BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644924|ref|NP_207094.1| ribosomal protein L21
(rpl21) [Helicobacter pylori 26695]
(104 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223002.1| 50S RIBOSOMAL PROTEIN L21 [Helicobacter py... 201 5e-54
ref|NP_223121.1| putative [Helicobacter pylori J99] 24 0.77
ref|NP_222730.1| 60kDa chaperone [Helicobacter pylori J99] 22 2.9
ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobact... 22 3.8
ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [... 22 5.0
ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Heli... 21 8.6
ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTE... 21 8.6
ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter p... 21 8.6
>ref|NP_223002.1| 50S RIBOSOMAL PROTEIN L21 [Helicobacter pylori J99]
Length = 104
Score = 201 bits (510), Expect = 5e-54
Identities = 102/104 (98%), Positives = 103/104 (98%)
Query: 1 MSYAIFKHGGKQYKVVEGDIVLLDKMDKEPKALVELVEVLAVSKEGKLSCGKPFVNGAKI 60
MSYAIFKHGGKQYKVVEGDIVLLDKM+KEPKALVELVEVLAVSKEGKLSCGKPFVNGAKI
Sbjct: 1 MSYAIFKHGGKQYKVVEGDIVLLDKMNKEPKALVELVEVLAVSKEGKLSCGKPFVNGAKI 60
Query: 61 EAEVINEGRGKKVITFKKRRRKDSKTKRGFRRDFTRVRITKIVA 104
EAEVINEGR KKVITFKKRRRKDSKTKRGFRRDFTRVRITKIVA
Sbjct: 61 EAEVINEGRSKKVITFKKRRRKDSKTKRGFRRDFTRVRITKIVA 104
>ref|NP_223121.1| putative [Helicobacter pylori J99]
Length = 288
Score = 24.3 bits (51), Expect = 0.77
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 25 KMDKEPKALVELVEVLAVSKEGKLSCGKPFVNGAKIEAEVINEGRGKKVITFKKRR 80
+ D++ ++L++ +++ V K P GAKI+ E E +I+F K++
Sbjct: 95 QFDEDFRSLLKALKIALVEKY-------PLKKGAKIQGEHCFEYEADDIISFYKKK 143
>ref|NP_222730.1| 60kDa chaperone [Helicobacter pylori J99]
Length = 546
Score = 22.3 bits (46), Expect = 2.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 1 MSYAIFKHGGKQYKVVEGDIVLLDKMDKEPKALVELVEVLAVSKEGK 47
++Y+IFK G + I + MDK +A++ ++ + GK
Sbjct: 94 LAYSIFKEGLRNITAGANPIEVKRGMDKAAEAIINELKKASKKVGGK 140
>ref|NP_222856.1| Cytochrome oxidase (CBB3-TYPE) [Helicobacter pylori J99]
Length = 292
Score = 21.9 bits (45), Expect = 3.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 7 KHGGKQYKVVEGDIVLLDKMDKEPKALVELV--EVLAVSK 44
KHG K G++ ++ +K+ KA+ V E+ +V K
Sbjct: 161 KHGSKGMDYPAGEMPAIEMDEKDAKAIASYVMAELSSVKK 200
>ref|NP_223254.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99]
Length = 113
Score = 21.6 bits (44), Expect = 5.0
Identities = 13/30 (43%), Positives = 15/30 (49%)
Query: 42 VSKEGKLSCGKPFVNGAKIEAEVINEGRGK 71
VSKE + K N + E I EGRGK
Sbjct: 84 VSKEAQERSEKVKANKYMLLEETILEGRGK 113
>ref|NP_223918.1| INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE [Helicobacter pylori J99]
Length = 452
Score = 20.8 bits (42), Expect = 8.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 71 KKVITFKKRRRKDSKTKRGFRRDFTRVRITK 101
+K +F +K S +K R+DF + ITK
Sbjct: 42 EKKTSFILEYKKASPSKGLIRKDFDLLEITK 72
>ref|NP_223796.1| putative SIGNAL RECOGNITION PARTICLE PROTEIN [Helicobacter pylori
J99]
Length = 448
Score = 20.8 bits (42), Expect = 8.6
Identities = 18/68 (26%), Positives = 32/68 (46%), Gaps = 13/68 (19%)
Query: 11 KQYKVVEGDIVLLDKMDKEPKALVELV------------EVLAVSKEGKLSCGKPFVNGA 58
+Q KV+ G+ V ++ +E K++ E+ +VL V G+L+ K +
Sbjct: 139 EQLKVL-GEQVGVEVFHEENKSVKEIANNALKRAKEAQFDVLIVDSAGRLAIDKELMQEL 197
Query: 59 KIEAEVIN 66
K EV+N
Sbjct: 198 KEVKEVLN 205
>ref|NP_223478.1| EXCINUCLEASE ABC SUBUNIT C [Helicobacter pylori J99]
Length = 594
Score = 20.8 bits (42), Expect = 8.6
Identities = 15/45 (33%), Positives = 23/45 (50%)
Query: 15 VVEGDIVLLDKMDKEPKALVELVEVLAVSKEGKLSCGKPFVNGAK 59
V++G L+ + K+ VEV+A+SKE + S GAK
Sbjct: 460 VIDGGRAQLNIALEILKSSGSFVEVIAISKEKRDSKAYRSKGGAK 504
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.139 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,794
Number of Sequences: 1491
Number of extensions: 3623
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 494,079
effective HSP length: 65
effective length of query: 39
effective length of database: 397,164
effective search space: 15489396
effective search space used: 15489396
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 42 (20.8 bits)