BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644943|ref|NP_207113.1| virulence associated
protein D (vapD) [Helicobacter pylori 26695]
(94 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223547.1| putative [Helicobacter pylori J99] 45 3e-07
ref|NP_224088.1| putative [Helicobacter pylori J99] 32 0.003
ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99] 31 0.005
ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter py... 25 0.21
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 25 0.21
ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helico... 23 0.80
ref|NP_223995.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_223061.1| putative Outer membrane protein [Helicobac... 23 1.4
ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacte... 23 1.4
ref|NP_223645.1| putative [Helicobacter pylori J99] 22 1.8
ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYL... 22 2.3
ref|NP_223705.1| putative chemotaxis protein [Helicobacter ... 22 3.0
ref|NP_222846.1| putative [Helicobacter pylori J99] 22 3.0
ref|NP_224003.1| putative [Helicobacter pylori J99] 21 4.0
ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacte... 21 4.0
ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pyl... 21 4.0
ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [H... 21 4.0
ref|NP_223560.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223209.1| cag island protein [Helicobacter pylori J99] 21 5.2
ref|NP_222858.1| putative [Helicobacter pylori J99] 21 5.2
ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III ... 20 6.8
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 20 8.8
ref|NP_223661.1| putative [Helicobacter pylori J99] 20 8.8
ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDU... 20 8.8
>ref|NP_223547.1| putative [Helicobacter pylori J99]
Length = 48
Score = 44.7 bits (104), Expect = 3e-07
Identities = 28/45 (62%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 2 YALAFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYV 46
+ +AF LKIEILKK + +A+DDLRQ LE LGFE TQGSVY+
Sbjct: 4 HVIAFGLKIEILKKY--KRTLQAHDDLRQ-LEPLGFENTQGSVYL 45
>ref|NP_224088.1| putative [Helicobacter pylori J99]
Length = 218
Score = 31.6 bits (70), Expect = 0.003
Identities = 20/61 (32%), Positives = 29/61 (46%), Gaps = 5/61 (8%)
Query: 6 FDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLS 65
F L + LK E E Y K Y DL+ E+E + E + +S + L+ A NKL
Sbjct: 15 FALDLNALKTEIKETYLKEYKDLKLEIETINLE-----IPERFSHASILSYELNASNKLK 69
Query: 66 Q 66
+
Sbjct: 70 K 70
>ref|NP_223722.1| FERROCHELATASE [Helicobacter pylori J99]
Length = 335
Score = 30.8 bits (68), Expect = 0.005
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 17 YGEPY-NKAYDDLR-QELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSV 74
Y PY + DL +E+E L F S+Y YS TL+ A N L +E F+ V
Sbjct: 113 YTPPYASMVLQDLALKEIESLVFF----SMYPQYSSTTTLSSFNDAFNALKSLETFRPKV 168
Query: 75 RDIRAF 80
R I F
Sbjct: 169 RVIERF 174
>ref|NP_223536.1| CYSTEINYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 465
Score = 25.4 bits (54), Expect = 0.21
Identities = 19/62 (30%), Positives = 32/62 (50%), Gaps = 3/62 (4%)
Query: 24 AYDDLRQELELLGFEWTQGSVYVNYSKE--NTLAQVYKAINKLSQIEWFKKSVRDIRAFK 81
A+D LR+ LEL G+E + + + N + K+I +LS I + + RD+ A
Sbjct: 45 AFDLLRRTLELSGYEVVLVRNFTDIDDKIINKAFKENKSIQELSSI-YIESYTRDLNALN 103
Query: 82 VE 83
V+
Sbjct: 104 VK 105
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 25.4 bits (54), Expect = 0.21
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 9/57 (15%)
Query: 17 YGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKS 73
YG PYN Y D R +L G + G +V ++ + A+VY ++WF S
Sbjct: 35 YG-PYNSNYSDWRHGNDLYGLNFKLG--FVGFANKWFGARVY------GFLDWFNTS 82
>ref|NP_223612.1| GLYCYL-TRNA SYNTHETASE ALPHA CHAIN [Helicobacter pylori J99]
Length = 298
Score = 23.5 bits (49), Expect = 0.80
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 44 VYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAFKVEDFSDF 88
V + Y E V K N L +IEW KK +R +V S++
Sbjct: 156 VEITYGLERLTMYVQKVENIL-EIEWAKKDNESVRYAQVHLESEY 199
>ref|NP_223995.1| putative [Helicobacter pylori J99]
Length = 183
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/62 (22%), Positives = 30/62 (47%), Gaps = 3/62 (4%)
Query: 33 ELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAFKVEDFSDFTEIV 92
+ LGFE +++S E +++ +++ L + +W D VE +D E++
Sbjct: 28 QALGFETRLVQCDLSFSYERFISKTKRSLAVLEEFDWLNSGF-DFSRLNVE--NDTLELL 84
Query: 93 KS 94
K+
Sbjct: 85 KA 86
>ref|NP_223061.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 22.7 bits (47), Expect = 1.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 5 AFDLKIEILKKEYGE-PYNKAYDDLRQEL---ELLGFEWTQGSVYVNY 48
AFD KIE+L + + + +NK D+ + + E QG++Y ++
Sbjct: 26 AFDYKIEVLAESFSKVGFNKKKIDIARGIYPTETFVTAVGQGNIYADF 73
>ref|NP_222841.1| L-SERINE/L-THREONINEDEAMINASE [Helicobacter pylori J99]
Length = 455
Score = 22.7 bits (47), Expect = 1.4
Identities = 15/53 (28%), Positives = 25/53 (46%)
Query: 5 AFDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQV 57
AF+ K E+LK+E + +EL+ L E SV ++S L ++
Sbjct: 130 AFNAKNEVLKEETYYSVGGGFVYTEKELDNLSEEGENESVAYDFSSAKELLEL 182
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 22.3 bits (46), Expect = 1.8
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 20/69 (28%)
Query: 1 MYALAFDLKIEILKK---EYGEPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQV 57
MY L L ++LK+ E+ + + K Y ++ + EL +T AQ
Sbjct: 1591 MYHLQRYLTPDVLKERGLEFFDDWAKTYGEVVNDFEL-----------------DTSAQS 1633
Query: 58 YKAINKLSQ 66
YK +N+ S+
Sbjct: 1634 YKMVNRFSK 1642
Score = 20.8 bits (42), Expect = 5.2
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 44 VYVNYSKENTLAQVYKAINKLSQIEWFKKSVRDIRAF 80
+Y +YS+ L Q+Y S ++ + S ++ F
Sbjct: 1299 IYKDYSRRTHLEQIYNDTFNNSVLKTYDGSQLELEGF 1335
>ref|NP_222805.1| MALONYL COA-ACYL CARRIER PROTEIN TRANSACYLASE [Helicobacter pylori
J99]
Length = 309
Score = 21.9 bits (45), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 22 NKAYDDLRQELELLGFEWTQGSVYVNYSKEN 52
N+AY + + +ELL + TQ Y + K N
Sbjct: 231 NEAYHNKSKAVELLSLQLTQPVRYQDCVKSN 261
>ref|NP_223705.1| putative chemotaxis protein [Helicobacter pylori J99]
Length = 312
Score = 21.6 bits (44), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 7/27 (25%)
Query: 9 KIEILKKEYGEPYNKAYDDLRQELELL 35
K+E+L K+YG DDLR+ L+ +
Sbjct: 220 KLEMLFKKYG-------DDLRKHLKFI 239
>ref|NP_222846.1| putative [Helicobacter pylori J99]
Length = 211
Score = 21.6 bits (44), Expect = 3.0
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 1 MYALAFDLKIEILKKEYGEPYNKAYDDLRQEL 32
+++ +L E K +PY+K + +R+EL
Sbjct: 77 LHSTDLNLNFEAFKDFTLQPYDKEIEAMREEL 108
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 6 FDLKIEILKKEYGEPYNKAYDDLRQELELLGFEWTQG 42
F +++ + ++KA DDL +EL+ F ++ G
Sbjct: 373 FKTLARVIENDDESDFSKAKDDLLEELKNPEFLFSDG 409
>ref|NP_223884.1| SINGLE-STRAND BINDING PROTEIN [Helicobacter pylori J99]
Length = 181
Score = 21.2 bits (43), Expect = 4.0
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 19 EPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQI 67
E +N AY F Q Y+KEN+ AQ K N + +I
Sbjct: 124 ENFNNAYPTNYNAPSQDPFSQAQSYPQNAYTKENSQAQPSKYQNSVPEI 172
>ref|NP_223832.1| HISTIDYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 442
Score = 21.2 bits (43), Expect = 4.0
Identities = 9/22 (40%), Positives = 12/22 (53%)
Query: 15 KEYGEPYNKAYDDLRQELELLG 36
K+Y E K DL + +LLG
Sbjct: 238 KDYNENLKKGIQDLERLYQLLG 259
>ref|NP_223696.1| PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN [Helicobacter pylori J99]
Length = 764
Score = 21.2 bits (43), Expect = 4.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 43 SVYVNYSKENTLAQVYKAINKLSQIEWFKKSVRD 76
SVY+N+ K +T+ ++ LS+ + S D
Sbjct: 283 SVYINHQKRSTIVIKHQDQKDLSECLLLEASYTD 316
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 20.8 bits (42), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 27 DLRQELELLGFEWTQGSVYVNYSKE 51
DL+ L LGFE S + SKE
Sbjct: 453 DLKNSLNALGFEGVDLSFSQDSSKE 477
>ref|NP_223209.1| cag island protein [Helicobacter pylori J99]
Length = 268
Score = 20.8 bits (42), Expect = 5.2
Identities = 8/29 (27%), Positives = 16/29 (54%)
Query: 4 LAFDLKIEILKKEYGEPYNKAYDDLRQEL 32
+ D+ +E KKE E Y + D++ ++
Sbjct: 229 IQIDMSVEAKKKELFEKYFQNIDEVTNKM 257
Score = 20.0 bits (40), Expect = 8.8
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 20 PYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQVYKAINKLS 65
P N AYD ++ + W Q + V K+ + ++ I++++
Sbjct: 209 PTNHAYDFTHLIMDSIIPNWIQIDMSVEAKKKELFEKYFQNIDEVT 254
>ref|NP_222858.1| putative [Helicobacter pylori J99]
Length = 197
Score = 20.8 bits (42), Expect = 5.2
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 32 LELLGFEWTQGSVYVNYSKENTLAQVYKAINKLSQIEWFKKSVR 75
L +GF W S N SK + I +S+ + K VR
Sbjct: 10 LVFVGFLWANESYVFNNSKGRLTEKSVAFIEGVSKELYLKTGVR 53
>ref|NP_223328.1| OXYGEN-INDEPENDENT COPROPORPHYRINOGEN III OXIDASE [Helicobacter
pylori J99]
Length = 457
Score = 20.4 bits (41), Expect = 6.8
Identities = 10/35 (28%), Positives = 18/35 (50%)
Query: 60 AINKLSQIEWFKKSVRDIRAFKVEDFSDFTEIVKS 94
A+ + + W KK++R I + D EI++S
Sbjct: 240 AVFNYAHVPWVKKTMRKIDETLLPSPRDKLEILES 274
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 20.0 bits (40), Expect = 8.8
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 5 AFDLKIEILKKEYGEPYNKAYDDLRQ 30
+ ++ E K EY + ++Y+D+ +
Sbjct: 123 SIEITREFFKSEYSNTHLESYEDVER 148
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 20.0 bits (40), Expect = 8.8
Identities = 9/38 (23%), Positives = 21/38 (54%)
Query: 19 EPYNKAYDDLRQELELLGFEWTQGSVYVNYSKENTLAQ 56
+P++ + +E + E TQ + +++ EN++AQ
Sbjct: 121 KPWDLGSKEASKENASMSEELTQNNSKLSHFNENSIAQ 158
>ref|NP_222931.1| putative PEPTIDE METHIONINE SULFOXIDE REDUCTASE [Helicobacter
pylori J99]
Length = 359
Score = 20.0 bits (40), Expect = 8.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 35 LGFEWTQGSVYVNYSKENTLAQVYKAINK 63
+G ++ G YVN + + + KA+ K
Sbjct: 121 VGRQYRTGIYYVNSADKEVIDNALKALQK 149
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.317 0.135 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,980
Number of Sequences: 1491
Number of extensions: 4262
Number of successful extensions: 27
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of query: 94
length of database: 494,079
effective HSP length: 70
effective length of query: 24
effective length of database: 389,709
effective search space: 9353016
effective search space used: 9353016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 40 (20.0 bits)