFLVYY 109
>ref|NP_223735.1| putative [Helicobacter pylori J99]
Length = 345
Score = 24.3 bits (51), Expect = 1.7
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 15/64 (23%)
Query: 52 MAQIFVRFNYVLGAIGFVVLLYEIIS---------------FIYYKRSLVYLILGVAIGA 96
++Q+F F VL I +VLL I S F+Y ++ IL + A
Sbjct: 10 VSQVFFSFFLVLFFISSIVLLISIASVTLVIKVSFLDLVQLFLYSLPGTIFFILPITFFA 69
Query: 97 LCLL 100
C L
Sbjct: 70 ACAL 73
Score = 22.7 bits (47), Expect = 4.9
Identities = 9/17 (52%), Positives = 12/17 (69%)
Query: 61 YVLGAIGFVVLLYEIIS 77
YVLGA+G L+ +IS
Sbjct: 299 YVLGAVGVYFLMVHVIS 315
>ref|NP_223716.1| putative ZINC-METALLO PROTEASE [Helicobacter pylori J99]
Length = 407
Score = 24.3 bits (51), Expect = 1.7
Identities = 12/28 (42%), Positives = 20/28 (70%), Gaps = 3/28 (10%)
Query: 13 LGILGGSLIILGAIVA---PIVFKASSV 37
LGI+GG L ++ A++A P+VF+ +V
Sbjct: 287 LGIMGGLLALVFALIAHLPPLVFEGFNV 314
>ref|NP_223809.1| putative [Helicobacter pylori J99]
Length = 386
Score = 23.1 bits (48), Expect = 3.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 77 SFIYYKRSLVYLILGVAIGALCLLFVFYY 105
SF+Y K + ++G+ + LC L + Y
Sbjct: 151 SFLYLKVHAMLYVVGIFLIMLCALTIIIY 179
>ref|NP_223230.1| putative [Helicobacter pylori J99]
Length = 215
Score = 23.1 bits (48), Expect = 3.7
Identities = 9/27 (33%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 6 LGVYLLLLGILGGSLIILGAIVAPIVF 32
LG+++ L+G++GG L++ G + + F
Sbjct: 120 LGLWMPLMGVVGG-LLVAGMTITTLSF 145
>ref|NP_223173.1| putative [Helicobacter pylori J99]
Length = 251
Score = 23.1 bits (48), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 61 YVLGAIGFVVLLYEIISFIYYKRSL 85
+ LGA V LYE+ IYY + L
Sbjct: 81 HFLGANNKVKTLYELSEMIYYAKRL 105
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 22.3 bits (46), Expect = 6.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 46 FESGKLMAQIFVRFNYVLGAIGFVVLLYEIISFIYYKRSLVYLILGVAI 94
F L+ + V +Y L VVL Y F ++ R LV I+G+ I
Sbjct: 8 FFCASLLIFLGVLMSYSLSTYTTVVL-YHYGEFHFFIRQLVSAIMGIII 55
>ref|NP_224119.1| putative ferredoxin-like protein [Helicobacter pylori J99]
Length = 458
Score = 22.3 bits (46), Expect = 6.3
Identities = 17/63 (26%), Positives = 25/63 (38%), Gaps = 10/63 (15%)
Query: 82 KRSLVYLILGVAIGALCLLFVFYYTPYILNAQKAGEAALQSAEFARSH--AQSEWLFKEL 139
+++L L+ + L +LF FY+ A E + H A WLF L
Sbjct: 132 RKALSVLLFAPVVAGLMMLFFFYFI--------APEDFFMYLKNPSDHPIAMGFWLFSAL 183
Query: 140 FVL 142
VL
Sbjct: 184 VVL 186
>ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter pylori J99]
Length = 408
Score = 22.3 bits (46), Expect = 6.3
Identities = 15/55 (27%), Positives = 22/55 (39%), Gaps = 3/55 (5%)
Query: 12 LLGILGGSLIILGAIVAPIVFKASSVLPELHLTPFESGKLMAQIFVRFNYVLGAI 66
L+G+LGGS+ ++G + P H F S + F V G I
Sbjct: 126 LMGLLGGSIALVGGHGTSAAWANFFTQPPYH---FSSSLEVGMACATFGLVSGGI 177
>ref|NP_223824.1| putative transporter [Helicobacter pylori J99]
Length = 443
Score = 22.3 bits (46), Expect = 6.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 88 LILGVAIGALCLLFVFYYTPYILNAQKAG 116
L++G+A+G L + + TP + + K G
Sbjct: 39 LLVGLAVGGAYLTQIIFQTPMGILSDKIG 67
>ref|NP_223198.1| cag island protein [Helicobacter pylori J99]
Length = 218
Score = 22.3 bits (46), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (61%), Gaps = 1/29 (3%)
Query: 77 SFIYYKRSLVYLILGVAIGALCLLFVFYY 105
SF+ Y L +L LG+ +G + +LF Y+
Sbjct: 90 SFLGYIGGLEHL-LGLCMGGIFVLFAIYF 117
>ref|NP_224078.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 231
Score = 21.9 bits (45), Expect = 8.3
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 64 GAIGFVVLLYEIISFIYYKRSLVYLILGVAIGALCLLFV 102
GA G +V+ + +F ++K S+V L ++ G + LF+
Sbjct: 156 GARGALVVYTDKQNFKFFKHSVVSGGLAISGGVMLTLFL 194
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 21.9 bits (45), Expect = 8.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 61 YVLGAIGFVVLLYEIISFIY 80
Y LG++G VV+ +I F Y
Sbjct: 346 YFLGSLGTVVIFTTMIFFAY 365
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.333 0.149 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,331
Number of Sequences: 1491
Number of extensions: 6517
Number of successful extensions: 49
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 25
length of query: 157
length of database: 494,079
effective HSP length: 71
effective length of query: 86
effective length of database: 388,218
effective search space: 33386748
effective search space used: 33386748
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 45 (21.9 bits)