BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644919|ref|NP_207089.1| hypothetical protein
[Helicobacter pylori 26695]
(96 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222997.1| putative [Helicobacter pylori J99] 168 2e-44
ref|NP_222895.1| putative [Helicobacter pylori J99] 29 0.019
ref|NP_223357.1| putative [Helicobacter pylori J99] 25 0.21
ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 25 0.36
ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 24 0.46
ref|NP_222950.1| putative histidine kinase sensor protein [... 24 0.61
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 23 0.79
ref|NP_223650.1| putative [Helicobacter pylori J99] 23 1.0
ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pyl... 22 1.8
ref|NP_223615.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223498.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223252.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_223180.1| putative [Helicobacter pylori J99] 22 2.3
ref|NP_224059.1| putative RIBONUCLEASE P PROTEIN COMPONENT ... 22 3.0
ref|NP_223759.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223159.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223119.1| putative co-chaperone with DnaK [Helicobac... 22 3.0
ref|NP_223015.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicob... 21 3.9
ref|NP_223661.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_223010.1| putative [Helicobacter pylori J99] 21 3.9
ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter py... 21 3.9
ref|NP_223997.1| DNA transfer protein [Helicobacter pylori ... 21 5.1
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 21 5.1
ref|NP_223025.1| putative [Helicobacter pylori J99] 21 5.1
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 20 6.7
ref|NP_223994.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 20 6.7
ref|NP_223621.1| putative cation efflux system protein [Hel... 20 6.7
ref|NP_222848.1| putative [Helicobacter pylori J99] 20 6.7
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 20 8.8
ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter py... 20 8.8
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 20 8.8
ref|NP_223643.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kina... 20 8.8
>ref|NP_222997.1| putative [Helicobacter pylori J99]
Length = 100
Score = 168 bits (426), Expect = 2e-44
Identities = 90/100 (90%), Positives = 90/100 (90%), Gaps = 4/100 (4%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESP----IYCPKREQEIL 56
MQKNLDSLLENLRAEIDALDNELSDLLDKRL IALKIALIKQESP IYCPKREQEIL
Sbjct: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLGIALKIALIKQESPQENPIYCPKREQEIL 60
Query: 57 KRLSQRDFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
KRLSQR FKHLNGEIL FY EVFKISR FQENALKELKK
Sbjct: 61 KRLSQRGFKHLNGEILASFYAEVFKISRNFQENALKELKK 100
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 28.9 bits (63), Expect = 0.019
Identities = 13/39 (33%), Positives = 25/39 (63%)
Query: 7 SLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESP 45
+L E L+A +D + + +++RLE+ LK+ L++ E P
Sbjct: 146 NLFEVLKAILDKISKLSEEEVNERLEVLLKMVLMRLEEP 184
>ref|NP_223357.1| putative [Helicobacter pylori J99]
Length = 342
Score = 25.4 bits (54), Expect = 0.21
Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 15 EIDALDNELSDLLD-KRLEIAL----KIAL-IKQESPIYCPKREQEILKRLSQRDFKHLN 68
E+ LD + S ++D K L+I L K +L + S I P EQ I +++SQ K+LN
Sbjct: 73 ELRFLDPQNSPIMDFKNLKIKLHSLDKSSLTLSIHSQIQSPILEQSIQQKISQIPLKNLN 132
Query: 69 GEILTGFYTEVFKISRKFQENALKE 93
+L F S F NAL E
Sbjct: 133 A-LLEKFKPTRLNCSLTF--NALDE 154
>ref|NP_224191.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 588
Score = 24.6 bits (52), Expect = 0.36
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLL 27
+QK D L EN R I +D E +LL
Sbjct: 239 LQKEADKLFENKRGAILVMDAENGELL 265
>ref|NP_223865.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 345
Score = 24.3 bits (51), Expect = 0.46
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 9 LENLRAEI---DALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEI---LKRLSQR 62
+EN+ ++ LDNE S L + L++A ++ + + ++ + K+ S
Sbjct: 148 IENISIDLIYNTPLDNETS--LKEELKLAKELPINHLSAYALSIEKNTNLEKNAKKPSSV 205
Query: 63 DFKHLNGEILTGFYTEVFKIS 83
DF ++ E+L GF+ + +++S
Sbjct: 206 DFDNVVREVLEGFFFKQYEVS 226
>ref|NP_222950.1| putative histidine kinase sensor protein [Helicobacter pylori
J99]
Length = 381
Score = 23.9 bits (50), Expect = 0.61
Identities = 9/40 (22%), Positives = 22/40 (54%)
Query: 49 PKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISRKFQE 88
PK +++L+ S + E+L F + +K+ ++F++
Sbjct: 44 PKESEDLLENFSNKKDMQELLELLNQFILQSYKVEKEFKD 83
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 23.5 bits (49), Expect = 0.79
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 50 KREQEILKRLSQRDFKHLNGEILTG 74
K ++E+L ++ ++ KHL IL G
Sbjct: 118 KEKKELLNKIEKQKIKHLERFILAG 142
>ref|NP_223650.1| putative [Helicobacter pylori J99]
Length = 267
Score = 23.1 bits (48), Expect = 1.0
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 2/43 (4%)
Query: 3 KNLDSLLENLRAEI--DALDNELSDLLDKRLEIALKIALIKQE 43
K+ D L+ + ++ DAL N++ DL + LE+ + LI ++
Sbjct: 187 KDPDKLVSDYLVDVKLDALLNQIMDLEETALELGVMAQLIHKK 229
>ref|NP_223998.1| REPLICATIVE DNA HELICASE [Helicobacter pylori J99]
Length = 486
Score = 22.3 bits (46), Expect = 1.8
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 7 SLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFKH 66
S ++N+ A ++ + N + + K +A I +E + ++ +IL + + +
Sbjct: 89 SPIDNIEAYVEEIKN--ASIKRKLFTLANTI----REQALESAQKSSDILNAVEREVYAL 142
Query: 67 LNGEILTGF 75
LNG + GF
Sbjct: 143 LNGSTIEGF 151
>ref|NP_223615.1| putative [Helicobacter pylori J99]
Length = 226
Score = 22.3 bits (46), Expect = 1.8
Identities = 9/17 (52%), Positives = 11/17 (63%)
Query: 45 PIYCPKREQEILKRLSQ 61
P YC K E+E+L SQ
Sbjct: 132 PTYCLKGEREVLMGFSQ 148
>ref|NP_223498.1| putative [Helicobacter pylori J99]
Length = 245
Score = 22.3 bits (46), Expect = 1.8
Identities = 17/55 (30%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Query: 21 NELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQ---RDFKHLNGEIL 72
N+L D++ K L A KI + P+ K+ +EIL +++K L E L
Sbjct: 72 NQLGDIVLKNLVPAPKILDALDDLPVIEMKKLKEILSAKDNTPLKEYKELLSEKL 126
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 21.9 bits (45), Expect = 2.3
Identities = 25/97 (25%), Positives = 38/97 (38%), Gaps = 17/97 (17%)
Query: 2 QKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIAL--IKQESPI------------- 46
Q NLD E ID + +++LD +IAL + + +S +
Sbjct: 407 QINLDIAQEYQYIYIDTIHTRYANMLDLDAKIALDLGQKNLSLDSLVHKIQVNTNNNINM 466
Query: 47 --YCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFK 81
Y P QE + D K L+ I G +EVF+
Sbjct: 467 RSYDPNNTQEDPQTNFTLDLKSLHSIIQEGENSEVFR 503
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 21.9 bits (45), Expect = 2.3
Identities = 20/70 (28%), Positives = 31/70 (43%), Gaps = 3/70 (4%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLS 60
+ KNL L EI+ SDL+D L+I L + Y PK+E++ K
Sbjct: 513 LNKNLKDLEPFGEKEIE---KRASDLVDWALKIWTYPILEAETLEEYKPKKEKKEKKEKK 569
Query: 61 QRDFKHLNGE 70
+++ L E
Sbjct: 570 EKEEYKLKKE 579
>ref|NP_224059.1| putative RIBONUCLEASE P PROTEIN COMPONENT [Helicobacter pylori J99]
Length = 161
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/34 (32%), Positives = 17/34 (49%)
Query: 63 DFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
D HL+ L + E+ + + ALK+LKK
Sbjct: 119 DCYHLDFWALEKHFLEMLTSIKDYMNKALKDLKK 152
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 5 LDSLLENLRAEIDALDNELSDLLDKRL 31
L++ EN+++EI L+N+L + + L
Sbjct: 117 LNANAENIKSEIKKLENQLIETTTRLL 143
>ref|NP_223159.1| putative [Helicobacter pylori J99]
Length = 181
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 4/36 (11%)
Query: 5 LDSLLENLRAEIDALDNELSD----LLDKRLEIALK 36
L++ EN+++EI L+N+L + LL++ + ++K
Sbjct: 117 LNANTENIKSEIKKLENQLIEETRMLLEQETQKSVK 152
>ref|NP_223119.1| putative co-chaperone with DnaK [Helicobacter pylori J99]
Length = 288
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/17 (52%), Positives = 13/17 (75%)
Query: 15 EIDALDNELSDLLDKRL 31
+I+ L NEL+ LL+K L
Sbjct: 272 KIETLSNELTALLEKEL 288
>ref|NP_223015.1| putative [Helicobacter pylori J99]
Length = 293
Score = 21.6 bits (44), Expect = 3.0
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 43 ESPIYCPKREQEILKRLSQRDFKHLNGEILTGFYTEVFKISRKFQENALK 92
E+PI +++E + S K L G+ TG+ ++ S E LK
Sbjct: 91 ENPIAMTAKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLK 140
>ref|NP_223921.1| ANTHRANILATE SYNTHASE COMPONENT I [Helicobacter pylori J99]
Length = 500
Score = 21.2 bits (43), Expect = 3.9
Identities = 13/34 (38%), Positives = 16/34 (46%)
Query: 63 DFKHLNGEILTGFYTEVFKISRKFQENALKELKK 96
D K + EIL + E FK + LKEL K
Sbjct: 173 DHKEKSAEILGACFDERFKTEIAKELQDLKELVK 206
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 49 PKREQEILKRLSQRDFKHLN 68
PK+E+EIL+ L+ + + LN
Sbjct: 88 PKKEKEILQPLNANEKQVLN 107
>ref|NP_223010.1| putative [Helicobacter pylori J99]
Length = 184
Score = 21.2 bits (43), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (57%)
Query: 2 QKNLDSLLENLRAEIDALDNELSD 25
Q +L +LLE A +D+L L D
Sbjct: 55 QDSLKTLLEGANASMDSLKVNLGD 78
>ref|NP_222792.1| phosphoglucosamine mutase [Helicobacter pylori J99]
Length = 445
Score = 21.2 bits (43), Expect = 3.9
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 40 IKQESPIYCPKREQEILKRLSQRDFKHL 67
I+++ P+ K +LK L Q + +HL
Sbjct: 380 IQKKPPLESLKGYSALLKELDQLEIRHL 407
>ref|NP_223997.1| DNA transfer protein [Helicobacter pylori J99]
Length = 409
Score = 20.8 bits (42), Expect = 5.1
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Query: 23 LSDLLDKRLEIALKIALIKQESPIYCPKREQEILKRLSQRDFK-HLNGEILT-GFY 76
L LLD L + L I I SP++ L LS R FK +L+ +L+ GF+
Sbjct: 339 LGSLLDNILSMPLTIPTISVSSPLWL-LGAHLFLTILSVRFFKVYLSMNVLSMGFF 393
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 20.8 bits (42), Expect = 5.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 54 EILKRLSQRDFKHLNGEILTGFYTEVFKISRKFQENALK 92
++LK S D HLN L + + S+ +E ALK
Sbjct: 322 KLLKPFSFSDLSHLNPAQLDRLLDALKERSQTLKELALK 360
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 20.8 bits (42), Expect = 5.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 41 KQESPIYCPKREQEILKRLSQRDFKHL 67
K SP+ Q++LK L+Q K L
Sbjct: 456 KTSSPLELRLNLQDLLKSLNQESLKSL 482
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 4 NLDSLLENLRAEIDALDNE 22
NL LE + EID +D E
Sbjct: 614 NLKEYLERMVFEIDPIDEE 632
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/26 (30%), Positives = 16/26 (60%)
Query: 1 MQKNLDSLLENLRAEIDALDNELSDL 26
+QK++D + L +I L+N+ D+
Sbjct: 94 IQKSMDKERDYLEEKIITLENKFKDM 119
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 20.4 bits (41), Expect = 6.7
Identities = 9/26 (34%), Positives = 17/26 (64%)
Query: 2 QKNLDSLLENLRAEIDALDNELSDLL 27
Q + +L E L +DAL+N++++ L
Sbjct: 172 QSTVIALPEGLANTMDALNNDITNAL 197
>ref|NP_223621.1| putative cation efflux system protein [Helicobacter pylori J99]
Length = 1019
Score = 20.4 bits (41), Expect = 6.7
Identities = 8/30 (26%), Positives = 16/30 (52%)
Query: 67 LNGEILTGFYTEVFKISRKFQENALKELKK 96
LNG ++ G++ E+ + +E L K+
Sbjct: 924 LNGVVMIGYFKELLLQGKSVEECVLLGAKR 953
>ref|NP_222848.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.4 bits (41), Expect = 6.7
Identities = 7/12 (58%), Positives = 11/12 (91%)
Query: 22 ELSDLLDKRLEI 33
ELS+ LDK+L++
Sbjct: 110 ELSEFLDKKLQV 121
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.0 bits (40), Expect = 8.8
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 47 YCPKREQEILKRLSQRDFKHLNGEILT 73
+C +R +EI++ + ++ K+ +++T
Sbjct: 430 FCQRRRKEIIEYMIEKYGKYNVAQVIT 456
>ref|NP_224035.1| ISOLEUCYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 920
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 34 ALKIALIKQESPIYCPKREQEILKRLSQRDFKH 66
++K L E Y +EQ+ KR+ R H
Sbjct: 16 SMKGNLSVNEPKTYAKWQEQQAFKRMQNRKDNH 48
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 20.0 bits (40), Expect = 8.8
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 49 PKREQEILKRLSQRD 63
PK+ E++++L+Q+D
Sbjct: 306 PKKLFEVIRKLNQKD 320
>ref|NP_223643.1| putative [Helicobacter pylori J99]
Length = 338
Score = 20.0 bits (40), Expect = 8.8
Identities = 7/26 (26%), Positives = 16/26 (60%)
Query: 20 DNELSDLLDKRLEIALKIALIKQESP 45
D +++ ++D I +++ +KQE P
Sbjct: 9 DEQINGMIDYLQNILMEMGGLKQEPP 34
>ref|NP_223030.1| putative tetraacyldisaccharide-1-P 4'-kinase [Helicobacter pylori
J99]
Length = 312
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 40 IKQESPIYCPKREQEILKRL 59
+KQ S I KRE +LK L
Sbjct: 121 LKQASVIVSEKRELGVLKAL 140
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.318 0.137 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,825
Number of Sequences: 1491
Number of extensions: 4534
Number of successful extensions: 36
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of query: 96
length of database: 494,079
effective HSP length: 72
effective length of query: 24
effective length of database: 386,727
effective search space: 9281448
effective search space used: 9281448
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)