BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644936|ref|NP_207106.1| hypothetical protein
[Helicobacter pylori 26695]
(134 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223013.1| putative [Helicobacter pylori J99] 254 4e-70
ref|NP_224030.1| putative [Helicobacter pylori J99] 26 0.33
ref|NP_223088.1| putative [Helicobacter pylori J99] 26 0.44
ref|NP_223230.1| putative [Helicobacter pylori J99] 25 0.97
ref|NP_223513.1| putative [Helicobacter pylori J99] 23 2.2
ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter p... 23 2.8
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 23 3.7
ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicoba... 23 3.7
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 23 3.7
ref|NP_222859.1| putative [Helicobacter pylori J99] 23 3.7
ref|NP_223135.1| putative [Helicobacter pylori J99] 22 4.8
ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogen... 22 4.8
ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Heli... 22 6.3
ref|NP_223055.1| putative [Helicobacter pylori J99] 22 6.3
ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 22 8.2
ref|NP_223640.1| Component of conjugal plasmid transfer sys... 22 8.2
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 22 8.2
ref|NP_223442.1| putative [Helicobacter pylori J99] 22 8.2
ref|NP_222994.1| putative [Helicobacter pylori J99] 22 8.2
>ref|NP_223013.1| putative [Helicobacter pylori J99]
Length = 134
Score = 254 bits (650), Expect = 4e-70
Identities = 130/134 (97%), Positives = 131/134 (97%)
Query: 1 MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60
MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ
Sbjct: 1 MCQIQCLLILLSINIVSAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGVKKRLDLRKQ 60
Query: 61 NSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL 120
+S EKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILG LLFLHLFNGL FLIGVFVSSL
Sbjct: 61 DSKEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGILGVLLFLHLFNGLPFLIGVFVSSL 120
Query: 121 SSALLRFLNNNGKF 134
SSALLRFLNNNGKF
Sbjct: 121 SSALLRFLNNNGKF 134
>ref|NP_224030.1| putative [Helicobacter pylori J99]
Length = 553
Score = 26.2 bits (56), Expect = 0.33
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
Query: 30 VLNFEGGFLGFFIVALSSYYGV----KKRL 55
+ +F GFLG F++ YYG KKRL
Sbjct: 35 LFSFSKGFLGAFLIGFVVYYGCALIPKKRL 64
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 25.8 bits (55), Expect = 0.44
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 13/58 (22%)
Query: 35 GGFLGFFIVALSSYYGVKKRLDLRKQNSIEKEEKQKFQKFALGLEMSFNVWRLGGYGV 92
G GF +L+SY +DL I+KE ++FALG+ GG GV
Sbjct: 172 GAMKGFKSDSLASYQTASLNIDLLMDKPIDKE-----KRFALGI--------FGGVGV 216
>ref|NP_223230.1| putative [Helicobacter pylori J99]
Length = 215
Score = 24.6 bits (52), Expect = 0.97
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 89 GYGVLLGILGTLLFLHLFNGLIFLI-GVFVSSLSSALLRFL 128
G G+ + ILG L+ L L+ L+ ++ G+ V+ ++ L FL
Sbjct: 106 GLGITIMILGILVLLGLWMPLMGVVGGLLVAGMTITTLSFL 146
>ref|NP_223513.1| putative [Helicobacter pylori J99]
Length = 245
Score = 23.5 bits (49), Expect = 2.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 110 IFLIGVFVSSLSSALLRFLN 129
+FL+G+F+S +S + +F N
Sbjct: 178 LFLMGIFLSKISISYRKFFN 197
>ref|NP_223485.1| ATP synthase F0, subunit a [Helicobacter pylori J99]
Length = 226
Score = 23.1 bits (48), Expect = 2.8
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 12 SINIVSAIIVYFFQAFQGV 30
S +V A+IV+F+ F+G+
Sbjct: 107 SFTLVLALIVFFYYHFEGI 125
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 71 FQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNG 108
+Q AL L + +W++ +G+ G L HL NG
Sbjct: 104 YQAVALALNAAVGMWQVIAFGISCGPGPNLGPEHLENG 141
>ref|NP_223215.1| TRANSCRIPTION TERMINATION FACTOR [Helicobacter pylori J99]
Length = 438
Score = 22.7 bits (47), Expect = 3.7
Identities = 15/49 (30%), Positives = 25/49 (50%), Gaps = 2/49 (4%)
Query: 49 YGVKKRLDLRKQNSIEKEEKQKFQKFALGLEMSFNVWRLGGYGVLLGIL 97
Y +K L++ N ++ E Q+F++ L E+ GGY + GIL
Sbjct: 31 YPTEKLLEIA--NKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGIL 77
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 22.7 bits (47), Expect = 3.7
Identities = 12/38 (31%), Positives = 19/38 (49%)
Query: 71 FQKFALGLEMSFNVWRLGGYGVLLGILGTLLFLHLFNG 108
+Q AL L + +W++ +G+ G L HL NG
Sbjct: 104 YQAVALALNAAVGMWQVIAFGISCGPGPNLGPEHLENG 141
>ref|NP_222859.1| putative [Helicobacter pylori J99]
Length = 193
Score = 22.7 bits (47), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (61%)
Query: 83 NVWRLGGYGVLLGILGTLLFLHLF 106
N W LG VL+ LG ++FL +F
Sbjct: 5 NFWPLGIMSVLIFGLGIVVFLVVF 28
>ref|NP_223135.1| putative [Helicobacter pylori J99]
Length = 631
Score = 22.3 bits (46), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 GFFIVALSSYYGVKKRLDLRKQNSIE 64
GF A +SYYG +K +D S+E
Sbjct: 420 GFKKHAQNSYYGDEKEIDTSSLISVE 445
>ref|NP_222770.1| Proline/pyrroline-5-carboxylate dehydrogenase [Helicobacter pylori
J99]
Length = 1185
Score = 22.3 bits (46), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 51 VKKRLDLRKQNSIEKEEKQKFQKFALGLEM 80
+ KRLD ++E+E+KQ KF + L+M
Sbjct: 197 IVKRLDALYALALEEEKKQGMPKF-INLDM 225
>ref|NP_223285.1| UDP-N-ACETYLMURAMATE--ALANINE LIGASE [Helicobacter pylori J99]
Length = 449
Score = 21.9 bits (45), Expect = 6.3
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 45 LSSYYGVKKRLDLRKQNSI 63
L ++ G+KKR D+ ++N++
Sbjct: 296 LLNFKGIKKRFDILQKNNL 314
>ref|NP_223055.1| putative [Helicobacter pylori J99]
Length = 778
Score = 21.9 bits (45), Expect = 6.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 10 LLSINIVSAIIVYFFQAFQGVLNFEGGFLGF 40
+L I+ + AI +G+L FE FLG+
Sbjct: 63 ILMIDTIKAIAKEKKFILEGLLLFENSFLGY 93
>ref|NP_224168.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 323
Score = 21.6 bits (44), Expect = 8.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 8 LILLSINIVSAIIVYFFQAFQGVLNFEGGFL 38
+I+ +I ++ A+ + FF+ F ++F GG L
Sbjct: 20 VIVSAILVLLALGLLFFKGFSLGIDFAGGSL 50
>ref|NP_223640.1| Component of conjugal plasmid transfer system [Helicobacter pylori
J99]
Length = 511
Score = 21.6 bits (44), Expect = 8.2
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 1 MCQIQCLLILLSINIV---SAIIVYFFQAFQGVLNFEGGFLGFFIVALSSYYGV------ 51
M I+ LLI + N+ ++ +Y + F + F +F V +S+ +
Sbjct: 144 MLVIKPLLIGVDTNLTVVGASGTIYTYYLFS--TTYTSKFQSYFSVFVSNKRSIGKLNIL 201
Query: 52 -KKRLDLRKQNSIEKEEKQKFQK 73
K L+ R+Q + K E F K
Sbjct: 202 SKSELEKREQEXLAKTETDNFNK 224
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 21.6 bits (44), Expect = 8.2
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 115 VFVSSLSSALLRFLNNN 131
+F++S+ ++RF+ NN
Sbjct: 2326 LFINSMGDKMVRFIGNN 2342
>ref|NP_223442.1| putative [Helicobacter pylori J99]
Length = 410
Score = 21.6 bits (44), Expect = 8.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Query: 42 IVALSSYYGVKK 53
IVALSSYY KK
Sbjct: 386 IVALSSYYPSKK 397
>ref|NP_222994.1| putative [Helicobacter pylori J99]
Length = 157
Score = 21.6 bits (44), Expect = 8.2
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 12/46 (26%)
Query: 87 LGGYGVLLGILGTLLFLHLFNGLIFLIGVFVSSL---SSALLRFLN 129
LG Y +LLGILG G + ++G V+ + +S++L LN
Sbjct: 6 LGVYLLLLGILG---------GSLIILGAIVAPIVFKASSILPELN 42
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.332 0.150 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,411
Number of Sequences: 1491
Number of extensions: 7275
Number of successful extensions: 46
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 20
length of query: 134
length of database: 494,079
effective HSP length: 69
effective length of query: 65
effective length of database: 391,200
effective search space: 25428000
effective search space used: 25428000
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 44 (21.6 bits)