BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644925|ref|NP_207095.1| ribosomal protein L27
(rpl27) [Helicobacter pylori 26695]
(88 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter py... 174 2e-46
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 25 0.37
ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [H... 24 0.62
ref|NP_224113.1| putative [Helicobacter pylori J99] 23 0.82
ref|NP_222861.1| putative [Helicobacter pylori J99] 22 2.4
ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter... 22 3.1
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 22 3.1
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 21 4.1
ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylo... 21 5.3
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 20 6.9
ref|NP_224044.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223851.1| O-SERINE ACETYLTRANSFERASE [Helicobacter p... 20 6.9
ref|NP_222824.1| putative [Helicobacter pylori J99] 20 6.9
>ref|NP_223003.1| 50S RIBOSOMAL PROTEIN L27 [Helicobacter pylori J99]
Length = 88
Score = 174 bits (442), Expect = 2e-46
Identities = 84/88 (95%), Positives = 87/88 (98%)
Query: 1 MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKDHTLY 60
MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTK+HPGNNVGMGKDHTLY
Sbjct: 1 MAHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKIHPGNNVGMGKDHTLY 60
Query: 61 ALIDGVVKFEHKDRNRKKVSVVSQNFGE 88
ALIDGVVKFEHKDR+RKKVSV+S NFGE
Sbjct: 61 ALIDGVVKFEHKDRSRKKVSVISGNFGE 88
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 24.6 bits (52), Expect = 0.37
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 55 KDHTLYALIDGVVKFEHKDRNRKKVSVVSQN 85
KD + + +DG+V F RN++ + V S++
Sbjct: 2662 KDVAILSEVDGIVSFGKPIRNKEHIIVTSKD 2692
>ref|NP_223226.1| ACETYL-COENZYME A CARBOXYLASE SUBUNIT A [Helicobacter pylori J99]
Length = 247
Score = 23.9 bits (50), Expect = 0.62
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 11 QNNRDSAGRRLGVKKFG----SEFVRAGNIIVRQRGTKMHPGNNVGMGKD 56
+N + G + V KF S+FV A IV+ G + NN G+ +D
Sbjct: 47 KNGLEEKGYKAAVIKFDAASESDFVEAIQTIVQSDGGLSYLVNNAGVVRD 96
>ref|NP_224113.1| putative [Helicobacter pylori J99]
Length = 145
Score = 23.5 bits (49), Expect = 0.82
Identities = 10/24 (41%), Positives = 12/24 (49%)
Query: 24 KKFGSEFVRAGNIIVRQRGTKMHP 47
K FG EF N + QR K+ P
Sbjct: 35 KMFGEEFANKANTGIAQRAIKIMP 58
>ref|NP_222861.1| putative [Helicobacter pylori J99]
Length = 287
Score = 21.9 bits (45), Expect = 2.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 34 GNIIVRQRGTKMHPGNNVGMGKDHTLYALI 63
G +V+++G K+ V + +HT AL+
Sbjct: 83 GPKLVKKKGVKLKKDFRVALSGEHTTNALL 112
>ref|NP_223931.1| RNA POLYMERASE ALPHA SUBUNIT [Helicobacter pylori J99]
Length = 344
Score = 21.6 bits (44), Expect = 3.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 62 LIDGVVKFEHKDRNRKKVSVVSQNFG 87
LI +K K+ NR K+S+ FG
Sbjct: 9 LIPSEIKVLEKEGNRVKISLAPFEFG 34
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 21.6 bits (44), Expect = 3.1
Identities = 8/28 (28%), Positives = 14/28 (49%)
Query: 37 IVRQRGTKMHPGNNVGMGKDHTLYALID 64
+ Q +HP +G G + +Y L+D
Sbjct: 500 VYAQANYTLHPMVTLGAGTRYDVYTLVD 527
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 21.2 bits (43), Expect = 4.1
Identities = 15/55 (27%), Positives = 21/55 (37%), Gaps = 9/55 (16%)
Query: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGSEFVRAGNIIVRQRGTKMHPGNNVGMGKD 56
AH+ T NN +A EF +I + + M+ NV MG D
Sbjct: 17 AHQSMVDVTGNNISNAS---------DEFYSRQRVIAKPQAAYMYGTKNVNMGVD 62
>ref|NP_223737.1| UDP-GLUCOSE 4-EPIMERASE [Helicobacter pylori J99]
Length = 344
Score = 20.8 bits (42), Expect = 5.3
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 50 NVGMGKDHTLYALIDGVVKFEHKD 73
NVG + H++ +I+ V + +KD
Sbjct: 267 NVGYNQGHSVKEVIEKVKEISNKD 290
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 20.4 bits (41), Expect = 6.9
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 57 HTLYALIDGVVKFE-----HKDRNRKKVSV 81
HT Y+L+DG K + K+ K VSV
Sbjct: 13 HTEYSLLDGANKIKILAKRIKELGMKSVSV 42
>ref|NP_224044.1| putative [Helicobacter pylori J99]
Length = 792
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/22 (31%), Positives = 13/22 (58%)
Query: 29 EFVRAGNIIVRQRGTKMHPGNN 50
+ V GN+I ++ ++H NN
Sbjct: 405 DLVARGNLICKKYKDELHKANN 426
>ref|NP_223851.1| O-SERINE ACETYLTRANSFERASE [Helicobacter pylori J99]
Length = 171
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/24 (37%), Positives = 14/24 (57%), Gaps = 2/24 (8%)
Query: 42 GTKMHPGNNVGMGK--DHTLYALI 63
G ++HPG +G G DH + +I
Sbjct: 64 GIEIHPGAKIGRGLFIDHGMGVVI 87
>ref|NP_222824.1| putative [Helicobacter pylori J99]
Length = 266
Score = 20.4 bits (41), Expect = 6.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 67 VKFEHKDRNRKKVSVVSQNFG 87
++FE N K++ S+NFG
Sbjct: 87 LRFEVLKVNEKRLKSASENFG 107
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,142
Number of Sequences: 1491
Number of extensions: 3407
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 494,079
effective HSP length: 64
effective length of query: 24
effective length of database: 398,655
effective search space: 9567720
effective search space used: 9567720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)