BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644944|ref|NP_207114.1| hypothetical protein
[Helicobacter pylori 26695]
(130 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223548.1| putative [Helicobacter pylori J99] 102 5e-24
ref|NP_223550.1| putative [Helicobacter pylori J99] 45 5e-07
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 32 0.008
ref|NP_223994.1| putative [Helicobacter pylori J99] 30 0.029
ref|NP_222774.1| putative [Helicobacter pylori J99] 30 0.029
ref|NP_223787.1| putative [Helicobacter pylori J99] 27 0.14
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 27 0.19
ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 ... 26 0.42
ref|NP_223025.1| putative [Helicobacter pylori J99] 26 0.42
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223387.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) ... 25 0.55
ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99] 25 0.55
ref|NP_222780.1| putative [Helicobacter pylori J99] 25 0.55
ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SU... 25 0.71
ref|NP_222912.1| putative [Helicobacter pylori J99] 25 0.71
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 25 0.93
ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99] 25 0.93
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 24 1.2
ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME ... 23 2.1
ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99] 23 2.1
ref|NP_224063.1| putative thiophene/furan oxidation protein... 23 2.7
ref|NP_223788.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223614.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223415.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_223296.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_222827.1| putative [Helicobacter pylori J99] 23 2.7
ref|NP_224149.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylo... 23 3.5
ref|NP_223610.1| putative [Helicobacter pylori J99] 23 3.5
ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS P... 23 3.5
ref|NP_224093.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223773.1| putative [Helicobacter pylori J99] 22 4.6
ref|NP_223265.1| putative secretion/efflux abc transporter,... 22 4.6
ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) ... 22 4.6
ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99] 22 6.0
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 6.0
ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylo... 22 6.0
ref|NP_223202.1| cag island protein [Helicobacter pylori J99] 22 7.9
ref|NP_222782.1| putative [Helicobacter pylori J99] 22 7.9
ref|NP_222772.1| putative [Helicobacter pylori J99] 22 7.9
>ref|NP_223548.1| putative [Helicobacter pylori J99]
Length = 83
Score = 102 bits (253), Expect = 5e-24
Identities = 59/118 (50%), Positives = 67/118 (56%), Gaps = 40/118 (33%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA 60
MPNTT KDYTKYS+KQLFNLI+QLE
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNLINQLE---------------------------------- 25
Query: 61 LNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTNELKRE 118
QKISQAFDDKR CCLGHEIPN+ETQQA+R ALNG NL I+ + NE+K+E
Sbjct: 26 -----QKISQAFDDKRGCCLGHEIPNLETQQAIRGALNGENLEVIEDFSAWANEIKKE 78
>ref|NP_223550.1| putative [Helicobacter pylori J99]
Length = 95
Score = 45.4 bits (106), Expect = 5e-07
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 12/86 (13%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLE-------RKIKKMQNDRISFKEKMAKELEKRDQN 53
MPNTT KDYTKYS+KQLFN ++ ++ K+K++Q K+++ K L+ + +
Sbjct: 1 MPNTT-NKDYTKYSQKQLFNFLNSIKAKQKRALEKLKEIQTQ----KQRIKKALQFKALH 55
Query: 54 FKDKIDALNELLQKISQAFDDKRDCC 79
+ + E + +++A D K C
Sbjct: 56 LTENGYTIEEEREILARAKDTKNRLC 81
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 31.6 bits (70), Expect = 0.008
Identities = 22/88 (25%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 44 AKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALN--GIN 101
A+ L+ + DK++ +N+ L+ S++FD+ ++ ET +A++ ++ GIN
Sbjct: 677 AQNLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGIN 736
Query: 102 ---LTQIDSLDDFTNELKRENSKGFENV 126
++++++L+ NE K +K F V
Sbjct: 737 PEWISKVENLNAALNEFKNGKNKDFSKV 764
Score = 25.8 bits (55), Expect = 0.42
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 14 SEKQLFNLIHQLE---RKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDAL-NELLQKIS 69
S++++ N + +E + K+ N KEK E+E ++ K +DAL N+ + +S
Sbjct: 393 SQEEIQNKVDFMEFLAQNNAKLDNLSKKEKEKFQNEIEDFQKDSKAYLDALGNDHIAFVS 452
Query: 70 QAFDDKRDCCLGHEIPNIETQQAMRD 95
+ DK+ L E N E ++D
Sbjct: 453 K--KDKKHLALVAEFGNGELSYTLKD 476
>ref|NP_223994.1| putative [Helicobacter pylori J99]
Length = 168
Score = 29.6 bits (65), Expect = 0.029
Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 10 YTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELE------------KRDQNFKDK 57
Y EK+ ++ + +LE+ + + + + +++ +ELE K D + K
Sbjct: 25 YLYLKEKEFYHKMRRLEKTLDESYQENYLYSKRL-RELEGRLEGLSLEKSAKEDSSLKTT 83
Query: 58 IDALNELLQKISQAFDDKRD 77
+ L LQ+I ++ D +RD
Sbjct: 84 LSHLYNQLQEIQKSMDKERD 103
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 29.6 bits (65), Expect = 0.029
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 5 TAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNEL 64
T + D + L N LE++ ++Q D F EK LEK +Q DK+ L
Sbjct: 166 TTENDKLNHQVTALTNERDSLEQERARLQ-DAHGFLEKRCTNLEKENQRLTDKLKQLESA 224
Query: 65 LQKISQAFDDKRDCCLGHEIPNIETQQA 92
+ + + R E N++ QA
Sbjct: 225 QKSLENTNNQLRQAL---ENSNVQLAQA 249
Score = 24.6 bits (52), Expect = 0.93
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKI 68
++ ++LE+ + K+++D LNE L K+
Sbjct: 294 KRQNRKLEEENIALKERVDGLNEQLSKL 321
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 27.3 bits (59), Expect = 0.14
Identities = 19/66 (28%), Positives = 34/66 (50%), Gaps = 1/66 (1%)
Query: 7 KKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQ 66
+KD+T K L+ + ++I + + FK K+ KE E D++ + +I L +L +
Sbjct: 155 EKDFTDSCWKNLYKKNEEEFKEILEGFKRKEKFKGKILKEFE-NDKHNQSEIVGLEKLKE 213
Query: 67 KISQAF 72
KI F
Sbjct: 214 KIEIVF 219
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 26.9 bits (58), Expect = 0.19
Identities = 25/90 (27%), Positives = 37/90 (40%), Gaps = 14/90 (15%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGI 100
EK K +EK ++FK A E L+ + D+K D L + +Q ++D L +
Sbjct: 269 EKDKKRVEKVQESFKALDKAKKEWLKALEAPIDEKED-ELVRSLTLAYKRQTLKDRLYDL 327
Query: 101 NLTQ-------------IDSLDDFTNELKR 117
T + S D F ELKR
Sbjct: 328 EPTSKLINELVKTMETTLKSGDGFEKELKR 357
>ref|NP_223210.1| DNA transfer protein (Agrobacterium VirB4 homolog) [Helicobacter
pylori J99]
Length = 983
Score = 25.8 bits (55), Expect = 0.42
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 41 EKMAKELEKRDQNFKDKIDALNELLQK 67
E+ + + + +NFKD+I+ + ELL K
Sbjct: 295 EEFQRIIRAKLENFKDRIELIEELLSK 321
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 25.8 bits (55), Expect = 0.42
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 40 KEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNG 99
+++ +ELE +D+ ++ +E +Q+ +Q DK E P ETQ+ +++
Sbjct: 354 QDETPQELEAQDEKLQENETPKDESMQESAQNLQDK-------ETPQEETQEDHYESIED 406
Query: 100 I 100
I
Sbjct: 407 I 407
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.4 bits (54), Expect = 0.55
Identities = 12/28 (42%), Positives = 20/28 (70%)
Query: 40 KEKMAKELEKRDQNFKDKIDALNELLQK 67
KEK +LE + Q ++KI+AL++L Q+
Sbjct: 308 KEKHLNDLEDQKQILENKINALSDLEQQ 335
Score = 22.3 bits (46), Expect = 4.6
Identities = 15/51 (29%), Positives = 25/51 (48%)
Query: 6 AKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKD 56
A+K ++ K+L L QL+ +K + KEK +E++ D KD
Sbjct: 41 AEKLFSALYLKRLKFLNSQLQNSLKSVIESFDYSKEKALEEIKALDLGVKD 91
>ref|NP_223387.1| putative [Helicobacter pylori J99]
Length = 371
Score = 25.4 bits (54), Expect = 0.55
Identities = 12/62 (19%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 3 NTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALN 62
N K+ + +++ LI +ER+ K+ + F+ + K +E+ ++ KD + +
Sbjct: 160 NNECKEIFGNELKQRKTKLIEDIERRFKECEE---QFRGSVGKNIEQLEERVKDSLAIIK 216
Query: 63 EL 64
+
Sbjct: 217 RI 218
>ref|NP_223264.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 433
Score = 25.4 bits (54), Expect = 0.55
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 7/46 (15%)
Query: 25 LERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQ 70
LE K+ M++ KE + D+ F +K D LN++++KI +
Sbjct: 393 LEHKVHLMEDSAKHVKENI-------DKMFYEKQDELNKIIEKIQK 431
>ref|NP_223140.1| OLIGOPEPTIDASE [Helicobacter pylori J99]
Length = 578
Score = 25.4 bits (54), Expect = 0.55
Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 14 SEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFD 73
SE+++ L+H +RKI+K ++ +K LEK L +L +
Sbjct: 177 SEEEILALLHNPKRKIRKKS------QKAFSKSLEK-------SRPLLTYILNMV----- 218
Query: 74 DKRDCCLGHEIPNIETQQAMRDALNGINLTQIDSLDDFTN 113
++D + ++ + +++ R N I+ +DS+ + N
Sbjct: 219 -RKDLLIETKLRKYDKKESFRHIDNQISQESVDSMIEIVN 257
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 25.4 bits (54), Expect = 0.55
Identities = 15/46 (32%), Positives = 23/46 (49%), Gaps = 3/46 (6%)
Query: 28 KIKKMQNDRISFKE---KMAKELEKRDQNFKDKIDALNELLQKISQ 70
KIK+ ND + E + ELE+ +N KID + E + +Q
Sbjct: 323 KIKESPNDSNAINEAFDNLETELERATENLSQKIDPVLERNENYTQ 368
>ref|NP_224141.1| TYPE I RESTRICTION ENZYME (MODIFICATION SUBUNIT) [Helicobacter
pylori J99]
Length = 815
Score = 25.0 bits (53), Expect = 0.71
Identities = 34/124 (27%), Positives = 56/124 (44%), Gaps = 16/124 (12%)
Query: 8 KDYTKYSEKQLFNL-IHQLERKIKKMQNDRISFKEKMAKELE-KRDQNFKD-KIDALNEL 64
K+ T +KQ+ + LE K N + K K +ELE K +K+ +I+ + +L
Sbjct: 696 KNATDLEDKQILKTALEWLEAK-----NKALKMKNKAYEELELKAFHQYKNLEINEIKDL 750
Query: 65 LQKISQAFDDKRDCCLGHEIPNI--ETQQAMRDALNGINLTQIDSLDDFTNELKRENSKG 122
+ K DK L + + N + A ALN I + +SL + E+K SK
Sbjct: 751 IIK------DKWLNSLKNALENKIQKRTNAFASALNEIISSYSNSLLELDKEVKESESKV 804
Query: 123 FENV 126
E++
Sbjct: 805 LEHL 808
>ref|NP_222912.1| putative [Helicobacter pylori J99]
Length = 916
Score = 25.0 bits (53), Expect = 0.71
Identities = 18/86 (20%), Positives = 36/86 (40%)
Query: 24 QLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHE 83
+L + K+ +++ I F L+ + K+ I+ L EL DD R C +
Sbjct: 765 KLYLRYKEYKDNPIPFTFLPISGLKNDSNDMKETIEKLCELDNHPIVLTDDDRKCVFNQQ 824
Query: 84 IPNIETQQAMRDALNGINLTQIDSLD 109
+ ++A + + I + Q+ D
Sbjct: 825 ATSERFKRANEEMHDPITILQLSDCD 850
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 24.6 bits (52), Expect = 0.93
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 11 TKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKI 68
T+ +K++ + +HQ K Q ++ F ++ K+++K K + + LN+ QK+
Sbjct: 204 TQKLQKEIKSKVHQ-----KMEQTNKEYFLKEQLKQIQKELGTDKQRDEDLNQYYQKL 256
>ref|NP_222866.1| SHIKIMATE KINASE I [Helicobacter pylori J99]
Length = 162
Score = 24.6 bits (52), Expect = 0.93
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 10 YTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDA---LNELLQ 66
Y K + L ++Q ER+ + + N+ KE K ++N IDA LN L+
Sbjct: 96 YLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEKNASFIIDARGGLNNSLK 155
Query: 67 KISQ 70
++ Q
Sbjct: 156 QVLQ 159
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 24.3 bits (51), Expect = 1.2
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 2 PNTTAKKDYTKYSEKQL--FNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKID 59
P K+D + + K++ F+ + +I+K D+IS E M K +E N
Sbjct: 33 PVKPVKEDPQELAAKRVEAFSRFSNVVTEIEKKYVDKISISEIMTKAIEGLLSNLDAHSA 92
Query: 60 ALNELLQKISQA 71
LNE K QA
Sbjct: 93 YLNEKKFKEFQA 104
>ref|NP_224014.1| putative TYPE III DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 620
Score = 23.5 bits (49), Expect = 2.1
Identities = 16/70 (22%), Positives = 32/70 (44%), Gaps = 8/70 (11%)
Query: 47 LEKRDQNFKDKIDAL---NELLQKISQAFDDKRDCCLGHEIPNIETQQAMRDALNGINLT 103
++K+ N K + L N+L ++I + D+K D E N++ + R
Sbjct: 532 IKKQILNAKSASECLKIFNDLNKRILKRADNKMDAIHSEEFQNLDLNEQKRKC-----CA 586
Query: 104 QIDSLDDFTN 113
+D+ +D+ N
Sbjct: 587 SLDANEDYLN 596
Score = 21.9 bits (45), Expect = 6.0
Identities = 22/64 (34%), Positives = 29/64 (44%), Gaps = 11/64 (17%)
Query: 11 TKYSEKQL-FNLIHQLERKIKKMQNDRIS----FKEKMA------KELEKRDQNFKDKID 59
T++ EK L F L H+ KK I+ F EK KELEK FK+KI
Sbjct: 27 TEHDEKLLIFMLEHENANDYKKHFFKTIANSLVFNEKALLECLEIKELEKSFTRFKNKIG 86
Query: 60 ALNE 63
++
Sbjct: 87 LFSQ 90
>ref|NP_222732.1| DNA PRIMASE [Helicobacter pylori J99]
Length = 559
Score = 23.5 bits (49), Expect = 2.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 15 EKQLFNLI-HQLERKIKKMQNDRISFKEKM 43
EK+L LI ER++K++ +SF EKM
Sbjct: 509 EKELRLLILRYFERQLKEIPKSPLSFSEKM 538
>ref|NP_224063.1| putative thiophene/furan oxidation protein [Helicobacter pylori
J99]
Length = 461
Score = 23.1 bits (48), Expect = 2.7
Identities = 17/61 (27%), Positives = 30/61 (48%), Gaps = 1/61 (1%)
Query: 8 KDYTKYSEKQLFNLIHQLERKIKKMQNDRIS-FKEKMAKELEKRDQNFKDKIDALNELLQ 66
K + + + L L+ E I + D S F ++++ LEK+ +FKD +D N Q
Sbjct: 161 KIFIEEARNNLLKLLASSEVLIDYSEEDIPSDFLKEVSFNLEKQIASFKDLLDFSNAQKQ 220
Query: 67 K 67
+
Sbjct: 221 R 221
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 23.1 bits (48), Expect = 2.7
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 22 IHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRD 77
+HQ E +I++++ + + ++ E EK+ +K++ E KI +A +K +
Sbjct: 131 LHQKEAEIERLKRENNEAESRLKAENEKK---LNEKLELERE---KIEKALHEKNE 180
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 23.1 bits (48), Expect = 2.7
Identities = 21/88 (23%), Positives = 38/88 (42%), Gaps = 22/88 (25%)
Query: 48 EKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNIETQQAMR--------DALNG 99
EK + ++D ID N+LLQ L + + N++T + ++ ++LN
Sbjct: 72 EKIQEEYRDCIDYDNKLLQ-------------LHYSLENLQTLRELKEEADNNYQESLND 118
Query: 100 INL-TQIDSLDDFTNELKRENSKGFENV 126
L + D N + EN + FE +
Sbjct: 119 EKLQNNLREWRDLKNTPEEENYREFEEI 146
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 23.1 bits (48), Expect = 2.7
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 6 AKKDYTKYSEKQLFNLI-HQLERKIKKMQNDRISFKEKMAKELEKR 50
A +Y Y++ ++ ++I QLE +++ ++ I EK AKE K+
Sbjct: 149 AMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGKK 194
>ref|NP_223296.1| putative [Helicobacter pylori J99]
Length = 512
Score = 23.1 bits (48), Expect = 2.7
Identities = 11/37 (29%), Positives = 20/37 (53%)
Query: 17 QLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQN 53
Q+FNL+ Q E+ + ++N F + A+ +E N
Sbjct: 334 QIFNLLKQDEKASRMLKNYATKFPDFYARIVELSQYN 370
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 23.1 bits (48), Expect = 2.7
Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 2 PNTTAKKDYTKYSEKQLFNLIHQLERKIKKMQNDRIS---FKEKMAK--ELEKRDQNFKD 56
P + + K ++K+ +I K +++ + F EK+ K E K ++ +
Sbjct: 478 PTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELDFE 537
Query: 57 KIDALNELLQKISQAFDDKR 76
+++ L+ + + + FDDKR
Sbjct: 538 ELENLSAEIDNVKELFDDKR 557
>ref|NP_224149.1| putative [Helicobacter pylori J99]
Length = 293
Score = 22.7 bits (47), Expect = 3.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 33 QNDRISFKEKMAKELEKRDQNFKDKIDAL 61
+ND + E M K LEKR + +I+++
Sbjct: 262 KNDVCRYTEWMPKNLEKRKEELIKRIESV 290
>ref|NP_224146.1| L-ALANINE DEHYDROGENASE [Helicobacter pylori J99]
Length = 380
Score = 22.7 bits (47), Expect = 3.5
Identities = 11/30 (36%), Positives = 15/30 (49%)
Query: 1 MPNTTAKKDYTKYSEKQLFNLIHQLERKIK 30
MP AK T YS + L++ LE +K
Sbjct: 304 MPGIVAKTSSTAYSHASVPYLLYYLEHGLK 333
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 22.7 bits (47), Expect = 3.5
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 17 QLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKDKI 58
+L NL+ + IK+ Q KE++ ++ E + +F ++I
Sbjct: 141 ELENLVENEVKNIKETQQIIFKKKEELVEKTEPKIYSFYERI 182
>ref|NP_223338.1| putative LIPOPOLYSACCHARIDE BIOSYNTHESIS PROTEIN [Helicobacter
pylori J99]
Length = 315
Score = 22.7 bits (47), Expect = 3.5
Identities = 13/49 (26%), Positives = 25/49 (50%), Gaps = 6/49 (12%)
Query: 8 KDYTKYSEKQLFNLIHQLERKIKKMQNDRISFKEKMAKELEKRDQNFKD 56
KD +K++F+L+ ++ D ++ KEK+ EL+K + D
Sbjct: 113 KDLEVKYQKRVFSLLPL------RLHCDTLALKEKIKSELDKNPEKVFD 155
>ref|NP_224093.1| putative [Helicobacter pylori J99]
Length = 86
Score = 22.3 bits (46), Expect = 4.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 22 IHQLERKIKKMQNDRISFKEKM 43
+H LER I ++ + +S K+ M
Sbjct: 31 VHSLERVIDRLNDPNLSLKDGM 52
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 22.3 bits (46), Expect = 4.6
Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 28 KIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAFDDKRDCCLGHEIPNI 87
K+ + Q D + KE+ +E E+ ++ ++ E K +Q + K + E +
Sbjct: 67 KVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQKNE---QEEQRRL 123
Query: 88 ETQQAMR------DALNGINLTQIDSLDDFTNELKRENSK 121
QQ ++ + L G+ +L+ FT +L+ +K
Sbjct: 124 REQQRLKQNQENQEMLKGLQ----QNLNQFTQKLESVKNK 159
>ref|NP_223265.1| putative secretion/efflux abc transporter, ATP-binding protein
[Helicobacter pylori J99]
Length = 589
Score = 22.3 bits (46), Expect = 4.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 78 CCLGHEIPNIETQQAMRDALNGINLTQI 105
C L ++IP ETQ + + ++ I I
Sbjct: 325 CILDYKIPKPETQIKLEEKIHSITFENI 352
>ref|NP_222816.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 564
Score = 22.3 bits (46), Expect = 4.6
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 11 TKYSEKQLFNLIHQLERK---IKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQK 67
T+ S K ++ ++ K I M N I + + K L + K+ DA+ +L +
Sbjct: 310 TQKSMKNSSTTLNSVKNKATDIASMMNASIEQSQGLRKRLIETQGLVKESKDAIGDLFSQ 369
Query: 68 ISQA 71
I+++
Sbjct: 370 ITES 373
>ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori J99]
Length = 897
Score = 21.9 bits (45), Expect = 6.0
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 19 FNLIHQL-ERKIKKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQKISQAF 72
F L++ + +K+ + + +S + + KR + KD ++ + E + K S+AF
Sbjct: 731 FGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAF 785
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 21.9 bits (45), Expect = 6.0
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 99 GINLTQIDSLDDFTNELKRENSK 121
G N T +D+L++ N LK+E++K
Sbjct: 151 GANAT-LDALNESLNRLKKESTK 172
>ref|NP_222945.1| GLUTAMYL TRNA REDUCTASE [Helicobacter pylori J99]
Length = 449
Score = 21.9 bits (45), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (60%)
Query: 109 DDFTNELKRENSKGFENV 126
+DF EL+ GF+NV
Sbjct: 233 EDFVKELEEPKKVGFQNV 250
>ref|NP_223202.1| cag island protein [Helicobacter pylori J99]
Length = 114
Score = 21.6 bits (44), Expect = 7.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 25 LERKIKKMQNDRISFKEKMAKELEK 49
++R I K++ + + FK K L+K
Sbjct: 1 MKRPISKLKQNFLQFKHSFNKHLDK 25
>ref|NP_222782.1| putative [Helicobacter pylori J99]
Length = 117
Score = 21.6 bits (44), Expect = 7.9
Identities = 9/38 (23%), Positives = 24/38 (62%)
Query: 30 KKMQNDRISFKEKMAKELEKRDQNFKDKIDALNELLQK 67
+K++++ + K+A +LE +Q + ++ +NE L++
Sbjct: 34 QKLKSEALENMLKIAHDLENLEQETQYEMRKINEQLEE 71
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 21.6 bits (44), Expect = 7.9
Identities = 11/32 (34%), Positives = 16/32 (49%)
Query: 88 ETQQAMRDALNGINLTQIDSLDDFTNELKREN 119
+TQ+ +DAL N + + T EL EN
Sbjct: 8 DTQENPKDALKSTNFHEKHTKPTETTELVEEN 39
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.315 0.132 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,496
Number of Sequences: 1491
Number of extensions: 6732
Number of successful extensions: 59
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 47
length of query: 130
length of database: 494,079
effective HSP length: 68
effective length of query: 62
effective length of database: 392,691
effective search space: 24346842
effective search space used: 24346842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 44 (21.6 bits)