BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644664|ref|NP_206833.1| hypothetical protein
[Helicobacter pylori 26695]
(137 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_222749.1| putative [Helicobacter pylori J99] 265 3e-73
ref|NP_223618.1| putative [Helicobacter pylori J99] 27 0.27
ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2... 24 1.3
ref|NP_222951.1| putative [Helicobacter pylori J99] 24 1.7
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 23 3.0
ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter... 23 3.0
ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helic... 23 3.0
ref|NP_223730.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_222990.1| putative [Helicobacter pylori J99] 23 3.0
ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter ... 23 3.9
ref|NP_223330.1| putative [Helicobacter pylori J99] 23 3.9
ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 23 3.9
ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PRO... 23 3.9
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 22 5.1
ref|NP_223021.1| putative [Helicobacter pylori J99] 22 5.1
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 22 6.6
ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter... 22 6.6
ref|NP_222737.1| DNA transfer protein [Helicobacter pylori ... 22 6.6
ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [He... 22 8.6
ref|NP_223372.1| putative [Helicobacter pylori J99] 22 8.6
>ref|NP_222749.1| putative [Helicobacter pylori J99]
Length = 137
Score = 265 bits (678), Expect = 3e-73
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE 60
MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE
Sbjct: 1 MNILFGISDTQECYNAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEE 60
Query: 61 EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS 120
EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS
Sbjct: 61 EKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFIS 120
Query: 121 HQNSLVEQSSIPVVIAK 137
HQNSLVEQSSIPVVIAK
Sbjct: 121 HQNSLVEQSSIPVVIAK 137
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 26.6 bits (57), Expect = 0.27
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 20 AVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKAL-LKQFEDAFKK-- 76
A KL +L R L+ ++ + S DY + +ALEE KA L +K E ++K
Sbjct: 41 AEKLFSALYLKRLKFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKDIEKTYEKLR 100
Query: 77 ENIECE-SVLKSGDLIDVVLDMAKD 100
N+E E S + ++ V++ +D
Sbjct: 101 ANLEEEYSSVAVNSVVKKVIEEVRD 125
>ref|NP_223454.1| MOLYBDOPTERIN CONVERTING FACTOR, SUBUNIT 2 [Helicobacter pylori
J99]
Length = 145
Score = 24.3 bits (51), Expect = 1.3
Identities = 16/62 (25%), Positives = 30/62 (47%)
Query: 53 GQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESN 112
G + L + +ALLK + + ++ + + VLK + VL + +L+GA+ N
Sbjct: 41 GNVQGLSFDIYEALLKTWFEKWRHQPKDLGVVLKMAHSVGDVLIRHSSFLCVLMGANTKN 100
Query: 113 LL 114
L
Sbjct: 101 AL 102
>ref|NP_222951.1| putative [Helicobacter pylori J99]
Length = 105
Score = 23.9 bits (50), Expect = 1.7
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Query: 52 YGQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASES 111
Y ++ EEK KAL + D KE + L L+ +LD A D L +
Sbjct: 12 YNVSKLASEEKLKALAQNKNDKLLKEQTDSFEAL----LLKFMLDSAMKMDNPLYPKAPG 67
Query: 112 NLLY 115
+ +Y
Sbjct: 68 DEIY 71
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 23.1 bits (48), Expect = 3.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 45 SESGMMDYGQTEALEEEKAKALLKQFEDAFKKENIE 80
S+ ++D +ALEEE+ KAL + + EN E
Sbjct: 447 SKQSIVDEAALKALEEERKKALEQAEQGCSIGENKE 482
>ref|NP_223763.1| GAMMA-GLUTAMYLTRANSPEPTIDASE [Helicobacter pylori J99]
Length = 567
Score = 23.1 bits (48), Expect = 3.0
Identities = 13/57 (22%), Positives = 24/57 (41%)
Query: 15 NAIKFAVKLAHSLKEVRFTLLHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFE 71
N + + A +LKE R L S + + G +DY + + ++ L Q +
Sbjct: 168 NGYAISQRQAETLKEARERFLKYSSSKKYFFKKGHLDYQEGDLFVQKDLAKTLNQIK 224
>ref|NP_223744.1| GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE [Helicobacter pylori J99]
Length = 425
Score = 23.1 bits (48), Expect = 3.0
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 100 DYDLLLIGASESNLLYRLFIS 120
D+DL+L GA+ + +LF+S
Sbjct: 3 DFDLVLFGATGDLAMRKLFVS 23
>ref|NP_223730.1| putative [Helicobacter pylori J99]
Length = 182
Score = 23.1 bits (48), Expect = 3.0
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 100 DYDLLL-IGASESNLLYRLF 118
+YD L+ +G E LLYR+F
Sbjct: 101 NYDFLICLGVCEDQLLYRIF 120
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 23.1 bits (48), Expect = 3.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 54 QTEALEEEKAKALLKQFEDAFKKENIECESVLKS 87
Q + LE + A+ +LK F+K++ E S++KS
Sbjct: 186 QAKRLELQGAQNILKTTIGIFQKDSDEAISIVKS 219
>ref|NP_223393.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
Length = 347
Score = 22.7 bits (47), Expect = 3.9
Identities = 10/35 (28%), Positives = 21/35 (59%)
Query: 42 FIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK 76
F+ + +D+ +T+A + + AL +Q ++ FKK
Sbjct: 240 FLDFKQKYLDFSRTKAPKANLSNALEEQLKENFKK 274
>ref|NP_223330.1| putative [Helicobacter pylori J99]
Length = 450
Score = 22.7 bits (47), Expect = 3.9
Identities = 22/97 (22%), Positives = 43/97 (43%), Gaps = 13/97 (13%)
Query: 18 KFAVKLAHSLKEVRFTL-LHVSMEVFIYSESGMMDYGQTEALEEEKAKALLKQFEDAFKK 76
K A L HS + ++ T L+++ +YSES ++A +EK + +
Sbjct: 347 KNAFTLCHSDENIKATKRLYMTATPKVYSES-------SKAKAKEKDNVIYSMDDAQTFG 399
Query: 77 ENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNL 113
E I + ++ + LD+ DY ++++ NL
Sbjct: 400 EEIYTLNFERA-----IALDLLTDYKVIILAVRSENL 431
>ref|NP_223045.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 343
Score = 22.7 bits (47), Expect = 3.9
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 64 KALLKQFEDAFKKENIECESVLKSGDLIDVVL 95
K ++ FED K +N +LK D D+ L
Sbjct: 242 KEMMFTFEDIAKLDNFAIREILKVADKKDLSL 273
>ref|NP_223007.1| DIPEPTIDE TRANSPORT SYSTEM ATP-BINDING PROTEIN [Helicobacter pylori
J99]
Length = 268
Score = 22.7 bits (47), Expect = 3.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 63 AKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQ 122
A+AL+ E + V +++++LD+ K+ L I FISH
Sbjct: 164 ARALILHPSVVICDEPVSALDVSIQAQVLNLLLDLQKEMGLTYI-----------FISHD 212
Query: 123 NSLVEQSSIPVVI 135
+VE S +++
Sbjct: 213 LGVVEHISDKIIV 225
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 22.3 bits (46), Expect = 5.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 59 EEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVL 95
+E+KA +K+FE+ KK I + +K ++D +L
Sbjct: 573 DEKKALNKIKEFEEEVKKRFINEPARMKLLIVVDKLL 609
>ref|NP_223021.1| putative [Helicobacter pylori J99]
Length = 251
Score = 22.3 bits (46), Expect = 5.1
Identities = 12/31 (38%), Positives = 16/31 (50%)
Query: 61 EKAKALLKQFEDAFKKENIECESVLKSGDLI 91
E K LLK+F EN+ +SV G +I
Sbjct: 15 EDMKGLLKKFGQVHHAENVAFKSVDPQGIVI 45
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 21.9 bits (45), Expect = 6.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 54 QTEALEEEKAK-ALLKQFEDAFKKE--NIECESVLKSGDLIDVVLDMAKDYD 102
++E EEK K + K+F +A KK+ NIE ++ L + L ++ ++ D
Sbjct: 918 KSELRPEEKRKISTAKKFFEALKKQGVNIEYKTKLNNDQLSALINEVLNRKD 969
>ref|NP_223131.1| DIHYDROOROTATE DEHYDROGENASE [Helicobacter pylori J99]
Length = 351
Score = 21.9 bits (45), Expect = 6.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 6 GISDTQECYNAIKFAVKL 23
GISD +E Y IK L
Sbjct: 291 GISDAKEAYERIKMGASL 308
>ref|NP_222737.1| DNA transfer protein [Helicobacter pylori J99]
Length = 787
Score = 21.9 bits (45), Expect = 6.6
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 50 MDYGQTEALEEEKAKALLKQFEDAFKKENIECESVLKSGDLIDVVLDMAK 99
+DY Q+ + + +A+L QFE+ EN + VL+S + VL+ K
Sbjct: 96 IDYKQSIQSDSQYLQAILNQFENKEVYEN-QYFLVLESTHSLHGVLEHKK 144
>ref|NP_223919.1| ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE [Helicobacter pylori J99]
Length = 335
Score = 21.6 bits (44), Expect = 8.6
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 67 LKQFEDAFKKENIECESVLKSGDLIDVVLDMAKDYDLLLIGASESNLLYRLFISHQ 122
LK+ + KE+++ +D++ + KD +++ A+ ++LLY +SH+
Sbjct: 258 LKELQIENAKESVQA--------CLDILENKGKDSHTMVVAANVASLLY---LSHR 302
>ref|NP_223372.1| putative [Helicobacter pylori J99]
Length = 133
Score = 21.6 bits (44), Expect = 8.6
Identities = 19/68 (27%), Positives = 29/68 (41%), Gaps = 16/68 (23%)
Query: 32 FTLLHVSMEVFIYSESGMMDY------GQTEALEE----------EKAKALLKQFEDAFK 75
F+L+H E + + M D G E L E EK + +LK+++ A K
Sbjct: 56 FSLMHAYSESVFHYDFYMRDLETCLELGMLECLLEKGIHFVEWGDEKLEKILKKYDLAIK 115
Query: 76 KENIECES 83
I+ ES
Sbjct: 116 VVEIKTES 123
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.360
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132,889
Number of Sequences: 1491
Number of extensions: 5585
Number of successful extensions: 31
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 21
length of query: 137
length of database: 494,079
effective HSP length: 69
effective length of query: 68
effective length of database: 391,200
effective search space: 26601600
effective search space used: 26601600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 44 (21.6 bits)