BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644935|ref|NP_207105.1| hypothetical protein
[Helicobacter pylori 26695]
(90 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223012.1| putative [Helicobacter pylori J99] 183 5e-49
ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter p... 27 0.096
ref|NP_223413.1| putative [Helicobacter pylori J99] 24 0.62
ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [He... 23 1.4
ref|NP_223812.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicob... 22 1.8
ref|NP_223457.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANS... 22 1.8
ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter p... 22 2.4
ref|NP_224017.1| putative ribonuclease N [Helicobacter pylo... 22 3.1
ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter... 21 5.2
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 21 5.2
ref|NP_223270.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99] 21 5.2
ref|NP_224077.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223664.1| putative [Helicobacter pylori J99] 20 6.9
ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter... 20 6.9
ref|NP_223125.1| amino acid permease [Helicobacter pylori J99] 20 6.9
ref|NP_223442.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_223421.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_222934.1| putative [Helicobacter pylori J99] 20 9.0
ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter... 20 9.0
>ref|NP_223012.1| putative [Helicobacter pylori J99]
Length = 92
Score = 183 bits (465), Expect = 5e-49
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 3 FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL 62
FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL
Sbjct: 5 FLKKPKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFL 64
Query: 63 NVYKAYKNMQKDYEELAKDPKYTQNKTK 90
NVYKAYKNMQKDYEELAKDPKYTQNKTK
Sbjct: 65 NVYKAYKNMQKDYEELAKDPKYTQNKTK 92
>ref|NP_224117.1| Sodium/Glutamate Symporter [Helicobacter pylori J99]
Length = 408
Score = 26.6 bits (57), Expect = 0.096
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 7 PKYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKK---LTHISWLFWLGVIWGVLASFLN 63
PK + I ++++ + +A+L+G + + + K L W ++GVI SF
Sbjct: 214 PKEQRLITASSFVETLALIAIALLVGTFLSHLMPKSFTLPTFVWCLFVGVILRNALSFFK 273
Query: 64 VYKAY 68
++ +
Sbjct: 274 IHSVF 278
>ref|NP_223413.1| putative [Helicobacter pylori J99]
Length = 437
Score = 23.9 bits (50), Expect = 0.62
Identities = 8/35 (22%), Positives = 21/35 (59%)
Query: 39 LKKLTHISWLFWLGVIWGVLASFLNVYKAYKNMQK 73
+ ++T + W+ L ++ G+ + L +YK ++ Q+
Sbjct: 186 IAQITGVMWIAGLAMVVGLFLAVLTLYKKPRHYQE 220
>ref|NP_224186.1| putative ROD SHAPE-DETERMINING PROTEIN [Helicobacter pylori J99]
Length = 388
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 23 LSMVVAILMGVAIGYGLKKLTHISWLFWLG 52
+ +V+ +MG+ I +GL ++ W LG
Sbjct: 43 IRQLVSAIMGIIIMWGLSRVDPRKWFSRLG 72
>ref|NP_223812.1| putative [Helicobacter pylori J99]
Length = 687
Score = 22.7 bits (47), Expect = 1.4
Identities = 13/57 (22%), Positives = 26/57 (44%)
Query: 20 SLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFLNVYKAYKNMQKDYE 76
SLG+ ++ I++ + +K L H W F+ + +A + +Y + K E
Sbjct: 164 SLGILGIMLIIIAILAMVVVKALAHSPWGFFTIAMTIPIAILMGLYMRFFRPHKILE 220
>ref|NP_223595.1| putative SODIUM/ALANINE SYMPORTER [Helicobacter pylori J99]
Length = 450
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/55 (23%), Positives = 27/55 (48%), Gaps = 1/55 (1%)
Query: 19 LSLGLSMVVAILMGVAIGYGLKKLTHISWLFWLGVIWGVLASFLNVYKAYKNMQK 73
LSLG ++ + ++GVA + + W++ G++ G+ + A K +K
Sbjct: 69 LSLGATVGIGSIVGVATAISIAGPGAVFWMWVTGLV-GMATKYSEGILAVKYREK 122
>ref|NP_223457.1| putative [Helicobacter pylori J99]
Length = 279
Score = 22.3 bits (46), Expect = 1.8
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 5/31 (16%)
Query: 53 VIWGVLASFLNVYKAYKNMQKDYEELAKDPK 83
VIWG+ SFLN N + E L ++PK
Sbjct: 36 VIWGLGCSFLNA-----NSVQLEETLRRNPK 61
>ref|NP_223006.1| DIPEPTIDE TRANSPORT SYSTEM DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING
PROTEIN [Helicobacter pylori J99]
Length = 287
Score = 22.3 bits (46), Expect = 1.8
Identities = 11/38 (28%), Positives = 19/38 (49%)
Query: 51 LGVIWGVLASFLNVYKAYKNMQKDYEELAKDPKYTQNK 88
LGV+ + + +YK + Q +EL DP++ K
Sbjct: 215 LGVVAQIADEVVVMYKGHVVEQASAKELFADPRHPYTK 252
>ref|NP_223596.1| D-Amino acid dehydrogenase [Helicobacter pylori J99]
Length = 410
Score = 21.9 bits (45), Expect = 2.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 40 KKLTHISWLFWLGVIWG 56
K L H + L WLG+ +G
Sbjct: 363 KNLIHATGLGWLGITFG 379
>ref|NP_224017.1| putative ribonuclease N [Helicobacter pylori J99]
Length = 292
Score = 21.6 bits (44), Expect = 3.1
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 47 WLFWLGVIWGVLASFLNVYKAYKNMQKDYEEL 78
W+F+ V W VL Y Y + Y EL
Sbjct: 213 WVFFTSVSWHVLKWAFTYYVLY---NRTYHEL 241
>ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter pylori J99]
Length = 567
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/28 (35%), Positives = 16/28 (56%)
Query: 18 YLSLGLSMVVAILMGVAIGYGLKKLTHI 45
YL+ G+ VA + + YG KKL+ +
Sbjct: 131 YLAAGVPGTVAGMEAMLKKYGTKKLSQL 158
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 20.8 bits (42), Expect = 5.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 40 KKLTHISWLFWLGVIWGVLASFLNVYK 66
K+L + +L LGV+WG A +K
Sbjct: 8 KRLKALIFLASLGVLWGNAAEKTPFFK 34
>ref|NP_223270.1| putative [Helicobacter pylori J99]
Length = 477
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 46 SWLFWLGVIWGVLASFLNVYKAYKN 70
SWLFW+ F N Y +N
Sbjct: 322 SWLFWIQKPAYATGRFGNFYPGQQN 346
>ref|NP_222900.1| Fumarate reductase [Helicobacter pylori J99]
Length = 255
Score = 20.8 bits (42), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 8 KYYKFIEGANYLSLGLSMVVAILMGVAIGYGLKKLTH 44
K KF EG+ +L G +V++ VA G L + H
Sbjct: 60 KVAKFFEGSLFLKAGEPAIVSV---VAAGVILILVAH 93
>ref|NP_224077.1| putative [Helicobacter pylori J99]
Length = 377
Score = 20.4 bits (41), Expect = 6.9
Identities = 7/18 (38%), Positives = 12/18 (65%)
Query: 47 WLFWLGVIWGVLASFLNV 64
W+ +L I+ +L S LN+
Sbjct: 360 WIIFLDAIFSILFSKLNI 377
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 20.4 bits (41), Expect = 6.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 58 LASFLNVYKAYKNMQKDYEELAK 80
LA N Y AY+ ++ + EEL +
Sbjct: 233 LALLNNDYTAYEKLRAEKEELKR 255
>ref|NP_223320.1| putative PROCESSING PROTEASE [Helicobacter pylori J99]
Length = 435
Score = 20.4 bits (41), Expect = 6.9
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 57 VLASFLNVYKAYKNMQKDYEELAKDPKYTQN 87
+ FL Y+ M+ +EL K P +TQN
Sbjct: 109 ITLEFLKEYEDEAIMR--LKELLKSPNFTQN 137
Score = 20.0 bits (40), Expect = 9.0
Identities = 8/22 (36%), Positives = 13/22 (58%)
Query: 23 LSMVVAILMGVAIGYGLKKLTH 44
L ++ +L+GV +G LTH
Sbjct: 5 LITLITLLLGVFMGLQASALTH 26
>ref|NP_223125.1| amino acid permease [Helicobacter pylori J99]
Length = 475
Score = 20.4 bits (41), Expect = 6.9
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 45 ISWLFWLGVIWGVLASFLNV 64
+ W++WLG + V ++ +
Sbjct: 98 VFWMYWLGWVITVALEYIAI 117
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 20.0 bits (40), Expect = 9.0
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 52 GVIWGVLASFLNVY 65
GVI GV+ +F+++Y
Sbjct: 334 GVILGVVLAFISMY 347
>ref|NP_223421.1| putative [Helicobacter pylori J99]
Length = 286
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (62%)
Query: 20 SLGLSMVVAILMGVAIGYGLKK 41
++ L ++ L VA GYG+KK
Sbjct: 105 NMPLPFILGGLALVAAGYGVKK 126
>ref|NP_222934.1| putative [Helicobacter pylori J99]
Length = 385
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 19 LSLGLSMVVAILMGVAIGYGLK 40
+S V IL+GV YGL+
Sbjct: 66 ISAAAGSVALILVGVVKNYGLE 87
>ref|NP_222791.1| LIPOPROTEIN SIGNAL PEPTIDASE [Helicobacter pylori J99]
Length = 163
Score = 20.0 bits (40), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 10 YKFIEGANYLSLGLSMVVAILMGVA 34
+ +EG +Y SL + +V+ GVA
Sbjct: 28 HAILEGFHYESLVIDIVLVFNKGVA 52
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.322 0.139 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,770
Number of Sequences: 1491
Number of extensions: 4750
Number of successful extensions: 23
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of query: 90
length of database: 494,079
effective HSP length: 66
effective length of query: 24
effective length of database: 395,673
effective search space: 9496152
effective search space used: 9496152
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 40 (20.0 bits)