BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644933|ref|NP_207103.1| hypothetical protein
[Helicobacter pylori 26695]
(184 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223010.1| putative [Helicobacter pylori J99] 350 1e-98
ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori ... 27 0.26
ref|NP_223191.1| cag island protein, DNA transfer protein [... 27 0.44
ref|NP_223459.1| putative lipopolysaccharide biosynthesis p... 25 1.3
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 1.7
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 25 1.7
ref|NP_223990.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 24 2.2
ref|NP_222847.1| putative [Helicobacter pylori J99] 24 2.2
ref|NP_224048.1| putative [Helicobacter pylori J99] 23 4.8
ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter... 23 6.3
ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRA... 23 6.3
ref|NP_223811.1| putative Outer membrane protein [Helicobac... 23 6.3
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 23 6.3
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 23 6.3
ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-AC... 22 8.2
ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1)... 22 8.2
ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter p... 22 8.2
ref|NP_223055.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_223010.1| putative [Helicobacter pylori J99]
Length = 184
Score = 350 bits (899), Expect = 1e-98
Identities = 179/184 (97%), Positives = 183/184 (99%)
Query: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT
Sbjct: 1 MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT 60
Query: 61 LLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
LLEGA+ASMDSLKVNLGD+ KNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM
Sbjct: 61 LLEGANASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHAGSLTAYVRM 120
Query: 121 NEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
NEKLVKVPMQYTIA+DK+VVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES
Sbjct: 121 NEKLVKVPMQYTIADDKLVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES 180
Query: 181 MIKG 184
MIKG
Sbjct: 181 MIKG 184
>ref|NP_223132.1| polyphosphate kinase [Helicobacter pylori J99]
Length = 675
Score = 27.3 bits (59), Expect = 0.26
Identities = 37/149 (24%), Positives = 58/149 (38%), Gaps = 9/149 (6%)
Query: 36 AKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLG---DELKNKNVKEAFFAL 92
A P S + Y++GK +K L+E AS S+ V L DE N + +A
Sbjct: 358 ASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKA---- 413
Query: 93 FKNTNIKVTFRNVIEGDHAGSLTAYVRMNEKLVKVPMQYTIAEDKIVVKGVLDLLNFGLK 152
+ V + HA L + + +L T + + K D+ F K
Sbjct: 414 LERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAK 473
Query: 153 NELASLAKRCESFHEGLTWSQVEIQFESM 181
NE+A+ + FH LT S E++
Sbjct: 474 NEIAN--DIIKLFHSLLTSSATSNTLETL 500
>ref|NP_223191.1| cag island protein, DNA transfer protein [Helicobacter pylori J99]
Length = 748
Score = 26.6 bits (57), Expect = 0.44
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 64 GASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIEG--DHAGSLTAYVRMN 121
GA +D+L +N+ + N N E F L K K T ++V D+ G +
Sbjct: 597 GAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLG-KYTRQDVSRSIDDNTGKTNTSISNK 655
Query: 122 EKLVKVPMQYTIAEDKIVV 140
E+ + P + D++++
Sbjct: 656 ERFLMTPDELMTMGDELII 674
>ref|NP_223459.1| putative lipopolysaccharide biosynthesis protein [Helicobacter
pylori J99]
Length = 292
Score = 25.0 bits (53), Expect = 1.3
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 85 VKEAFFALFKNTNIKVTFRNVIE--GDHAGSLTAYVRMNEKLVKVPMQYTIAEDKIVVKG 142
+ EA L + +K F+ +E H L Y+R+ + ++ +A+ K VKG
Sbjct: 129 LNEAICILEDDITLKEHFKESLEFCRQHINEL-GYIRL------MHLEENVAKQKTPVKG 181
Query: 143 VLDLLNF 149
V +LNF
Sbjct: 182 VSQILNF 188
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.6 bits (52), Expect = 1.7
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 40 VNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDEL-KNKNVKEAFFALFKN 95
+N S+ K G++++ +T L+G + + SLK L + K K+ KE F L N
Sbjct: 2 LNEEQNSLEEKGGENKNEKETPLKGIHSKIPSLKQALEQTISKIKSSKEFFKQLLHN 58
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 24.6 bits (52), Expect = 1.7
Identities = 30/119 (25%), Positives = 49/119 (40%), Gaps = 13/119 (10%)
Query: 1 MKKMVLVSVLLAGFLQAVNL---------DLSSAKLT-WTAFKTKAKTPVNGSFESITYK 50
MKK +L S++ A V DL+S K T A K +A+ + S ++
Sbjct: 1 MKKFILSSLVFACINTGVEALENDGSKPNDLASPKETPKEAQKNEAQNETSQSNQTPKEM 60
Query: 51 LGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEAFFALFKN---TNIKVTFRNVI 106
KS + + + K+ +GD + +K + A ALF ++ TF N I
Sbjct: 61 KVKSISYVGLSYMSDMLANEIAKIRVGDMVDSKKIDTAVLALFNQGYFKDVYATFENGI 119
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 24.3 bits (51), Expect = 2.2
Identities = 20/69 (28%), Positives = 32/69 (45%), Gaps = 4/69 (5%)
Query: 32 FKTKAKTPVNGSFESITYKLG-KSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEAFF 90
++ KA + F++I + K D ++TLL+ +S N ELKN + K +
Sbjct: 495 WEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLKNVQKQKESGSKNALKELKNLHSK---Y 551
Query: 91 ALFKNTNIK 99
L K N K
Sbjct: 552 KLQKEKNPK 560
Score = 22.3 bits (46), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (46%)
Query: 74 VNLGDELKNKNVKEAFFALFKNTNIKVTFRNVIE 107
+ L L NKN+K FA T + FR +E
Sbjct: 343 LGLKSALDNKNIKLLDFATGTGTFLLEAFRKALE 376
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 24.3 bits (51), Expect = 2.2
Identities = 10/32 (31%), Positives = 16/32 (49%)
Query: 147 LNFGLKNELASLAKRCESFHEGLTWSQVEIQF 178
LNFG++ A + + FH SQ ++F
Sbjct: 1171 LNFGVRTNFAEFKRFAKKFHNQGVISQKSVEF 1202
>ref|NP_222847.1| putative [Helicobacter pylori J99]
Length = 481
Score = 24.3 bits (51), Expect = 2.2
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 6/60 (10%)
Query: 45 ESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVK-EAFFALFKNTNIKVTFR 103
E IT +LG Q L E ++MD+L+ N + LKN+ + E L K +K+ R
Sbjct: 12 EIITDQLGDMQ-----LRENLRSAMDTLRANRKNLLKNRYSEWENLRELGKEVKLKILSR 66
>ref|NP_224048.1| putative [Helicobacter pylori J99]
Length = 187
Score = 23.1 bits (48), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 80 LKNKNVKEAFFALFK 94
LK+ +KEAFF+ FK
Sbjct: 57 LKHNEIKEAFFSPFK 71
>ref|NP_224057.1| BIOPOLYMER TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 133
Score = 22.7 bits (47), Expect = 6.3
Identities = 13/57 (22%), Positives = 26/57 (44%)
Query: 43 SFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDELKNKNVKEAFFALFKNTNIK 99
SFE++ +K+ +L+G S + + D L+ N+K+ + + N K
Sbjct: 76 SFENLKHKVSTLAKDTPIVLQGDKKSNLDNFIKVVDLLQTNNLKQLYILVEDKKNQK 132
>ref|NP_224028.1| TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE [Helicobacter
pylori J99]
Length = 277
Score = 22.7 bits (47), Expect = 6.3
Identities = 17/52 (32%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Query: 15 LQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGAS 66
L +N+D K + FKT + + S + I +G S LK++LEG S
Sbjct: 37 LDYLNID---EKNNASLFKTLLEDAMRVSSKEILLIVGGSSFYLKSILEGLS 85
>ref|NP_223811.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 22.7 bits (47), Expect = 6.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 79 ELKNKNVKEAFFALFKNTN 97
++ N NV AF+ +F+N N
Sbjct: 327 DINNYNVSIAFYKVFQNAN 345
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 22.7 bits (47), Expect = 6.3
Identities = 14/51 (27%), Positives = 24/51 (46%), Gaps = 7/51 (13%)
Query: 54 SQDSLKTLLEGASASMDSLKVNLGDELK-------NKNVKEAFFALFKNTN 97
S++S + +E + D+L +NL +E K + N K F K+ N
Sbjct: 626 SKESKERFIELLKQAKDNLSINLNEEGKVIIQDNMHSNTKMQFMLFDKDAN 676
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 22.7 bits (47), Expect = 6.3
Identities = 13/41 (31%), Positives = 21/41 (50%)
Query: 66 SASMDSLKVNLGDELKNKNVKEAFFALFKNTNIKVTFRNVI 106
+A++D+LK N + K A+ A++ N V NVI
Sbjct: 77 NAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVI 117
>ref|NP_224206.1| putative UNDECAPRENYL-PHOSPHATE-ALPHA-N-
ACETYLGLUCOSAMINYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 22.3 bits (46), Expect = 8.2
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 9 VLLAGFLQAVNLDLS 23
V L+GFL+ +NL LS
Sbjct: 79 VFLSGFLEDINLSLS 93
>ref|NP_223764.1| FLAGELLAR HOOK-ASSOCIATED PROTEIN 1 (HAP1) [Helicobacter pylori
J99]
Length = 606
Score = 22.3 bits (46), Expect = 8.2
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 31 AFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMD----SLKVNLGDELKN---K 83
AFK NGSF+ I Y + + KT+ +M+ ++ N D N
Sbjct: 358 AFKDTNYNIKNGSFDLIAYNTDGKEIARKTIAITPITTMNDIIQAINANTDDNQDNNTEN 417
Query: 84 NVKEAFFALFKNTNIK 99
+ + F A F N K
Sbjct: 418 DFDDYFTASFNNETKK 433
>ref|NP_223262.1| PENICILLIN-BINDING PROTEIN [Helicobacter pylori J99]
Length = 660
Score = 22.3 bits (46), Expect = 8.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 58 LKTLLEGASASMDSLKVNLGDELKNKNVKEAFFAL-FKN 95
L TL E S S++ +NL D+L + + ++ + FKN
Sbjct: 424 LVTLQEALSHSLNLATINLSDQLGFEKIYQSLSDMGFKN 462
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 22.3 bits (46), Expect = 8.2
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 136 DKIVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFESMIKG 184
+ + K LD L LK A K E F+ +T +E FE++I+G
Sbjct: 598 ENVTPKERLDTL-VALKKIQAFYKKERERFNAEITILDLEKSFETIIQG 645
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.316 0.132 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,863
Number of Sequences: 1491
Number of extensions: 7680
Number of successful extensions: 39
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 21
length of query: 184
length of database: 494,079
effective HSP length: 72
effective length of query: 112
effective length of database: 386,727
effective search space: 43313424
effective search space used: 43313424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)