BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644945|ref|NP_207115.1| outer membrane protein
(omp9) [Helicobacter pylori 26695]
(745 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223551.1| outer membrane protein - adhesin [Helicoba... 981 0.0
ref|NP_223882.1| outer membrane protein - adhesin [Helicoba... 939 0.0
ref|NP_222729.1| putative Outer membrane protein [Helicobac... 796 0.0
ref|NP_222743.1| putative Outer membrane protein [Helicobac... 751 0.0
ref|NP_223979.1| putative Outer membrane protein [Helicobac... 657 0.0
ref|NP_222933.1| putative Outer membrane protein [Helicobac... 657 0.0
ref|NP_223820.1| putative Outer membrane function [Helicoba... 536 e-154
ref|NP_223377.1| putative Outer membrane protein [Helicobac... 396 e-112
ref|NP_223380.1| putative Outer membrane protein [Helicobac... 374 e-105
ref|NP_222935.1| Outer membrane protein/porin [Helicobacter... 301 5e-83
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 151 5e-38
ref|NP_223567.1| Outer membrane protein/porin [Helicobacter... 143 2e-35
ref|NP_222959.1| putative Outer membrane protein [Helicobac... 143 2e-35
ref|NP_223800.1| putative Outer membrane protein [Helicobac... 142 4e-35
ref|NP_223566.1| Outer membrane protein/porin [Helicobacter... 135 4e-33
ref|NP_223332.1| putative Outer membrane protein [Helicobac... 122 3e-29
ref|NP_222958.1| putative Outer membrane protein [Helicobac... 117 1e-27
ref|NP_224112.1| putative Outer membrane protein [Helicobac... 107 1e-24
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 105 5e-24
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 104 9e-24
ref|NP_222795.1| putative Outer membrane protein [Helicobac... 100 1e-22
ref|NP_223027.1| putative Outer membrane protein [Helicobac... 100 1e-22
ref|NP_224080.1| putative Outer membrane protein [Helicobac... 98 9e-22
ref|NP_222838.1| putative Outer membrane protein [Helicobac... 96 3e-21
ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobac... 90 2e-19
ref|NP_223363.1| Outer membrane protein/porin [Helicobacter... 86 4e-18
ref|NP_223299.1| putative Outer membrane protein [Helicobac... 73 2e-14
ref|NP_223142.1| putative Outer membrane protein [Helicobac... 71 1e-13
ref|NP_223757.1| putative Outer membrane protein [Helicobac... 68 7e-13
ref|NP_224064.1| putative Outer membrane protein [Helicobac... 55 6e-09
ref|NP_223450.1| putative Outer membrane protein [Helicobac... 50 2e-07
ref|NP_223588.1| putative outer membrane protein [Helicobac... 47 1e-06
ref|NP_223367.1| putative Outer membrane protein [Helicobac... 47 1e-06
ref|NP_223088.1| putative [Helicobacter pylori J99] 45 7e-06
ref|NP_224132.1| putative [Helicobacter pylori J99] 44 2e-05
ref|NP_223725.1| putative outer membrane protein [Helicobac... 42 4e-05
ref|NP_223751.1| putative Outer membrane protein [Helicobac... 38 8e-04
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 32 0.045
ref|NP_222995.1| putative vacuolating cytotoxin (VacA) para... 32 0.076
ref|NP_223618.1| putative [Helicobacter pylori J99] 29 0.38
ref|NP_222814.1| putative [Helicobacter pylori J99] 29 0.38
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 29 0.49
ref|NP_222990.1| putative [Helicobacter pylori J99] 28 0.84
ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori... 27 1.4
ref|NP_223662.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_223617.1| putative [Helicobacter pylori J99] 27 1.4
ref|NP_223274.1| putative vacuolating cytotoxin (VacA) para... 27 1.9
ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(... 26 3.2
ref|NP_223273.1| putative [Helicobacter pylori J99] 26 3.2
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 26 3.2
ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Hel... 26 4.2
ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN... 26 4.2
ref|NP_222796.1| putative [Helicobacter pylori J99] 26 4.2
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 25 5.4
ref|NP_223211.1| cag island protein [Helicobacter pylori J99] 25 5.4
ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter... 25 7.1
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 25 7.1
ref|NP_223773.1| putative [Helicobacter pylori J99] 25 9.3
ref|NP_223381.1| putative Outer membrane protein [Helicobac... 25 9.3
>ref|NP_223551.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 744
Score = 981 bits (2535), Expect = 0.0
Identities = 524/770 (68%), Positives = 585/770 (75%), Gaps = 51/770 (6%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKKHILSL LGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQ LSD YE+LNNLL
Sbjct: 1 MKKHILSLTLGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQDLSDRYESLNNLL 60
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
RYSTLNTLIKLSADPSAINAVRENLGAS KNLIGDKANSPAYQAV LAINAAVG WN +
Sbjct: 61 NRYSTLNTLIKLSADPSAINAVRENLGASAKNLIGDKANSPAYQAVLLAINAAVGFWNVV 120
Query: 121 GYAVMCG-NGNGTESGPGSVIFNDQPGQDSTQITCN-RFESTGPGKSMSIDEFKKLNEAY 178
GY CG N NG +S IFN++PG ST ITC+ S G MSI+ FKKLNEAY
Sbjct: 121 GYVTQCGGNANGQKSISSKTIFNNEPGYRSTSITCSLNGHSPGYYGPMSIENFKKLNEAY 180
Query: 179 QIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNG 238
QI+Q ALK G P L N KV+V Y Y C + N C ++ ++ G
Sbjct: 181 QILQTALKR--GLPALKENNGKVNVTYTYTCSGDGNNN------CSSQVTGVNNQKDGTK 232
Query: 239 SSTQT----TATTTQDGVTITTTYNNNKATVKF-DITN-------NAEQLLNQAANIMQV 286
+ QT + TTT + + + N V + +ITN +A+ LL QA+ ++
Sbjct: 233 TKIQTIDGKSVTTTISSKVVDSRADGNTTGVSYTEITNKLEGVPDSAQALLAQASTLINT 292
Query: 287 LNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVS 346
+N CP ++N+ P +T+G C F +E S + MI +AQE++ Q+ +++
Sbjct: 293 INNACPYFHASNSSEA---NAPKFSTTTGKICGAFSEEISAIQKMITDAQELVNQTSVIN 349
Query: 347 ENAQNQ---NNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNV 403
E+ Q NN GKPFNP+TDASFAQ ML NA AQA+M NL+EQV + +
Sbjct: 350 EHEQTTPVGNN--NGKPFNPFTDASFAQGMLANASAQAKMLNLAEQVGQAINP------- 400
Query: 404 NEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAG--------VTSNTWGAGCAYVGETIS 455
E+L+G NFV FLA+C + T G VT+ T+ +GCAYVG+TI+
Sbjct: 401 -ERLSG-----TFQNFVKGFLATCNNPSTAGTGGTQGSAPGTVTTQTFASGCAYVGQTIT 454
Query: 456 ALTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVV 515
L NSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALS +PNAQSLQN V
Sbjct: 455 NLKNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAV 514
Query: 516 SKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQV 575
SKKNNPYSPQGI+TNYYLNQNSYNQIQTINQELGRNPFRKVGIV+SQTNNGAMNGIGIQV
Sbjct: 515 SKKNNPYSPQGIDTNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQV 574
Query: 576 GYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFL 635
GYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFL
Sbjct: 575 GYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFL 634
Query: 636 GKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARS 695
GKNNKLS+GLFGGIALAGTSWLNSEYVNLAT+NNVYNAKMNVANFQFLFNMGVRMNLAR
Sbjct: 635 GKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARP 694
Query: 696 KKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
KKK SDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
Sbjct: 695 KKKDSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 744
>ref|NP_223882.1| outer membrane protein - adhesin [Helicobacter pylori J99]
Length = 703
Score = 939 bits (2428), Expect = 0.0
Identities = 506/754 (67%), Positives = 563/754 (74%), Gaps = 60/754 (7%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKK +L L L L AEDDGFY S G +IGEAAQMV NTKGIQQLS+NYE LNNLL
Sbjct: 1 MKKTLL---LSLSLSFGLHAEDDGFYASAGIRIGEAAQMVKNTKGIQQLSENYEKLNNLL 57
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
Y+TLNTL+KLS+DPSA+N R+NLG+ST+NL+ KANSPAYQAV LA+NAAVGLW
Sbjct: 58 NNYNTLNTLVKLSSDPSAVNDARDNLGSSTRNLLDVKANSPAYQAVLLALNAAVGLWQVT 117
Query: 121 GYA-VMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQ 179
YA CG G+ + G FN+ PGQ++T ITCN + G G +S + +N+AYQ
Sbjct: 118 SYAFTACGPGSNENANGGIQTFNNVPGQNTTTITCNSYYEPGHGGPISTKNYAIINKAYQ 177
Query: 180 IIQQALK-NQSGFPELGGNGTKVSVNYNYECRQTADINGG-VYQFCKAKNGSSSSSNGGN 237
IIQ+AL N G P L TK+ N + R + N VY + + G
Sbjct: 178 IIQKALTANGEGIPVLSNTTTKLDFTINGDKRTGGEPNKKLVYPW-----------SHGK 226
Query: 238 GSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRST 297
ST AT +T TT N N TN+A++LL QA+ I+ LN+ CP
Sbjct: 227 AISTSWNAT-----ITAPTTENINT-------TNSAQELLKQASIIITTLNSACP----- 269
Query: 298 NNENTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDT 357
N G G G+S +G C +F+ E S + MI NAQE +AQ+KIVSEN QNQN+LD
Sbjct: 270 -NFQNGGSGYWAGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENTQNQNSLDA 328
Query: 358 GKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMT 417
GKPFNPYTDASFA+SMLKNAQAQAE+ N +EQV KN E ++ T
Sbjct: 329 GKPFNPYTDASFAESMLKNAQAQAEILNQAEQVVKNFE------------------KIPT 370
Query: 418 NFVSAFLASCKD------GGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQI 471
FV+ L C + GT P TSNTWGAGCAYVG+TI+ L NSIAHFGTQEQQI
Sbjct: 371 AFVNDSLGVCYEVQGGERRGTNPGQ-TTSNTWGAGCAYVGQTITNLKNSIAHFGTQEQQI 429
Query: 472 QQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNY 531
QQAENIADTLVNFKSRYSELGNTYNSITTALS +PNAQSLQN VSKKNNPYSPQGI+TNY
Sbjct: 430 QQAENIADTLVNFKSRYSELGNTYNSITTALSNIPNAQSLQNAVSKKNNPYSPQGIDTNY 489
Query: 532 YLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARY 591
YLNQNSYNQIQTINQELGRNPFRKVGIV+SQTNNGAMNGIGIQVGYKQFFGQKRKWGARY
Sbjct: 490 YLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARY 549
Query: 592 YGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIAL 651
YGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLS+GLFGGIAL
Sbjct: 550 YGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIAL 609
Query: 652 AGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELG 711
AGTSWLNSEYVNLAT+NNVYNAKMNVANFQFLFNMGVRMNLAR KKK SDHAAQHGIELG
Sbjct: 610 AGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARPKKKDSDHAAQHGIELG 669
Query: 712 LKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
LKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
Sbjct: 670 LKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 703
>ref|NP_222729.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 796 bits (2057), Expect = 0.0
Identities = 414/748 (55%), Positives = 528/748 (70%), Gaps = 86/748 (11%)
Query: 2 KKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLT 61
K +LSL+ SLL +AED+GF+ S GYQIGEAAQMV NT +++LSD YENL+NLLT
Sbjct: 3 KTLLLSLSASSLL----NAEDNGFFISAGYQIGEAAQMVKNTGELKKLSDTYENLSNLLT 58
Query: 62 RYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTIG 121
++ LN + ++ PS INA +NL A+T+ LIG+K NSPAYQAV+LA+NAAVGLWN I
Sbjct: 59 NFNNLNQAVTNASSPSEINAAIDNLKANTQGLIGEKTNSPAYQAVYLALNAAVGLWNVIA 118
Query: 122 YAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCN-RFESTGPGKSMSIDEFKKLNEAYQI 180
Y V CG GN SG SV F QPG +S+ I CN + G +SI+ FKKLN+AYQ
Sbjct: 119 YNVQCGPGN---SGQQSVTFEGQPGHNSSSINCNLTGYNNGVSGPLSIENFKKLNQAYQT 175
Query: 181 IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS 240
IQQALK SGFP L G +V++ ++ +NG N S
Sbjct: 176 IQQALKQDSGFPVLDSAGKQVTITI------------------------TTQTNGANKSE 211
Query: 241 TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNE 300
T TT TT TN+A+ LL +A+ ++ VL T CP V +
Sbjct: 212 TTTTTTT----------------------TNDAQTLLQEASKMISVLTTNCPWVNHNQGQ 249
Query: 301 NTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKP 360
N GG PWGL T+GN C +F EFS VTSMIKNAQEI+ Q++ +++ QNN + +
Sbjct: 250 N---GGAPWGLDTAGNVCQVFATEFSAVTSMIKNAQEIVTQAQSLNQ----QNNQNAPQD 302
Query: 361 FNPYT--DASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTN 418
FNPYT D +FAQ+ML +AQAQA++ L++Q+KK+L + +
Sbjct: 303 FNPYTSADRAFAQNMLNHAQAQAKILELADQMKKDLNT------------------IPSQ 344
Query: 419 FVSAFLASCKD-GGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENI 477
F++ +LA+C + GGTLP+AGVT+NTWGAGCAYV ETI+AL NS+AHFGTQ +QI+Q+E +
Sbjct: 345 FITNYLAACHNGGGTLPDAGVTNNTWGAGCAYVEETITALNNSLAHFGTQAEQIKQSELL 404
Query: 478 ADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNS 537
A T+++F+ S L NTYNSITT S PN+ L+N++S+ NP +P G++ Y +NQ++
Sbjct: 405 ARTILDFRGSLSNLNNTYNSITTTASNTPNSPFLKNLISQSTNPNNPGGLQAVYQVNQSA 464
Query: 538 YNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY 597
Y+Q+ + QELG NPFR+VG+++SQTNNGAMNGIG+QVGYKQFFG+KR+WG RYYGFFDY
Sbjct: 465 YSQLLSATQELGHNPFRRVGLISSQTNNGAMNGIGVQVGYKQFFGEKRRWGLRYYGFFDY 524
Query: 598 NHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWL 657
NHA+IKSSFFNSASDV+TYG G D LYNFINDK T KN+K+S G+FGGIALAGTSWL
Sbjct: 525 NHAYIKSSFFNSASDVFTYGVGTDVLYNFINDKTT----KNSKISFGVFGGIALAGTSWL 580
Query: 658 NSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTI 717
NS+YVNLAT NN Y+AKMNVANFQFLFN+G+RMNLA++KKK SDHAAQHG+ELG+KIPTI
Sbjct: 581 NSQYVNLATFNNFYSAKMNVANFQFLFNLGLRMNLAKNKKKASDHAAQHGVELGVKIPTI 640
Query: 718 NTNYYSFMGAELKYRRLYSVYLNYVFAY 745
NTNYYS +G +L+YRRLYSVYLNYVFAY
Sbjct: 641 NTNYYSLLGTQLQYRRLYSVYLNYVFAY 668
>ref|NP_222743.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 690
Score = 751 bits (1939), Expect = 0.0
Identities = 414/761 (54%), Positives = 495/761 (64%), Gaps = 87/761 (11%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKK LSL LGSLLVS LSAED+GF+ S GYQIGE+AQMV NTKGIQ LSD+YE LNNLL
Sbjct: 1 MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLL 60
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
T YS LN LI+ SADP+AIN R NL AS KNLI DK NSPAYQAV LA+NAA GLW +
Sbjct: 61 TNYSVLNALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVM 120
Query: 121 GYAVM-CGNGNGTESGPGSVIFNDQPGQD--STQITCNRFE-STGPGKSMSIDEFKKLNE 176
YA+ CG G T G F++ P T ITC GP +S + + K+N+
Sbjct: 121 SYAISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTGYEPGPYSILSTENYAKINK 180
Query: 177 AYQIIQQALKNQS-GFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNG 235
AYQIIQ+A + P L T++ N N
Sbjct: 181 AYQIIQKAFGSSGKDIPALSDTNTELKFTIN--------------------------KNN 214
Query: 236 GNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVR 295
GN T T NN + V NNA+ LL QA+ I+ LN+ CP +
Sbjct: 215 GN-----------------TNTNNNGEEIVT---KNNAQVLLEQASTIITTLNSACPWI- 253
Query: 296 STNNENTPGG--GQPWG---LSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQ 350
NN G G W L G+AC IF+ E S + MIKNA + QSKIV+ NAQ
Sbjct: 254 --NNGGAGGASSGSLWEGIYLKGDGSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQ 311
Query: 351 NQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGF 410
NQ NLDTGK FNPY DA+FAQSM NA+AQAE+ N ++ V K+ E
Sbjct: 312 NQRNLDTGKTFNPYKDANFAQSMFANAKAQAEILNRAQAVVKDFE--------------- 356
Query: 411 GKEEVMTNFVSAFLASCKD--GGTL---PNAGVTSNTWGAGCAYVGETISALTNSIAHFG 465
+ FV L C + G L P+ VT NTWGAGCAYVGET++ L +SIAHFG
Sbjct: 357 ---RIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTDNTWGAGCAYVGETVTNLKDSIAHFG 413
Query: 466 TQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQ 525
Q ++I A N+A TL NF S+Y +LG Y+SIT A+S +P+AQSLQNVVSKK NP SPQ
Sbjct: 414 DQAERIHNARNLAYTLANFSSQYQKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQ 473
Query: 526 GIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVN-SQTNNGAMNGIGIQVGYKQFFGQK 584
GI+ NYY++ N ++Q+Q+ +QELG NPFR+ G++ S TNNGAMNGIG QVGYKQFFG+
Sbjct: 474 GIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKN 533
Query: 585 RKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLG 644
++WGARYYGF DYNH + KS FFN++SDVWTYG G+D L NFINDKAT K+NK+S G
Sbjct: 534 KRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFINDKAT----KHNKISFG 589
Query: 645 LFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAA 704
FGGIALAGTSWLNS+YVNLA VNN Y AK+N ANFQFLFN+G+RMNLAR K + +D+AA
Sbjct: 590 AFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLRMNLARKKHRATDNAA 649
Query: 705 QHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
QHGIELG KIPTINTNYYS +G L+YRRLYSVYLNYVFAY
Sbjct: 650 QHGIELGTKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY 690
>ref|NP_223979.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 657 bits (1696), Expect = 0.0
Identities = 364/762 (47%), Positives = 474/762 (61%), Gaps = 85/762 (11%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
+KK + +L+ SL+ S AEDDGFY SVGYQIGEA Q V NT +Q L+D Y+NL+NLL
Sbjct: 3 IKKSLFALSF-SLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLL 61
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
+Y+ LN+L+ L++ PSAI +NL +S NL SPAYQAV LA+NAAVG+W I
Sbjct: 62 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 121
Query: 121 GYAVMCGNG----------NGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDE 170
+ + CG G G S + ++ G +T TCN + GP +S E
Sbjct: 122 AFGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSSE 181
Query: 171 FKKLNEAYQIIQQALKNQSGFPELGGNGTK---VSVNYNYECRQTADINGGVYQFCKAKN 227
++ LN AYQ IQ AL G N +K V++N + T + Y + +
Sbjct: 182 YQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTE-----YTY---PD 233
Query: 228 GSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVL 287
G+ + +GG+ Q +K N+AE LL QAA I+ VL
Sbjct: 234 GNGNYYSGGSSIPIQ----------------------LKISSVNDAENLLQQAATIINVL 271
Query: 288 NTQCPLVRSTNNENTPGGGQPWGLS-TSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVS 346
TQ P V GGG WG +GN IF F+ + MIKNAQ ++ +++ ++
Sbjct: 272 TTQNPHVN--------GGGGAWGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLN 323
Query: 347 ENAQNQNNLDTGKPFNPYT--DASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVN 404
N Q + FNPYT D FAQ ML A AQAE+ +L++QV N ++
Sbjct: 324 ANENTQ--ITQPDNFNPYTSKDTQFAQEMLNRANAQAEILSLAQQVADNFHSIQGP---- 377
Query: 405 EKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTS-NTWGAGCAYVGETISALTNSIAH 463
+ L C G +AGV + NT+G+GCA+V ET+++L A+
Sbjct: 378 ---------------IQQDLEECTAG----SAGVINDNTYGSGCAFVKETLNSLEQHTAY 418
Query: 464 FGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYS 523
+G Q + Q ++ T++NFK S LGN +I + +S +PNA+SLQN+ NP S
Sbjct: 419 YGNQ---VNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNS 475
Query: 524 PQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQ 583
P+G+ T Y L+ + YNQ+QT+ QELG+NPFR++G++N Q NNGAMNGIG+Q GYKQFFG+
Sbjct: 476 PEGLLT-YSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNNGAMNGIGVQAGYKQFFGK 534
Query: 584 KRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSL 643
KR WG RYYGFFDYNHA+IKS+FFNSASDVWTYG G DALYNFINDK TNFLGKNNKLS+
Sbjct: 535 KRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSV 594
Query: 644 GLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHA 703
GLFGG ALAGTSWLNS+ VNL +N +YNA ++ +NFQFLF++G+RMNLAR KKK SDHA
Sbjct: 595 GLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKKDSDHA 654
Query: 704 AQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
AQHG+ELG+KIPTINT+YYSFMGAELKYRRLYSVYLNYVFAY
Sbjct: 655 AQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
>ref|NP_222933.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 696
Score = 657 bits (1696), Expect = 0.0
Identities = 364/762 (47%), Positives = 474/762 (61%), Gaps = 85/762 (11%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
+KK + +L+ SL+ S AEDDGFY SVGYQIGEA Q V NT +Q L+D Y+NL+NLL
Sbjct: 3 IKKSLFALSF-SLMASLSRAEDDGFYMSVGYQIGEAVQKVKNTGALQNLADRYDNLSNLL 61
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
+Y+ LN+L+ L++ PSAI +NL +S NL SPAYQAV LA+NAAVG+W I
Sbjct: 62 NQYNYLNSLVNLASTPSAITGAIDNLSSSAINLTSATTTSPAYQAVALALNAAVGMWQVI 121
Query: 121 GYAVMCGNG----------NGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDE 170
+ + CG G G S + ++ G +T TCN + GP +S E
Sbjct: 122 AFGISCGPGPNLGPEHLENGGVRSFDNTPNYSYNTGSGTTTTTCNGASNVGPNGILSSSE 181
Query: 171 FKKLNEAYQIIQQALKNQSGFPELGGNGTK---VSVNYNYECRQTADINGGVYQFCKAKN 227
++ LN AYQ IQ AL G N +K V++N + T + Y + +
Sbjct: 182 YQVLNTAYQTIQTALNQNQGGGMPALNSSKNMVVNINQTFTKNPTTE-----YTY---PD 233
Query: 228 GSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVL 287
G+ + +GG+ Q +K N+AE LL QAA I+ VL
Sbjct: 234 GNGNYYSGGSSIPIQ----------------------LKISSVNDAENLLQQAATIINVL 271
Query: 288 NTQCPLVRSTNNENTPGGGQPWGLS-TSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVS 346
TQ P V GGG WG +GN IF F+ + MIKNAQ ++ +++ ++
Sbjct: 272 TTQNPHVN--------GGGGAWGFGGKTGNVMDIFGDSFNAINEMIKNAQAVLEKTQQLN 323
Query: 347 ENAQNQNNLDTGKPFNPYT--DASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVN 404
N Q + FNPYT D FAQ ML A AQAE+ +L++QV N ++
Sbjct: 324 ANENTQ--ITQPDNFNPYTSKDTQFAQEMLNRANAQAEILSLAQQVADNFHSIQGP---- 377
Query: 405 EKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTS-NTWGAGCAYVGETISALTNSIAH 463
+ L C G +AGV + NT+G+GCA+V ET+++L A+
Sbjct: 378 ---------------IQQDLEECTAG----SAGVINDNTYGSGCAFVKETLNSLEQHTAY 418
Query: 464 FGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYS 523
+G Q + Q ++ T++NFK S LGN +I + +S +PNA+SLQN+ NP S
Sbjct: 419 YGNQ---VNQDRALSQTILNFKEALSTLGNDSKAINSGISNLPNAKSLQNMTHATQNPNS 475
Query: 524 PQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQ 583
P+G+ T Y L+ + YNQ+QT+ QELG+NPFR++G++N Q NNGAMNGIG+Q GYKQFFG+
Sbjct: 476 PEGLLT-YSLDTSKYNQLQTVAQELGKNPFRRIGVINYQNNNGAMNGIGVQAGYKQFFGK 534
Query: 584 KRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSL 643
KR WG RYYGFFDYNHA+IKS+FFNSASDVWTYG G DALYNFINDK TNFLGKNNKLS+
Sbjct: 535 KRNWGLRYYGFFDYNHAYIKSNFFNSASDVWTYGVGMDALYNFINDKNTNFLGKNNKLSV 594
Query: 644 GLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHA 703
GLFGG ALAGTSWLNS+ VNL +N +YNA ++ +NFQFLF++G+RMNLAR KKK SDHA
Sbjct: 595 GLFGGFALAGTSWLNSQQVNLTMMNGIYNANVSASNFQFLFDLGLRMNLARPKKKDSDHA 654
Query: 704 AQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
AQHG+ELG+KIPTINT+YYSFMGAELKYRRLYSVYLNYVFAY
Sbjct: 655 AQHGMELGVKIPTINTDYYSFMGAELKYRRLYSVYLNYVFAY 696
>ref|NP_223820.1| putative Outer membrane function [Helicobacter pylori J99]
Length = 643
Score = 536 bits (1382), Expect = e-154
Identities = 330/774 (42%), Positives = 431/774 (55%), Gaps = 166/774 (21%)
Query: 2 KKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLT 61
K +LSL L + S L AED+G + SVGYQIGEA Q V N +Q+LSD YE L+ LL
Sbjct: 6 KTILLSLTLAA---SLLHAEDNGVFLSVGYQIGEAVQKVKNADKVQKLSDVYEQLSKLLA 62
Query: 62 RYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTIG 121
+ T K SA AIN NL S K L G NSPAYQA LA+ +A+GLWN++G
Sbjct: 63 NDN--GTSSKTSAQ--AINQAVNNLNESAKTLAGGTTNSPAYQATLLALRSALGLWNSMG 118
Query: 122 YAVMCG-------------------NGNGTESG-PGSVIFNDQPGQDSTQITCNRFESTG 161
YAV+CG NGNGT GS N + T
Sbjct: 119 YAVVCGGYIKKPGENNQKNFHYTDENGNGTTINCGGSTNSNGTHSPNGTNTL-----KAD 173
Query: 162 PGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQ 221
S+SI++++K++EAYQI+ +ALK Q+G L G K+ +
Sbjct: 174 KNVSLSIEQYEKIHEAYQILSKALK-QAGLAPLNSKGEKLEAHV---------------- 216
Query: 222 FCKAKNGSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAA 281
++S G+S+ T TTT D TN+A+ LL QA
Sbjct: 217 ---------TTSKDQQGTSSDQTTTTTS----------------VIDTTNDAQNLLTQAQ 251
Query: 282 NIMQVLNTQCPLV--RSTNNENTPGGGQP-WGLSTSG-NACSIFQQEFSQVTSMIKNAQE 337
I+ L CP++ +S++N T G P W + G N+C+ F EFS ++ MI NAQ+
Sbjct: 252 TIVNTLKDYCPMLIAKSSSNGGTNGANTPSWQTAGGGKNSCATFGAEFSAISDMISNAQK 311
Query: 338 IIAQSKIVSENAQNQNNLDTGKPFN---PYTDASFAQSMLKNAQAQAEMFNLSEQVKKNL 394
I+ +++ + NA N+ FN P + + AQSMLKNAQ+Q E+ L+ QV +
Sbjct: 312 IVQETQQL--NANQPKNITQPNNFNLNSPGSLTALAQSMLKNAQSQTEILKLANQVASDF 369
Query: 395 EVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTSN---TWGAGCAYVG 451
+ ++ + ++ ++ C G + N TWG GCA V
Sbjct: 370 D------------------KLSSGYLKDYIGKCDVSGVSSSNMTPQNMNTTWGKGCAGVE 411
Query: 452 ETISALTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSL 511
ET+++L S F N+ TT ++ AQ+L
Sbjct: 412 ETLTSLKASTTDF-------------------------------NNQTTP--QLDQAQTL 438
Query: 512 QNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGI 571
N T+ QELG NPF++VGI+ SQTNNGAMNG+
Sbjct: 439 AN-----------------------------TLTQELGNNPFKRVGIIGSQTNNGAMNGL 469
Query: 572 GIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKA 631
G+Q GYKQFFGQKR+WG RYYGFFDYNH +IKSSFFNS+SDV TYG G+D L+NFINDK
Sbjct: 470 GVQAGYKQFFGQKRRWGLRYYGFFDYNHTYIKSSFFNSSSDVLTYGVGSDLLFNFINDKN 529
Query: 632 TNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMN 691
TNFLGKNNK+S+GLFGGIALAGTSWLNS++VNL T++NVY+AK+N ANFQFLFN+G+R N
Sbjct: 530 TNFLGKNNKISVGLFGGIALAGTSWLNSQFVNLKTISNVYSAKVNTANFQFLFNLGLRTN 589
Query: 692 LARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
LAR KKK SDH+AQHG+ELG+KIPTINTNYYS++G +L+YRRLYSVYLNYVFAY
Sbjct: 590 LARPKKKDSDHSAQHGMELGVKIPTINTNYYSYLGTKLEYRRLYSVYLNYVFAY 643
>ref|NP_223377.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 638
Score = 396 bits (1018), Expect = e-112
Identities = 258/749 (34%), Positives = 380/749 (50%), Gaps = 115/749 (15%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKK IL SL S L AED+GF+ S GYQIGEA QMV NT ++ L+D YE L+ L
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTGELKNLNDKYEQLSQSL 60
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
+ ++L I+ + + A+N +L + N +K SP Y I + + W+
Sbjct: 61 AQLASLKKSIQTANNIQAVNNALSDLKSFASNNHTNKETSPIYNTAQAVITSVLAFWSLY 120
Query: 121 GYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQI 180
+ + G G S + G+ C + MS + + K+ +
Sbjct: 121 AGNALSFHVTGLNDGSNSPL-----GRIHRDGNCTGLQQC----FMSKETYDKMKTLAEN 171
Query: 181 IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS 240
+Q+A N C SS+ SNGG S
Sbjct: 172 LQKAQGN----------------------------------LCALSECSSNQSNGGKTSM 197
Query: 241 TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNE 300
T T Q L+ Q M N V TN
Sbjct: 198 TTALQTAQQ-----------------------LMDLIEQTKVSMVWKNIVIAGV--TNKP 232
Query: 301 NTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKP 360
N G ++++G+ V + IK I+ Q+ +S++ + +
Sbjct: 233 NGAGA-----ITSTGHVTDY------AVFNNIKAMLPILQQALTLSQSNHTLSTQLQARA 281
Query: 361 FNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFV 420
T+ FA+ + AQ Q + ++ N +++ K++ +
Sbjct: 282 MGSQTNREFAKDIYALAQNQKQ-------------ILSNASSIFNLFNSIPKDQ-LKYLE 327
Query: 421 SAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADT 480
+A+L +P+ G T + + I+A+ +++A++G + + A ++A
Sbjct: 328 NAYLK-------VPHLGKTPTNPYRQNVNLNKEINAVQDNVANYGNR---LDSALSVAKD 377
Query: 481 LVNFKSRYSELGNTYN---SITTALSKVP-NAQSLQNVVSKKNNPYSPQGIETNYYLNQN 536
+ N KS +E+ TYN +++ +SK+P N ++ N+V + + Q Y +N
Sbjct: 378 VYNLKSNQTEIVTTYNDAKNLSEEISKLPYNQVNVTNIVMSPKDSTAGQ-----YQINPE 432
Query: 537 SYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFD 596
+ + + NPF+KVG+++SQ NNGA+NG+G+QVGYKQFFG+ ++WG RYYGFFD
Sbjct: 433 QQSNLNQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFFD 492
Query: 597 YNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSW 656
YNH +IKSSFFNS+SD+WTYG G+D L NFIND T KNNKLS+GLFGGI LAGT+W
Sbjct: 493 YNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR---KNNKLSVGLFGGIQLAGTTW 549
Query: 657 LNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPT 716
LNS+Y+NL NN Y+AK+N +NFQFLFN+G+R NLA +KKK S+ +AQHG+ELG+KIPT
Sbjct: 550 LNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIPT 609
Query: 717 INTNYYSFMGAELKYRRLYSVYLNYVFAY 745
INTNYYSF+G +L+YRRLYSVYLNYVFAY
Sbjct: 610 INTNYYSFLGTKLEYRRLYSVYLNYVFAY 638
>ref|NP_223380.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 651
Score = 374 bits (961), Expect = e-105
Identities = 259/750 (34%), Positives = 379/750 (50%), Gaps = 104/750 (13%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKK IL SL S L AED+GF+ S GYQIGEA QMV NT L NL
Sbjct: 1 MKKTILLSLSLSLASSLLHAEDNGFFVSAGYQIGEAVQMVKNTG----------ELKNLN 50
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
+Y L+ + N AS K I + N + V ++N N
Sbjct: 51 EKYEQLSQYL--------------NQVASLKQSIQNANN---IELVNSSLNYLKSFTNN- 92
Query: 121 GYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQI 180
N N T P IFN ++ + F S G ++ K +
Sbjct: 93 -------NYNSTTQSP---IFNAVQAVITSVLG---FWSLYAGNYLTFFVVNKDTQKPAS 139
Query: 181 IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSS 240
+Q GN ++ N + +N Y K K + ++
Sbjct: 140 VQ-------------GNPPFSTIVQNCSGIENCAMNQTTYD--KMKKLAEDLQAAQQNAT 184
Query: 241 TQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNE 300
T+ G TT N ++ + N A+QL++ AN + + ++ +N
Sbjct: 185 TKANNLCALSGCA--TTQGQNPSSTVSNALNLAQQLMDLIANTKTAMMWKNIVIAGVSNV 242
Query: 301 NTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKP 360
+ G G T F+ + +MI Q+ + S+ + + TG
Sbjct: 243 S--GAIDSTGYPTQ-------YAVFNNIKAMIPILQQAVTLSQSNHTLSASLQAQATGSQ 293
Query: 361 FNPYTDASFAQSMLKNAQAQAEMFNLSEQVKKNLE-VMKNNNNVNEKLAGFGKEEVMTNF 419
NP FA+ + AQ Q ++ + ++ + + K+ EK
Sbjct: 294 TNP----KFAKDIYAFAQNQKQVISYAQDIFNLFSSIPKDQYRYLEK------------- 336
Query: 420 VSAFLASCKDGGTLPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIAD 479
A+L +PNAG T + + I + N+++++G + + A ++A
Sbjct: 337 --AYLK-------IPNAGKTPTNPYRQEVNLNQEIQTIQNNVSYYGNR---VDAALSVAK 384
Query: 480 TLVNFKSRYSELGNTYNS---ITTALSKVP-NAQSLQNVVSKKNNPYSPQGIETNYYLNQ 535
+ N KS +E+ TYN+ ++ +SK+P N + +++++ + +P + NY +N
Sbjct: 385 DVYNLKSNQTEIVTTYNNAKNLSQEISKLPYNQVNTKDIITLPYDQNAPAAGQYNYQINP 444
Query: 536 NSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFF 595
+ + + NPF+KVG+++SQ NNGA+NG+G+QVGYKQFFG+ ++WG RYYGFF
Sbjct: 445 EQQSNLSQALAAMSNNPFKKVGMISSQNNNGALNGLGVQVGYKQFFGESKRWGLRYYGFF 504
Query: 596 DYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTS 655
DYNH +IKSSFFNS+SD+WTYG G+D L NFIND T KNNKLS+GLFGGI LAGT+
Sbjct: 505 DYNHGYIKSSFFNSSSDIWTYGGGSDLLVNFINDSITR---KNNKLSVGLFGGIQLAGTT 561
Query: 656 WLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIP 715
WLNS+Y+NL NN Y+AK+N +NFQFLFN+G+R NLA +KKK S+ +AQHG+ELG+KIP
Sbjct: 562 WLNSQYMNLTAFNNPYSAKVNASNFQFLFNLGLRTNLATAKKKDSERSAQHGVELGIKIP 621
Query: 716 TINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
TINTNYYSF+G +L+YRRLYSVYLNYVFAY
Sbjct: 622 TINTNYYSFLGTKLEYRRLYSVYLNYVFAY 651
>ref|NP_222935.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 483
Score = 301 bits (770), Expect = 5e-83
Identities = 190/521 (36%), Positives = 279/521 (53%), Gaps = 81/521 (15%)
Query: 250 DGVTITTTYNNNKATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPW 309
DGV ++ Y +A T +++ N N+ +L L ++ +N ++
Sbjct: 19 DGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLLTRYNELKQTASNTDSSTAQAID 78
Query: 310 GLSTSGNACSIFQQEFSQ-VTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDAS 368
L S + +Q V+S + +A + ++++ N N N+L +
Sbjct: 79 NLEKSASRLKTTPNTANQAVSSALSSA---VGMWQVIASNLAN-NSLSS----------- 123
Query: 369 FAQSMLKNAQAQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTN---FVSAFLA 425
++ E + Q+ +N KNNN E ++++T ++ +
Sbjct: 124 ----------SEYEKLKATSQLLQNTLENKNNNLKIEN----DYDQLLTQASTIINTLQS 169
Query: 426 SCK--DGGTLPNAGVTSNTWGAGCAYVGETISALTNSI--------------AHFGTQEQ 469
C DGG G+ NT G CA G T +A+ + I Q+
Sbjct: 170 QCPGVDGGNGKPWGI--NTSGNACAIFGSTFNAINSMIDSAKKAAADARRTAPESPNQQN 227
Query: 470 QIQQAE-----NIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSP 524
A+ N +++N Y + G+ +I + K PN++ Q++VS+ + YS
Sbjct: 228 AFTNADFNKNLNQVSSVINDTISYLK-GDNLETIYNTIQKTPNSKGFQSLVSRSSYSYS- 285
Query: 525 QGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQK 584
LN+ Y+Q QT +E G NPFR VG++NSQ+NNGAMNG+G+Q+GYKQFFG+
Sbjct: 286 --------LNETQYSQFQTTTKEFGHNPFRSVGLINSQSNNGAMNGVGVQLGYKQFFGKN 337
Query: 585 RKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLG 644
+ +G RYYGFFDYN+A+IKS+FFNSAS+V+TYG G+D L NFIN + +N K+S G
Sbjct: 338 KFFGIRYYGFFDYNYAYIKSNFFNSASNVFTYGAGSDLLLNFINGGS----DRNRKVSFG 393
Query: 645 LFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAA 704
+FGGIALAGT+WLN++ NL N+ Y+AK+N NFQFLFN G+R+
Sbjct: 394 IFGGIALAGTTWLNNQSANLKITNSAYSAKINNTNFQFLFNTGLRL-----------QGI 442
Query: 705 QHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
HGIELG+KIPTINTNYYSFMGA+L YRRLYS+YLNYV AY
Sbjct: 443 HHGIELGVKIPTINTNYYSFMGAKLAYRRLYSLYLNYVLAY 483
Score = 102 bits (253), Expect = 5e-23
Identities = 82/239 (34%), Positives = 112/239 (46%), Gaps = 52/239 (21%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLL 60
MKK IL SL+VS+L AE+DG Y SVGYQIGEAAQMV NT IQ++S+ YENLNNLL
Sbjct: 1 MKKTILL----SLMVSSLFAENDGVYMSVGYQIGEAAQMVKNTGEIQKVSNAYENLNNLL 56
Query: 61 TRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLWNTI 120
TRY+ L + D S A+ +NL S L + A QAV A+++AVG+W I
Sbjct: 57 TRYNELKQTAS-NTDSSTAQAI-DNLEKSASRL--KTTPNTANQAVSSALSSAVGMWQVI 112
Query: 121 GYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLNEAYQI 180
S S+S E++KL Q+
Sbjct: 113 A-------------------------------------SNLANNSLSSSEYEKLKATSQL 135
Query: 181 IQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGS 239
+Q L+N++ N K+ +Y+ Q + I + C +G + G N S
Sbjct: 136 LQNTLENKN-------NNLKIENDYDQLLTQASTIINTLQSQCPGVDGGNGKPWGINTS 187
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 151 bits (382), Expect = 5e-38
Identities = 159/636 (25%), Positives = 257/636 (40%), Gaps = 129/636 (20%)
Query: 153 TCNRFESTGPGKSMS--IDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECR 210
T N ++G G S + ++ Y +Q AL Q+ NG+ N Y +
Sbjct: 688 TTNNACASGMGSSGNWCYQQWSDSKAYYSGLQSALGYQT--QATTQNGSSGGSNITYNVQ 745
Query: 211 QTADINGG----VYQFCKAKNGSSSSSNGGNGSSTQTTA----TTTQDGVTITTTYNNNK 262
Q +GG + K+ NG S+ + GNG+S TA T DG TYN++
Sbjct: 746 QITLTSGGLLNQIITNLKSVNGGSNGGSSGNGTSQINTAYQMLTDASDGKL--GTYNSSN 803
Query: 263 ATVKFDITNNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSIFQ 322
++ + NN T C STN N G + + NA +
Sbjct: 804 SSNSSNSGNNNGY-------------TPC---NSTNGSNGTSGSNCYEPNKQQNATTATT 847
Query: 323 QEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAE 382
S + + +AQ+I + I++ + N+
Sbjct: 848 TTDSNLQKVYNDAQKI---ANIIASSGNNKG----------------------------- 875
Query: 383 MFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDG-----GTLPNAG 437
+ +K+ E +K+N++ L G G S ++C G G +P G
Sbjct: 876 ---VENGLKQFFEALKSNSSSLSNLCGNGS--------SGSSSTCSGGLINLLGAIPTNG 924
Query: 438 VTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADTLVN-FKSRYSELGNTYN 496
V+ I+ LT I G + + N++ +L + F++ S + +
Sbjct: 925 VSDTN---------NLINLLTEFIKTAGFIQNK---DSNVSTSLTSAFQAITSAISQGFQ 972
Query: 497 SITTALSKVPNAQSLQNVVSKKNNPYSPQ-------GIETNYYLNQ-------NSYNQIQ 542
++ +S LQ + S S G +T + + Q N+ NQ+Q
Sbjct: 973 ALQNDISPNAILTLLQEITSNTTTIQSFSQTLRQLLGDKTFFMVQQKLIDAMINARNQVQ 1032
Query: 543 TINQEL---GRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNH 599
+ G P T +G NG+G+ +GYK FFG+ RK G R+Y FFDY
Sbjct: 1033 NAQNQANNYGSQPVLSQYAAAKSTQHGMSNGLGVGIGYKYFFGKARKLGLRHYFFFDYGF 1092
Query: 600 AFIKSSFFNSASDVWTYGFGADALYNFI----NDKATNFLGKNNKLSLGLFGGIALAGTS 655
+ I + + ++++ YG G D L+N N KA NF GLF G+ L G +
Sbjct: 1093 SEIGLANQSVKANIFAYGVGTDFLWNLFRRTYNTKALNF---------GLFAGVQLGGAT 1143
Query: 656 WLNSEYVNLATVNNVYNAK-MNVANFQFLFNMGVRMNLARSKK-----KGSDHAAQHGIE 709
WL+S + ++N NA ++ NFQ N GVR N A K+ +Q +E
Sbjct: 1144 WLSS--LRQQIIDNWGNANDIHSTNFQVALNFGVRTNFAEFKRFAKKFHNQGVISQKSVE 1201
Query: 710 LGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
G+K+P IN Y + GA++ YRRLY+ Y+NY+ +
Sbjct: 1202 FGIKVPLINQAYLNSAGADVSYRRLYTFYINYIMGF 1237
Score = 53.1 bits (126), Expect = 2e-08
Identities = 122/548 (22%), Positives = 199/548 (36%), Gaps = 81/548 (14%)
Query: 2 KKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLT 61
KK I +GSLL AED+G+Y SVGYQIG Q + N +QL +N +N+ N +T
Sbjct: 6 KKFIPFFLIGSLL-----AEDNGWYMSVGYQIGGTQQFINN----KQLLEN-QNIINSIT 55
Query: 62 RYSTLNT------LIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVG 115
+ S +N LI LS+ V + LG N +G++ +
Sbjct: 56 Q-SAINIAGPTTGLITLSS-----QTVIDALGYGVSNTVGNQ------------LEGISN 97
Query: 116 LWNTIGYAVMCGNGNGTESGPGSVI----FNDQPGQDSTQITCNRFESTGPGKSMSIDEF 171
+ N IG + S +I +D S+QIT +T I
Sbjct: 98 ILNQIGKRKDFYSSRQISSISQQIIGLKGSSDPLKAHSSQITAKLLSNTQSAFDQGIALS 157
Query: 172 KKLNEAYQIIQQALKNQSGFPELGGNGTKVS---VNYNYECRQTADINGGVYQFCKAKNG 228
+ A + + +Q +L ++ + +T +
Sbjct: 158 SNIISAVNSLNPSNNSQEVKAQLQNTAQSMAELLQQIEHSITKTTSTTYAQSLLSNLTDA 217
Query: 229 SSSSSNGGNGSSTQTTATTTQD-GVTITTTYN----NNKATVKFDITNNAEQLLNQAANI 283
++SSN S A T GV TTT N V F TN+ + +N
Sbjct: 218 VNASSNNTTYVSALVNALNTLGVGVFPTTTSTHVVLNPPGQVVFYPTNSLLGSTSSNSNN 277
Query: 284 MQVLNTQCPL-----VRSTNNENTPGG------------GQPWGLSTSGNACSIFQQEFS 326
Q N + STNN+N P G L+ + + + Q+
Sbjct: 278 QQQYNNTLLMNTLQGELSTNNQNNPNGCANQIQCLEQFIQNLTPLAATPTSTNQANQQVQ 337
Query: 327 QVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNL 386
+ +++ + ++ N NNL F Y NA Q +
Sbjct: 338 AIAQKLQSVAINALDNNAINNTTYNLNNLHNALNFQAYQSTI---EQYNNALKQISWISF 394
Query: 387 SEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGVTSNTWGAG 446
SE KNL +KN +N N ++ ++ +SA+ + G +A + G
Sbjct: 395 SE--PKNL--LKNTSN-NYQIGTVTNDQGQN--ISAYDCTSATGSLSSDA-----SSGIS 442
Query: 447 CAYVGETISALTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKV- 505
C+ T + TNS + ++Q VN + S++ + YNS+ T+ +
Sbjct: 443 CSATSSTNN--TNSFDNSLVATSKVQTINGKEQIGVNSFNLVSQVWSVYNSLKTSEENLQ 500
Query: 506 PNAQSLQN 513
NA+ L N
Sbjct: 501 KNAKILCN 508
>ref|NP_223567.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 527
Score = 143 bits (360), Expect = 2e-35
Identities = 110/377 (29%), Positives = 171/377 (45%), Gaps = 29/377 (7%)
Query: 386 LSEQVKKNLEVMKNNN---NVNEKLAGFGKEEVMTNFVSAFLASCKDGGTL----PNAGV 438
LS+ + KN+ NN N++ +L+ V ++++FL + G + N
Sbjct: 163 LSQNISKNIFQGDNNTTSANLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAY 222
Query: 439 TSNTWGAGCAYVGETISALTNSIAHFGTQ--------EQQIQQAENIADTLVNFKSRYSE 490
+ AYV + S G Q + + N + L + K S
Sbjct: 223 ENGVTAQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFNSANAGNDL-SAKEFTSL 281
Query: 491 LGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQ--NSYNQIQTINQEL 548
+ N N+ AL+ NA + + + + + LN N+ ++ +N EL
Sbjct: 282 VQNIVNNSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVTALNNEL 341
Query: 549 GRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFN 608
NP+ + + A NG ++GYKQFFG+ + G RYYGFF YN A + +
Sbjct: 342 KANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTY 401
Query: 609 SASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVN 668
+ ++ TYG G D LYN + + L+ G FGGI LAG + Y++ +
Sbjct: 402 NQVNLLTYGVGTDVLYNVFSRSF-----GSRSLNAGFFGGIQLAGDT-----YISTLRNS 451
Query: 669 NVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAE 728
++ FQFLF++G+RMN KK H QH IE+G++IPTI YY GAE
Sbjct: 452 PQLASRPTATKFQFLFDVGLRMNFGILKKDLKSH-NQHSIEIGVQIPTIYNTYYKAGGAE 510
Query: 729 LKYRRLYSVYLNYVFAY 745
+KY R YSVY Y +A+
Sbjct: 511 VKYFRPYSVYWVYGYAF 527
Score = 39.3 bits (90), Expect = 4e-04
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 6 LSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYST 65
LSLAL SL + + AE+DG + + GY++G+ Q V N I+ E L LL +T
Sbjct: 28 LSLAL-SLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKA-----EELAGLLNSTTT 81
Query: 66 LNTLIKLSADPSAINAVRENL 86
NT I ++ + NL
Sbjct: 82 NNTNINIAGTGGNVAGTLGNL 102
>ref|NP_222959.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 471
Score = 143 bits (360), Expect = 2e-35
Identities = 76/190 (40%), Positives = 111/190 (58%), Gaps = 15/190 (7%)
Query: 561 SQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSA--SDVWTYGF 618
+ + +G +NG GIQVGYKQFFG K+ G RYY FFDY F + NSA ++++TYG
Sbjct: 292 TSSQHGVINGFGIQVGYKQFFGSKKNIGLRYYAFFDY--GFTQLGSLNSAVKANIFTYGA 349
Query: 619 GADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVA 678
G D L+N + + L++G+FGGI +AG +W +S + N +
Sbjct: 350 GTDFLWNIFRR-----VFSDQSLNVGVFGGIQIAGNTWDSS---LRGQIENSFKEYPTPT 401
Query: 679 NFQFLFNMGVRMNLARSKKK---GSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLY 735
NFQFLFN+G+R + A + + + + QHG+E G+KIP IN Y GA++ YRRLY
Sbjct: 402 NFQFLFNLGLRAHFASTMHRRFLSASQSIQHGMEFGVKIPAINQRYLKANGADVDYRRLY 461
Query: 736 SVYLNYVFAY 745
+ Y+NY +
Sbjct: 462 AFYINYTIGF 471
Score = 42.7 bits (99), Expect = 3e-05
Identities = 24/43 (55%), Positives = 28/43 (64%), Gaps = 1/43 (2%)
Query: 1 MKKHILSLAL-GSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTN 42
+KK +L AL SL +S AEDDGFY VGYQIG A Q + N
Sbjct: 24 LKKGLLKTALLFSLPLSVALAEDDGFYMGVGYQIGGAQQNINN 66
>ref|NP_223800.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 697
Score = 142 bits (357), Expect = 4e-35
Identities = 194/782 (24%), Positives = 301/782 (37%), Gaps = 145/782 (18%)
Query: 5 ILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTK-GIQQLSDNYENLNNLLTRY 63
I S L ++ L AEDDGF+ V YQ A Q V N+ Q + Y N +
Sbjct: 12 IYSSLLPLFFLNPLMAEDDGFFMGVSYQTSLAVQRVDNSGLNASQDASTYIRQNAIALES 71
Query: 64 STLNTLIKLSA--------------DPSAINAVRENLGASTKNLIGDKANSPA---YQAV 106
+ + L A DPS + + +N GD N+P A
Sbjct: 72 AAVPLAYYLEAMGQQTRVLMQMLCPDPSKRCLLYAGGYQNGQNNNGDTGNNPPRGNVNAT 131
Query: 107 F---LAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPG 163
F +N L IG ++ E+ P S +FN + G ST I G
Sbjct: 132 FDMQSLVNNLNKLTQLIGETLI----RNPENLPNSKVFNVKFGNQSTVIALPE------G 181
Query: 164 KSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFC 223
+ ++D N+ + NQ+ + + SVN++ + Q
Sbjct: 182 LANTMDALN--NDITNALTTLWYNQTLTNKSFSTPSNTSVNFSPQVLQHL---------- 229
Query: 224 KAKNGSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAEQLLNQAANI 283
++G ++++N STQ T T N A+ + A NI
Sbjct: 230 -LQDGLATANNNQTICSTQNQCTAT----------------------NEAKSIAQNAQNI 266
Query: 284 MQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSIFQQEFSQVTSMIKNAQEIIAQSK 343
Q L Q ++ NE G + + +G+ Q FS KN A K
Sbjct: 267 FQAL-MQAGILGGLANEKQ--FGFTYNKAPNGSDSQQGYQSFSGPGYYTKNDNTTQAPLK 323
Query: 344 IVSENAQNQNNLDTGKPFNPYTDAS----FAQSMLKNAQAQAEMF----NLSEQVKKNLE 395
+ A + +G Y +S A S++ N + +F N + + K +
Sbjct: 324 ALPAGA----TIGSGNGQYTYHPSSAVYYLADSIIANGITASMIFSGMQNFANKAAKLIG 379
Query: 396 VMKNNN-----NVNEKLAG--FGKEEVMTNFVSAFLASCKDG-GTLPNAGVTSNTWGAGC 447
N N E L + +TN+V+ +L G LPN G N
Sbjct: 380 TSSYNQMQDAINYGESLLSNTVAYGDFITNWVAPYLDLNNKGLNFLPNYGGQLNG----- 434
Query: 448 AYVGETISALTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPN 507
A+ T + QQA+ ++N L + N
Sbjct: 435 --------------ANNQTPQLTPQQAQQEQKVIMN-----------------QLEQATN 463
Query: 508 AQSLQNVVSKKNNPYSPQ-------GIETNYYLNQNSYNQIQT-INQELGRNPFRKVGIV 559
A + + NPYSP G+ + + +++QT +NQ R
Sbjct: 464 APTPAQINRILANPYSPTAKTLMAYGLYRSKAVIGGVIDEMQTKVNQVYQMGFARNFLEH 523
Query: 560 NSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFG 619
NS +NN MNG G+++GYKQFFG+KR +G RYYGF+D+ +A + + + +YG G
Sbjct: 524 NSNSNN--MNGFGVKMGYKQFFGKKRMFGLRYYGFYDFGYAQFGTESSLVKATLSSYGAG 581
Query: 620 ADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVAN 679
D LYN K + +G F GI LAG +W + +++ N++ K +
Sbjct: 582 TDFLYNVFTRKR-----GTEAIDIGFFAGIQLAGQTW-KTNFLDQVDGNHL---KPKDTS 632
Query: 680 FQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYL 739
FQFLF++G+R N ++ + +Q GIE GLKIP + YY G KYRR +S Y+
Sbjct: 633 FQFLFDLGIRTNFSKIAHQKRSRFSQ-GIEFGLKIPVLYHTYYQSEGVTAKYRRDFSFYV 691
Query: 740 NY 741
Y
Sbjct: 692 GY 693
>ref|NP_223566.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 520
Score = 135 bits (340), Expect = 4e-33
Identities = 127/474 (26%), Positives = 200/474 (41%), Gaps = 61/474 (12%)
Query: 312 STSGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQ 371
+T GN FSQ + A VS NA + +G A A
Sbjct: 68 NTGGNVAGALSNAFSQYLYSLLGAYPTKLNGNDVSANALLSGAVGSGT----CAAAGTAG 123
Query: 372 SMLKNAQAQAE------MFNLSEQV------KKNLEVMKNNNNVNEKLAGFGKEEVMTNF 419
N Q+ + +L++++ + N N N+ ++L V N
Sbjct: 124 GTTLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAGNVFFNA 183
Query: 420 VSAFLASCKDGGTLPNAGVTSNTWGA----GCAYVGETISALT------NSIAHFGTQEQ 469
++ L K+G N+ TS+T GA G Y + I L N+ A+ Q++
Sbjct: 184 MNKALE--KNGTATANS--TSSTSGATGSDGQTYSQQAIQYLQGQQNILNNAANLLKQDE 239
Query: 470 QIQQAENIADTLVNFKSRYSELGNT-------------YNSITTALSKVPNAQSLQNVVS 516
+ +A N A ++ T YN +T + ++ N
Sbjct: 240 LLLEAFNSAVAANIGNKEFNSAAFTGLVQGIIDQSQLVYNELT---KNTISGSAVNNAGI 296
Query: 517 KKNNPYSPQG----IETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIG 572
N + QG + Y Q + ++I +N ++ P+ + +NG
Sbjct: 297 NSNQANAVQGRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFY 356
Query: 573 IQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKAT 632
+VGYKQFFG+KR G RYYGFF YN A + + ++TYG G D LYN +
Sbjct: 357 TKVGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSY- 415
Query: 633 NFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNV-YNAKMNVANFQFLFNMGVRMN 691
+N + +G F GI LAG ++ ++ L NV + K+N +FQFLF+ G+RMN
Sbjct: 416 ----QNRSVDMGFFSGIQLAGETFQST----LRDDPNVKLHGKINNTHFQFLFDFGMRMN 467
Query: 692 LARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
+ K + H QH +E G+ +PTI YY G +KY R YSVY +Y +++
Sbjct: 468 FGKLDGKSNRH-NQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF 520
Score = 38.1 bits (87), Expect = 8e-04
Identities = 104/485 (21%), Positives = 163/485 (33%), Gaps = 96/485 (19%)
Query: 2 KKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSD------NYEN 55
K L L+L +L S AEDDG + +VGYQ+G+ Q V N G + SD N +
Sbjct: 4 KNRTLFLSL-ALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGAK--SDELARELNADV 60
Query: 56 LNNLLTRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVG 115
NN+L + N LS S + LGA L G+ ++ A ++ AVG
Sbjct: 61 TNNILNNNTGGNVAGALSNAFS--QYLYSLLGAYPTKLNGNDVSANA------LLSGAVG 112
Query: 116 LWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQDSTQITCNRFESTGPGKSMSIDEFKKLN 175
G G GT +TQ C T G + L
Sbjct: 113 ----SGTCAAAGTAGGTTL--------------NTQSAC-----TAAG-------YYWLP 142
Query: 176 EAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNG 235
I + +Q+ + GT + N+ +Q +N G F +
Sbjct: 143 SLTDRILSTIGSQTNY------GT--NTNFPNMQQQLTYLNAGNVFFNAMNKALEKNGTA 194
Query: 236 GNGSSTQTTATTTQDGVTITTTYNNNKATV---KFDITNNAEQLLNQ------------A 280
S++ T+ T DG TY+ + +I NNA LL Q A
Sbjct: 195 TANSTSSTSGATGSDG----QTYSQQAIQYLQGQQNILNNAANLLKQDELLLEAFNSAVA 250
Query: 281 ANI-------------MQVLNTQCPLVRSTNNENTPGGGQPWGLSTSGNACSIFQQEFSQ 327
ANI +Q + Q LV + +NT G + N + Q SQ
Sbjct: 251 ANIGNKEFNSAAFTGLVQGIIDQSQLVYNELTKNTISGSAVNNAGINSNQANAVQGRASQ 310
Query: 328 VTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNP---------YTDASFAQSMLKNAQ 378
+ + + N Q + + ++ ++ L + N YT + Q K
Sbjct: 311 LPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRATNILNGFYTKVGYKQFFGKKRN 370
Query: 379 AQAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPNAGV 438
+ ++ NNV G G + + F ++ D G +
Sbjct: 371 IGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQL 430
Query: 439 TSNTW 443
T+
Sbjct: 431 AGETF 435
>ref|NP_223332.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 270
Score = 122 bits (306), Expect = 3e-29
Identities = 75/202 (37%), Positives = 100/202 (49%), Gaps = 44/202 (21%)
Query: 568 MNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFI---------------------KSSF 606
M G+G+ VGYKQFFG+KR +GARYYGF DY HA K
Sbjct: 89 MQGLGLTVGYKQFFGEKRWFGARYYGFMDYGHAVFGANALTSDNGGVCKLNEPCATKVGT 148
Query: 607 FNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLAT 666
+ SD++TYG G D LYN IN + +F G F G +AG SW N+ L T
Sbjct: 149 MGNLSDMFTYGVGIDTLYNVINKEDASF---------GFFFGAQIAGNSWGNTTGAFLET 199
Query: 667 VNNVYNA--KMNVANFQFLFNMGVRMNLARSKKKGSDHAAQH-GIELGLKIPTINTNYYS 723
+ + ++ A FQFLFN+G+R H QH + G+KIPTIN Y++
Sbjct: 200 KSPYKHTSYSLDPAIFQFLFNLGIR-----------THIGQHQEFDFGVKIPTINVYYFN 248
Query: 724 FMGAELKYRRLYSVYLNYVFAY 745
YRR YS+Y+ Y + +
Sbjct: 249 HGNLSFTYRRQYSLYVGYRYNF 270
Score = 26.6 bits (57), Expect = 2.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 18 LSAEDDGFYTSVGYQIGEAAQMVTN 42
+ E + +Y + YQ+G+A+Q V N
Sbjct: 42 VKGEKNAWYLGISYQVGQASQSVKN 66
>ref|NP_222958.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 479
Score = 117 bits (292), Expect = 1e-27
Identities = 63/177 (35%), Positives = 94/177 (52%), Gaps = 11/177 (6%)
Query: 565 NGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALY 624
+ +MNG G ++GYKQFF K+ G RYYGF DY +A + +++ TYG G D LY
Sbjct: 310 SASMNGFGAKMGYKQFFTHKKNIGLRYYGFLDYGYANFGDTNLKVGANLVTYGVGTDFLY 369
Query: 625 NFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLF 684
N + + ++GLF G +AG +W N+ + + + ++FQFLF
Sbjct: 370 NVYERSR-----RRERTTIGLFFGAQIAGQTW----STNVTNLLSGQRPDVKSSSFQFLF 420
Query: 685 NMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNY 741
++GVR N A K + H GIE G+KIP I Y++ G+ Y R +S Y+ Y
Sbjct: 421 DLGVRTNFA--KTNFNKHRLDQGIEFGVKIPVIAHKYFATQGSSASYMRNFSFYVGY 475
Score = 28.1 bits (61), Expect = 0.84
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%)
Query: 1 MKKHILSLALGSLLVSTLS---AEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLN 57
MK H + L++++S AE+DG + + YQ A Q + N G Q + + +
Sbjct: 1 MKNHSFKKTIALSLLASMSLCNAEEDGAFFVIDYQTSLARQELKN-PGFTQAQELKQLIR 59
Query: 58 NLLTRYSTLNTLIKLSADPSAINAVRENLGASTKNLIGDKANSPAYQAVFLAINAAVGLW 117
+ R T SA P ++ + LG TK L+ + + Q A V L
Sbjct: 60 DGAVRLQT-------SAIP--LSYYLDILGNKTKTLLSESLKNNPQQPNGQPNQALVNLE 110
Query: 118 NTIG 121
++G
Sbjct: 111 QSLG 114
>ref|NP_224112.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 388
Score = 107 bits (266), Expect = 1e-24
Identities = 94/319 (29%), Positives = 126/319 (39%), Gaps = 111/319 (34%)
Query: 504 KVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQT 563
KVP+ Q+ P +P + N +N S + T GRN
Sbjct: 104 KVPDGQT-GGCQPASGTPGTPGYTKANCVVNWTSRTMLSTNKDIPGRNQ----------- 151
Query: 564 NNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHA-FIKSSFFNSAS---------DV 613
M G+G+ GYK F G+KR +G RYYGFFDY H F S N+ S D+
Sbjct: 152 ---PMYGLGVMTGYKHFVGKKRWFGLRYYGFFDYGHTNFSNSRAANAISPFYLSDQKADM 208
Query: 614 WTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE------------- 660
+TYGFG D L+N I+ K + G F G+ AG +W N+
Sbjct: 209 YTYGFGTDMLFNVIDKP---------KATAGFFVGVNFAGNTWTNNRVGYFKDGYVYGVN 259
Query: 661 -----YVNLA------------------TVNNVY-----NAKMNVANFQFLFNMGVRMNL 692
Y+ A N+VY NAK+N FQFL N+G+R N+
Sbjct: 260 TDADAYMTNADGTITCGDTTPASCNVGINPNSVYTTGKLNAKVNHTIFQFLVNVGIRTNI 319
Query: 693 ARSKKKGSDHAAQHGIELGLKIPTI--------------------NTNYYSFMGAELKY- 731
HGIE G+KIPT+ N N + GAE +
Sbjct: 320 FE----------HHGIEFGIKIPTLPNYFFKGSTTIRAKKQGPLENGNPTTITGAETNFS 369
Query: 732 -----RRLYSVYLNYVFAY 745
RR YS+YL YV+ +
Sbjct: 370 LTQTLRRQYSMYLRYVYTF 388
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 105 bits (261), Expect = 5e-24
Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 40/259 (15%)
Query: 508 AQSLQNVVSKKNNPY----SPQGIETNYYLNQNSYNQIQTINQELGR--NPFRKVGIVNS 561
AQ+L+ + NP + + +E + +QNS + +++ ++ + N + +
Sbjct: 132 AQALEKMQEPITNPLELVENLKNLELQFSQSQNS--MLSSLSSQIAQISNSLNALDPSSY 189
Query: 562 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY---NHAFIKSSFFN-SASDVWTYG 617
N +M G+G+ VGYK FF +K+ G RYY F+DY N F+ + F + YG
Sbjct: 190 SKNVSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYG 249
Query: 618 FGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE----YVNLATVNNV--- 670
G D L+NFI++ S+G + G ALAG+SW+ S + +NN
Sbjct: 250 LGIDYLFNFIDN-------AQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTD 302
Query: 671 YNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMG---- 726
Y AKM+ + FQ N GVR+N+ R +G E+GLKIP ++Y G
Sbjct: 303 YRAKMHTSFFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLN 352
Query: 727 AELKYRRLYSVYLNYVFAY 745
A L ++RL ++YV+++
Sbjct: 353 ASLFFKRLVMFNVSYVYSF 371
Score = 27.3 bits (59), Expect = 1.4
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 16/85 (18%)
Query: 6 LSLALG-SLLVSTLSAEDDGFYTSVGYQIG--------------EAAQMVTNTKG-IQQL 49
LSL L SL +S AE++G Y SVG++ E Q ++N + I +L
Sbjct: 10 LSLFLSLSLFLSFSIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKIYKL 69
Query: 50 SDNYENLNNLLTRYSTLNTLIKLSA 74
+ + N+ ++ +N +K +A
Sbjct: 70 NQVKNEITNMPNTFNYINNALKNNA 94
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 104 bits (259), Expect = 9e-24
Identities = 90/316 (28%), Positives = 149/316 (46%), Gaps = 49/316 (15%)
Query: 453 TISALTNSIAHFGTQEQQIQQAEN--IADTLVNFKSRYSELGNTYNS--ITTALSKV--P 506
T + + N++ + +QAE + TL N + G ++ + AL K+ P
Sbjct: 77 TFNYINNALKNNAKLTPTEKQAETYYLQSTLQNIEKIVMLSGGVASNPKLVQALEKMQEP 136
Query: 507 NAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGR--NPFRKVGIVNSQTN 564
L+ V + KN +E + +QNS + +++ ++ + N + + N
Sbjct: 137 ITNPLELVENLKN-------LELQFSQSQNS--MLSSLSSQIAQISNSLNALDPSSYSKN 187
Query: 565 NGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDY---NHAFIKSSFFN-SASDVWTYGFGA 620
+M G+G+ VGYK FF +K+ G RYY F+DY N F+ + F + YG G
Sbjct: 188 VSSMYGVGLSVGYKHFFTKKKNQGFRYYLFYDYGYTNFGFVGNGFDGLGKMNNHLYGLGI 247
Query: 621 DALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE----YVNLATVNNV---YNA 673
D L+NFI++ S+G + G ALAG+SW+ S + +NN Y A
Sbjct: 248 DYLFNFIDN-------AQKHSSVGFYVGFALAGSSWVGSGLGMWVSQMDFINNYLTDYRA 300
Query: 674 KMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMG----AEL 729
KM+ + FQ N GVR+N+ R +G E+GLKIP ++Y G A L
Sbjct: 301 KMHTSFFQIPLNFGVRVNVDR----------HNGFEMGLKIPLAVNSFYETHGKGLNASL 350
Query: 730 KYRRLYSVYLNYVFAY 745
++RL ++YV+++
Sbjct: 351 FFKRLVMFNVSYVYSF 366
Score = 29.3 bits (64), Expect = 0.38
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 2 KKHILSLALGSLLVSTLSAEDDGFYTSVGYQIG--------------EAAQMVTNTKG-I 46
+K +LSL+L L +S AE++G Y SVG++ E Q ++N + I
Sbjct: 4 QKTLLSLSL--LFLSYCIAEENGAYASVGFEYSISHAVEHNNPFLNQERIQTISNAQNKI 61
Query: 47 QQLSDNYENLNNLLTRYSTLNTLIKLSA 74
+L+ + N+ ++ +N +K +A
Sbjct: 62 YKLNQVKNEITNMPNTFNYINNALKNNA 89
>ref|NP_222795.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 255
Score = 100 bits (250), Expect = 1e-22
Identities = 79/254 (31%), Positives = 118/254 (46%), Gaps = 43/254 (16%)
Query: 515 VSKKNNPYSPQGIETNYYLNQN-----SYNQIQTINQELGRN----PFRKVGIVNSQTNN 565
+++K+ + G + + NQN S N IN + N P ++ V + N
Sbjct: 16 MAEKSGAFLGGGFQYSNLENQNTTRTPSANNNTPINTSMFGNNQAAPAQETPSVINTNNY 75
Query: 566 GAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFI-----KSSFFNSASDV--WTYGF 618
G M G+ GYK FFG+ +++G R YG++ YNHA + K + AS V +TYG
Sbjct: 76 GQMYGVDAMAGYKWFFGKTKRFGFRTYGYYSYNHANLSFVGSKLGIMDGASQVNNFTYGV 135
Query: 619 GADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWL--NSEYV--NLATVNNV--YN 672
G DALYNF K G N + GLF G L G S++ Y+ + NN +
Sbjct: 136 GFDALYNFYESKE----GYN---TAGLFVGFGLGGDSFIVQGESYLKSQMQICNNTAGCS 188
Query: 673 AKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMG----AE 728
A MN + FQ G R N ++ GIE+G K+P +Y G +
Sbjct: 189 ASMNTSYFQMPVEFGFRSNFSK----------HSGIEVGFKLPLFTNQFYKERGVDGSVD 238
Query: 729 LKYRRLYSVYLNYV 742
+ Y+R +S+Y NY+
Sbjct: 239 VFYKRNFSIYFNYM 252
>ref|NP_223027.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 245
Score = 100 bits (249), Expect = 1e-22
Identities = 59/197 (29%), Positives = 102/197 (50%), Gaps = 18/197 (9%)
Query: 551 NPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYN-HAFIKSSFFNS 609
N + V TN G+ NGIG+ +GY FF + G RY+ F D+ + +
Sbjct: 65 NVMTSINSVKKLTNMGS-NGIGLVMGYNHFFHPDKVLGLRYFAFLDWQGYGMRYPKGYYG 123
Query: 610 ASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSW-LNSEYVNLATVN 668
+++ TYG G DA++NF +F + + +G+FGGIA+AG SW + ++ L +
Sbjct: 124 GNNMITYGVGVDAIWNFFQG---SFYQDDIGVDIGVFGGIAIAGNSWYIGNKGQELLGIT 180
Query: 669 NVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAE 728
N ++ ++ +FQFLFN G + +H E+G K PT+N YY+ +
Sbjct: 181 N--SSAVDNTSFQFLFNFGFKALFVD----------EHEFEIGFKFPTLNNKYYTTDALK 228
Query: 729 LKYRRLYSVYLNYVFAY 745
++ RR+++ Y+ Y + +
Sbjct: 229 VQMRRVFAFYVGYNYHF 245
>ref|NP_224080.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 248
Score = 97.8 bits (242), Expect = 9e-22
Identities = 70/209 (33%), Positives = 101/209 (47%), Gaps = 56/209 (26%)
Query: 570 GIGIQVGYKQFFGQKRKWGARYYGFFDYNH---------------AFIKSSFFNSAS--- 611
G G +VGYKQFFG+K+ +G RYYGFFDY H FI +SF +
Sbjct: 57 GPGFEVGYKQFFGKKKWFGMRYYGFFDYAHNRFGVMKKGIPVGESGFIYNSFSFGGNTLT 116
Query: 612 -----------DVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSE 660
+++TYG G D L+NF+N + G GI LAG SW S
Sbjct: 117 ERDSYQGQYYINLFTYGVGLDTLWNFVN---------KENMVFGFVVGIQLAGDSWATSI 167
Query: 661 YVNLAT-VNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINT 719
+ + V + N+ + ANFQFL+ GVR ++ A + +ELG+K+PTI T
Sbjct: 168 SKEIGSYVKHHSNSSYSPANFQFLWKFGVRTHI----------AIHNSLELGIKVPTI-T 216
Query: 720 NYYSFMGAELKY------RRLYSVYLNYV 742
+ F+ E Y RR+Y+ ++Y+
Sbjct: 217 HRLFFITNEKGYTLQADVRRVYAFQISYL 245
>ref|NP_222838.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 286
Score = 96.3 bits (238), Expect = 3e-21
Identities = 66/207 (31%), Positives = 96/207 (45%), Gaps = 40/207 (19%)
Query: 557 GIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFN-------- 608
G+ N Q A+NG G VGYK FF + ++G RYYGFFD+ ++ K +N
Sbjct: 102 GLSNQQY---AINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDAR 158
Query: 609 --SASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLAT 666
S S ++ YG G D L+N + L G F G+A+ GTSW + Y
Sbjct: 159 KGSQSFMFGYGAGTDVLFN-------PAIFNRENLHFGFFLGVAIGGTSWGPTNYY-FKD 210
Query: 667 VNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMG 726
+ Y + +NFQ L N G+R+ G+ H G E+GLKI TI NYY+
Sbjct: 211 LAEEYRGSFHPSNFQVLVNGGIRL--------GTKH---QGFEIGLKIQTIRNNYYTASA 259
Query: 727 AEL--------KYRRLYSVYLNYVFAY 745
+ + R Y+ Y Y+ ++
Sbjct: 260 DNVPEGTTYRFTFHRPYAFYWRYIVSF 286
>ref|NP_224150.1| putative OUTER MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 242
Score = 90.1 bits (222), Expect = 2e-19
Identities = 65/215 (30%), Positives = 95/215 (43%), Gaps = 52/215 (24%)
Query: 562 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAF---IKSSFFNSAS------- 611
Q N + G +GY+ FF ++ +G R YGFFDY HA +K+ +NS +
Sbjct: 49 QATNATIKGFDALLGYQFFF--EKHFGLRLYGFFDYAHANSIKLKNPNYNSEAAQVASQI 106
Query: 612 --------------------DVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIAL 651
++ TYG D + N IN N +SLG FGGI L
Sbjct: 107 LGKQEINRLTNIADPRTFEPNMLTYGGAMDVMVNVIN---------NGIMSLGAFGGIQL 157
Query: 652 AGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELG 711
AG SWL + + +FQFLFN+G R+ + + IE G
Sbjct: 158 AGNSWLMATPSFEGILVEQALVSKKATSFQFLFNVGARLRILK----------HSSIEAG 207
Query: 712 LKIPTINTN-YYSFMGAELKYRRLYSVYLNYVFAY 745
+K P + N Y + ++ +RR+YS Y+NYVF +
Sbjct: 208 VKFPMLKKNPYITAKNLDIGFRRVYSWYVNYVFTF 242
>ref|NP_223363.1| Outer membrane protein/porin [Helicobacter pylori J99]
Length = 270
Score = 85.5 bits (210), Expect = 4e-18
Identities = 75/263 (28%), Positives = 110/263 (41%), Gaps = 63/263 (23%)
Query: 527 IETNYYL-----NQNSYNQIQTINQELGRNPFRKVGIVN---------SQTNNGAMNGIG 572
I TNY L N N YN +G P N S+ NGA+NG G
Sbjct: 27 IGTNYQLGQARLNSNIYNTGDCTGSVVGCPPGLTANKHNPGGTNINWHSKYANGALNGFG 86
Query: 573 IQVGYKQFFGQK-----RKW-GARYYGFFDYNHAFIKSSFF---NSASDVWTYGFGADAL 623
+ VGYK+FF K KW G R YG FDY HA + + D+ ++G G+D L
Sbjct: 87 LNVGYKKFFQFKSLDMTSKWFGFRVYGLFDYGHADLGKQVYAPNKIQLDMVSWGVGSDLL 146
Query: 624 YNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNS------EYV-----------NLAT 666
+ I+ + S G+FGG+A+ G +W +S E +
Sbjct: 147 ADIID---------KDNASFGIFGGVAIGGNTWKSSAANYWKEQIIEAKGPDVCTPTYCN 197
Query: 667 VNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSF-- 724
N Y+ + FQ N GVR N+ + +G+E G+++P + + S
Sbjct: 198 PNAPYSTNTSTVAFQVWLNFGVRANIYK----------HNGVEFGVRVPLLINKFLSAGP 247
Query: 725 MGAELKY--RRLYSVYLNYVFAY 745
L Y +R YS+YL Y + +
Sbjct: 248 NATNLYYHLKRDYSLYLGYNYTF 270
Score = 33.5 bits (75), Expect = 0.020
Identities = 16/36 (44%), Positives = 22/36 (60%)
Query: 1 MKKHILSLALGSLLVSTLSAEDDGFYTSVGYQIGEA 36
MKK + L ++L S+L AE DG Y YQ+G+A
Sbjct: 1 MKKFVALGLLSAVLSSSLLAEGDGVYIGTNYQLGQA 36
>ref|NP_223299.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 307
Score = 73.2 bits (178), Expect = 2e-14
Identities = 68/247 (27%), Positives = 99/247 (39%), Gaps = 53/247 (21%)
Query: 535 QNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGI--GIQVGYKQFFGQKRKWGARYY 592
QN+ N ++ N+ I N NG GI + +GYK F G+KR G R+
Sbjct: 74 QNALNAVKDSNK-----------IANRFAGNGGSGGIFNELSLGYKYFLGKKRIIGFRHS 122
Query: 593 GFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATN-----------------FL 635
FF Y + S + YGF D L N+ NDK +
Sbjct: 123 LFFGYQLGGVGSVPGSGLIAFLPYGFNTDLLINWTNDKRASQEYVERRVKGLSIFYKDMT 182
Query: 636 GKNN-------------KLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQF 682
G+ + S GL G+ L ++W S NL N V + + FQ
Sbjct: 183 GRTLDADTLKRASRHIIRKSSGLVIGMELGASTWFASN--NLTPFNQVKSRTI----FQL 236
Query: 683 LFNMGVRMNLAR---SKKKGSDHAAQHGIELGLKIPTINTNYYSF-MGAELKYRRLYSVY 738
GVR + + ++ +ELG+K+P NYYS G +L Y+R+ SVY
Sbjct: 237 QGKFGVRFSSDEYDIDRYGDENYLGGSSVELGVKVPAFKVNYYSDDYGDKLDYKRVVSVY 296
Query: 739 LNYVFAY 745
LNY + +
Sbjct: 297 LNYTYNF 303
>ref|NP_223142.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 186
Score = 70.9 bits (172), Expect = 1e-13
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 44/177 (24%)
Query: 570 GIGIQVGYKQFFGQKRKW-GARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFIN 628
G+ ++G F G KW GAR YGF D+ F S ++ +++ TYG G D + N I
Sbjct: 53 GLNFKLG---FVGFANKWFGARVYGFLDW---FNTSGTEHTKTNLLTYGGGGDLIVNLI- 105
Query: 629 DKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGV 688
+K +LGL GG+ LAG +W+ + +N FQFL+N+G
Sbjct: 106 --------PLDKFALGLIGGVQLAGNTWM-------------FPYDVNQTRFQFLWNLGG 144
Query: 689 RMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
RM + D +A E G+K P +N ++ R YS Y++YVF +
Sbjct: 145 RMRV-------GDRSA---FEAGVKFPMVNQG-----SKDVGLIRYYSWYVDYVFTF 186
>ref|NP_223757.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 277
Score = 68.2 bits (165), Expect = 7e-13
Identities = 75/284 (26%), Positives = 120/284 (41%), Gaps = 67/284 (23%)
Query: 507 NAQSLQNVVSKKN---------NPYSPQGIETNYYLN---QNSYNQIQTINQELGRNPFR 554
NA+S ++V++K + +P + +YL Q Q + N L + F
Sbjct: 16 NAESFKDVLTKGDYTFFNKKVVSPIKRYADRSAFYLGLGYQLGSIQHNSSNLNLSQR-FN 74
Query: 555 KVGIVNSQT------NNGAMNGIGIQVGYKQFFG--QKRKWGARYYGFFDYNHAFIKSSF 606
K I+ S + N+ NG+G+QVGYK + G ++ KW +G F A + S
Sbjct: 75 KSQIIFSDSLSPVFKNSYVSNGLGVQVGYK-WVGKHEETKWFGFRWGLFYDLSASLYGSQ 133
Query: 607 FNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGT-SWLNSEYVNLA 665
+ + + TYG D L N N +K G GIA AG L+ +
Sbjct: 134 ESQSIIISTYGTYMDLLLNAYN---------GDKFFAGFNLGIAFAGVYDRLSDALLYQT 184
Query: 666 TVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFM 725
+ N + K+N+ FQFL ++GVR+ G++H + G+KIPT N+Y M
Sbjct: 185 LLQNTFGGKVNLNGFQFLVDLGVRL--------GNEH---NQFGFGIKIPTYYFNHYYSM 233
Query: 726 G------------------------AELKYRRLYSVYLNYVFAY 745
++ +RR YSVY NY +++
Sbjct: 234 NNISNNSENVLKVLRFLEYGINSLLYQVDFRRNYSVYFNYTYSF 277
>ref|NP_224064.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 744
Score = 55.1 bits (131), Expect = 6e-09
Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 29/255 (11%)
Query: 479 DTLVNFKSRYSELGNTYNSITTALSKVP------NAQSLQNVVSKKNNP--YSPQGIETN 530
D FK + G+ NSI T S+VP + Q ++ + P ++ +TN
Sbjct: 479 DVCSRFKDKPYTAGSYPNSIYTDCSQVPAGLIGVTSAVWQQLIDQNALPVDFTNLSSQTN 538
Query: 531 YY---LNQNSY--NQIQTINQELGRNPFRKVGIVNSQTNN---GAMNGIGIQVGYKQFFG 582
Y LN + + I+Q L + S+T+ + G+ +++GY+++F
Sbjct: 539 YLNASLNTQDFATTMLSAISQSLSSSKSSATTYRTSKTSRPFGAPLLGVNLKMGYQKYFN 598
Query: 583 QKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFI----NDK--ATNFLG 636
G YG YN+A + S YG G D L++FI N+K +N
Sbjct: 599 DYL--GLSSYGIIKYNYAQANNEKIQQLS----YGVGMDVLFDFITNYTNEKNPKSNLTK 652
Query: 637 KNNKLSLGLFGGI-ALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARS 695
K SLG+FGG+ L + +L ++Y +N + ++ + V + +S
Sbjct: 653 KVFTSSLGVFGGLRGLYNSYYLLNQYKGSGNLNVTGGLNYRYKHSKYSIGISVPLVQLKS 712
Query: 696 KKKGSDHAAQHGIEL 710
+ SD A + I L
Sbjct: 713 RIVSSDGAYTNSITL 727
>ref|NP_223450.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 278
Score = 50.4 bits (119), Expect = 2e-07
Identities = 53/217 (24%), Positives = 78/217 (35%), Gaps = 62/217 (28%)
Query: 560 NSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFI----------------- 602
+S+ N + + GYKQFF +K +G R+Y DY + F
Sbjct: 93 HSKYRNIPFAEVSLIYGYKQFFPKKEHYGFRFYVSLDYAYGFFLKNKGALGDSLRASSQI 152
Query: 603 ----------KSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLG-LFGGIAL 651
K +F N+ YG GAD LY K + G L G+
Sbjct: 153 PKSYREKLQRKETFINAI----FYGVGADFLY---------------KRAFGTLILGVNF 193
Query: 652 AGTSWLNSEYVNLATVN---NVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGI 708
G +W + N Y M FQ + N+G R +R K I
Sbjct: 194 VGETWFYETKIFKQWAKDSLNTYRPNM----FQVMLNVGYRYRFSRYK--------NWAI 241
Query: 709 ELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
E G +IP + +Y+ L ++R SVYL + +
Sbjct: 242 EFGARIPFLINDYFKTPLYTLHFKRNISVYLTSTYDF 278
>ref|NP_223588.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 668
Score = 47.4 bits (111), Expect = 1e-06
Identities = 52/181 (28%), Positives = 75/181 (40%), Gaps = 33/181 (18%)
Query: 493 NTYNSITTALSKVP------NAQSLQNVVSKKNNP--YSPQGIETNYYLNQNSYNQIQTI 544
N NSI + VP A Q ++++ P Y+ G +TNY LN S N
Sbjct: 418 NYPNSIYHNCADVPAGFLGVTAAVWQQLINQNALPINYANLGSQTNYNLNA-SLNTQDLA 476
Query: 545 NQELGRNPFRKVGIVNSQTNNGAMN----------GIGIQVGYKQFFGQKRKWGARYYGF 594
N L + +K + +S TN+ N G+ ++GY+ +F G YYG
Sbjct: 477 NSML--STIQKTFVTSSVTNHHFSNASQSFRSPILGVNAKIGYQNYFNDFI--GLAYYGI 532
Query: 595 FDYNHAFIKSSFFNSASDVWTYGFGADALYNFI-----NDKATNFLGKNN-KLSLGLFGG 648
YN+A N +YG G D L +FI + T K N S G+FGG
Sbjct: 533 IKYNYA----KAVNQKVQQLSYGGGIDLLLDFITTYSNKNSPTGIQTKRNFSSSFGIFGG 588
Query: 649 I 649
+
Sbjct: 589 L 589
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 6/64 (9%)
Query: 13 LLVSTLSA-EDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIK 71
LL S L A E +GF+ G++ G T K + Y N L T +T++K
Sbjct: 9 LLFSALEANEKNGFFIEAGFETGLLEGTQTQEKRHTTTKNTYATYNYLPT-----DTILK 63
Query: 72 LSAD 75
+A+
Sbjct: 64 RAAN 67
>ref|NP_223367.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 657
Score = 47.4 bits (111), Expect = 1e-06
Identities = 52/181 (28%), Positives = 75/181 (40%), Gaps = 33/181 (18%)
Query: 493 NTYNSITTALSKVP------NAQSLQNVVSKKNNP--YSPQGIETNYYLNQNSYNQIQTI 544
N NSI + VP A Q ++++ P Y+ G +TNY LN S N
Sbjct: 407 NYPNSIYHNCADVPAGFLGVTAAVWQQLINQNALPINYANLGSQTNYNLNA-SLNTQDLA 465
Query: 545 NQELGRNPFRKVGIVNSQTNNGAMN----------GIGIQVGYKQFFGQKRKWGARYYGF 594
N L + +K + +S TN+ N G+ ++GY+ +F G YYG
Sbjct: 466 NSML--STIQKTFVTSSVTNHHFSNASQSFRSPILGVNAKIGYQNYFNDFI--GLAYYGI 521
Query: 595 FDYNHAFIKSSFFNSASDVWTYGFGADALYNFI-----NDKATNFLGKNN-KLSLGLFGG 648
YN+A N +YG G D L +FI + T K N S G+FGG
Sbjct: 522 IKYNYA----KAVNQKVQQLSYGGGIDLLLDFITTYSNKNSPTGIQTKRNFSSSFGIFGG 577
Query: 649 I 649
+
Sbjct: 578 L 578
Score = 24.6 bits (52), Expect = 9.3
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 6/64 (9%)
Query: 13 LLVSTLSA-EDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIK 71
LL S L A E +GF+ G++ G T K + Y N L T +T++K
Sbjct: 9 LLFSALEANEKNGFFIEAGFETGLLEGTQTQEKRHTTTKNTYATYNYLPT-----DTILK 63
Query: 72 LSAD 75
+A+
Sbjct: 64 RAAN 67
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 45.1 bits (105), Expect = 7e-06
Identities = 47/195 (24%), Positives = 80/195 (40%), Gaps = 31/195 (15%)
Query: 548 LGRNPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFF 607
+ NP+ K ++++ + + G++ GY+++F R+YG +Y +K
Sbjct: 125 INANPYEKFELLSNIQASPLL--YGLRSGYQKYFANGIS-ALRFYG--EYLGGAMKGFKS 179
Query: 608 NSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATV 667
+S + T D L + DK F +LG+FGG+ G W N Y NL +
Sbjct: 180 DSLASYQTASLNIDLLMDKPIDKEKRF-------ALGIFGGV---GVGW-NGMYQNLKEI 228
Query: 668 NNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA 727
F + N+GV M L +H EL LK+P + +F+
Sbjct: 229 RGYSQPNA----FGLVLNLGVSMTL----------NLKHRFELALKMPPLKETSQTFL-Y 273
Query: 728 ELKYRRLYSVYLNYV 742
K +Y + NY+
Sbjct: 274 YFKSTNIYYISYNYL 288
>ref|NP_224132.1| putative [Helicobacter pylori J99]
Length = 211
Score = 43.5 bits (101), Expect = 2e-05
Identities = 40/185 (21%), Positives = 82/185 (43%), Gaps = 32/185 (17%)
Query: 562 QTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGAD 621
+T GA +G ++ ++ + +RYY F DY + + + ++++TYGFG D
Sbjct: 54 RTIEGASFSLGWEINPTNYW-----FYSRYYFFMDYGNVILNKRT-GAQANMFTYGFGGD 107
Query: 622 ALYNFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVN---NVYNAKMNVA 678
+ + KN LF G+ +A +W S++ ++ ++ + +
Sbjct: 108 LIMEY---------NKNPLYVFSLFYGMQVAENTWTISKHSANFIIDDWRSIQGFSLKTS 158
Query: 679 NFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVY 738
NF+ L +G + S IE+G+K P ++F + + RL+SV+
Sbjct: 159 NFRMLGLVGFKFQTVLFHHDAS-------IEVGIKWP------FAF-EYDSPFVRLFSVF 204
Query: 739 LNYVF 743
+++ F
Sbjct: 205 ISHTF 209
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 42.4 bits (98), Expect = 4e-05
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 570 GIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFI-- 627
G+ +++GY+ +F G YYG YN+A S YG G D L++FI
Sbjct: 595 GVNVKIGYQHYFNDYI--GLAYYGIIQYNYAQANDEKIQQLS----YGGGMDVLFDFITT 648
Query: 628 --NDKATNFLGKNNKLSLGLFGGI 649
N K + K S G+FGG+
Sbjct: 649 YTNKKQDHPTKKVFASSFGVFGGL 672
>ref|NP_223751.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 220
Score = 38.1 bits (87), Expect = 8e-04
Identities = 47/184 (25%), Positives = 74/184 (39%), Gaps = 39/184 (21%)
Query: 569 NGIGIQVGYKQFFGQKRKW----GARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALY 624
NG G+ +G K F K + G RY F+D +F + S + TYG L+
Sbjct: 69 NGFGVVLGGK--FVAKTQAVEHVGFRYGLFYD-------QTFSSHKSYISTYGLEFSGLW 119
Query: 625 NFINDKATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLF 684
+ N K+ LGL G+ +AG +++ ++ Y K N + FQ L
Sbjct: 120 DAFNSP---------KMFLGLEFGLGIAGATYMPGGAMHGIIAQ--YLGKEN-SLFQLLV 167
Query: 685 NMGVRMNLARSKKKGSDHAAQHGIELGLKIPTI---NTNYYSFMGAELKYRRLYSVYLNY 741
+G R ++ I GLK P I T + A ++RL Y NY
Sbjct: 168 KVGFRFGFFHNE-----------ITFGLKFPVIPNKKTEIVDGLSATTLWQRLPVAYFNY 216
Query: 742 VFAY 745
++ +
Sbjct: 217 IYNF 220
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 32.3 bits (72), Expect = 0.045
Identities = 67/322 (20%), Positives = 107/322 (32%), Gaps = 55/322 (17%)
Query: 104 QAVFLAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFN-DQPGQDSTQITCNRFESTGP 162
QAVF + + G N + GN + T S + FN D Q++ IT
Sbjct: 837 QAVFNVLYSR-GTSNFNATTQLLGNTSFTLSSQSLLNFNGDTTLQNNANITLGNKSQAAF 895
Query: 163 GKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQF 222
S+++D N + Q++ N +G + N + + NGG
Sbjct: 896 KNSLTLDN----NSNLSLDNQSVLNANGTSAFNNQASLNIYNGSQAAFSSLFFNGGTLSL 951
Query: 223 CKAKNGSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFDITNNAE-------- 274
++S N + S + T D V ++ A + F + A+
Sbjct: 952 -----NANSKLNASSASFSNNTTINLDDSVLNANNTSSLNANINFQGASQADFGGNTTID 1006
Query: 275 ------------QLLNQAANIMQVLNTQCP-LVRSTNNENTPGGGQPWGLSTSGNA---- 317
N AN N P L ++ N + GQ + L +G+
Sbjct: 1007 TASFNFDSASSLNFNNLTANGALNFNGYAPSLTKALMNVS----GQ-FVLGNNGDINLSD 1061
Query: 318 CSIFQQEFSQVTSMIKNAQEIIAQ--------------SKIVSENAQNQNNLDTGKPFNP 363
+IF VT I NAQ+ I KI + + NN+ T NP
Sbjct: 1062 INIFDNITKSVTYNILNAQKGITGISGANGYEKILFYGMKIQNATYSDNNNIQTWSFINP 1121
Query: 364 YTDASFAQSMLKNAQAQAEMFN 385
+ Q +KN E+ N
Sbjct: 1122 LNSSQIIQESIKNGDLTIEVLN 1143
Score = 28.9 bits (63), Expect = 0.49
Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Query: 635 LGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNL-A 693
L N+ LSL + GTS N N A++N +YN A F LF G ++L A
Sbjct: 901 LDNNSNLSLDNQSVLNANGTSAFN----NQASLN-IYNGSQ--AAFSSLFFNGGTLSLNA 953
Query: 694 RSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYR 732
SK S + + + L +N N S + A + ++
Sbjct: 954 NSKLNASSASFSNNTTINLDDSVLNANNTSSLNANINFQ 992
Score = 27.3 bits (59), Expect = 1.4
Identities = 17/44 (38%), Positives = 23/44 (51%), Gaps = 6/44 (13%)
Query: 599 HAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLS 642
H F K+S++ +DV G D N + DK F+G NN LS
Sbjct: 2308 HYFNKNSYYFVIADV-----GRDLFINSMGDKMVRFIG-NNTLS 2345
>ref|NP_222995.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2902
Score = 31.6 bits (70), Expect = 0.076
Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 30/206 (14%)
Query: 127 GNGNGTESGPGSVIFNDQPGQDS--------TQITCNRFESTGPGKSMSIDEFKKLNEAY 178
GN GT G ++IFN G DS TQ + S+ + ++D + LN
Sbjct: 730 GNRIGT-GGAANLIFN---GVDSINIANATITQHNAGAYSSSMTFSTQNMDNSQNLN-GL 784
Query: 179 QIIQQALKNQSGFPELGGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNG 238
+ L + F +G K N + + NGG YQF S+++ +G
Sbjct: 785 NSNGKLLVYGTTFTNQAKDG-KFIFNAGQATFENTNFNGGSYQFSGDSLNFSNNNQFNSG 843
Query: 239 S----STQTTATTTQDGVTITTTYNNNKATVKF--DITNNAEQLLNQAANIMQVLNTQCP 292
S + T + + +NN+ AT F D T NA L A N +
Sbjct: 844 SFEIGAKNTIFNNANFNNSTSFNFNNSSATTSFVGDFT-NANSNLQIAGNAV-------- 894
Query: 293 LVRSTN-NENTPGGGQPWGLSTSGNA 317
STN ++NT ++ +GNA
Sbjct: 895 FGNSTNGSQNTANFNNTGSVNIAGNA 920
Score = 28.9 bits (63), Expect = 0.49
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 25/124 (20%)
Query: 195 GGNGTKVSVNYNYECRQTADINGGVYQFCKAKNGSSSSSNGGNGSSTQTTATTTQDGVTI 254
GGNGT +N Y+ + I GG + +G NG+ + A G+
Sbjct: 2647 GGNGTLYGLNVGYDRLVKSVILGGYVAY---------GYSGFNGNIMHSLANNVDVGMYA 2697
Query: 255 TTTYNNNKATVKFDIT--NNAEQLLNQAANIMQVLNTQCPLVRSTNNENTPGGGQPWGLS 312
N+ T+ + T NA +N + +++ VLN + N NT W S
Sbjct: 2698 RAFLKRNEFTLSANETYGGNASH-INSSNSLLSVLNQR-------YNYNT------WTTS 2743
Query: 313 TSGN 316
+GN
Sbjct: 2744 VNGN 2747
Score = 28.9 bits (63), Expect = 0.49
Identities = 38/166 (22%), Positives = 65/166 (38%), Gaps = 20/166 (12%)
Query: 597 YNHAFIKSSF-FNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFGGIALAGTS 655
Y++AF +S F+ A D+ L N N N KN++L G + +A
Sbjct: 1452 YDNAFSQSPITFHQALDIKVPLSLGGNLLNPNNSSVLNL--KNSQLVFSDQGSLNIANID 1509
Query: 656 WLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLK-- 713
L+ N V N+ A MN ++ + G+R+N K ++ + + LK
Sbjct: 1510 LLSDLNGNKNRVYNIIQADMNGNWYERINFFGMRINDGIYDAKNQTYSFTNPLNNALKIT 1569
Query: 714 --------------IPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
IP I Y+ Y+++Y+ N V++Y
Sbjct: 1570 ESFKNNQLSVTLSQIPGIKNTLYNIGSEIFNYQKVYN-NANGVYSY 1614
Score = 26.2 bits (56), Expect = 3.2
Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 471 IQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQ----- 525
+ Q I +TL N S YN+ S +AQ + + S Y+P
Sbjct: 1581 LSQIPGIKNTLYNIGSEIFNYQKVYNNANGVYSYSDDAQGVFYLTSSVKGYYNPNQSYQA 1640
Query: 526 GIETNYYLNQNSYNQIQTINQELGR--NPFRKVGIVNSQTNNGAMNGIG 572
N N N ++ I+Q NP + + N N + +G
Sbjct: 1641 SGSNNTTKNNNLTSESSVISQTYNAQGNPISALHVYNKGYNFSNIKALG 1689
Score = 25.0 bits (53), Expect = 7.1
Identities = 50/260 (19%), Positives = 91/260 (34%), Gaps = 40/260 (15%)
Query: 29 VGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIKLSADPSAINAVRENLGA 88
VG ++G A T T + L+ N +N+ ++ Y T + + IN+V N
Sbjct: 183 VGNRVGSGAGTHTGTATLN-LNANKVTINSNISAYKTSQVNVGNANSVITINSVSLN--- 238
Query: 89 STKNLIGDKANSPAYQAVFLAINAAVGLWNTIGYAVMCGNGNGTESGPGSVIFNDQPGQD 148
GD +S A +G C + S G+ + +
Sbjct: 239 ------GDTCSSLA----------------RVGVGANCSTSGPSYSFKGTTNATNTTFSN 276
Query: 149 STQITCNRFESTGPGKSMSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNYNYE 208
S+ +T G ++ F N+ + N F G + ++N
Sbjct: 277 SSGSFTFEENATFSGAKLNGGAFT-FNKKFNATNNTAFNSGSFTFKGTS------SFN-- 327
Query: 209 CRQTADINGGVYQFCKAKNGSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNNKATVKFD 268
A+ + Y F +SS NGG + T +TQ ++++ + T+K
Sbjct: 328 ---GANFSNASYTFNNQATFQNSSFNGGTFTFNDQTNQSTQHPQIQNSSFSGSATTLKGF 384
Query: 269 ITNNAEQLLNQAANIMQVLN 288
T EQ N + + + + N
Sbjct: 385 AT--FEQAFNNSNHQLTIQN 402
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 29.3 bits (64), Expect = 0.38
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 17/167 (10%)
Query: 322 QQEFSQVT--SMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQA 379
++E+S V S++K E + K + N+ N FN ++ Q+++KNA+
Sbjct: 104 EEEYSSVAVNSVVKKVIEEVRDQKPYLASLINKPN-----EFNSEIESIMQQNLIKNAKL 158
Query: 380 QAEMFNLSEQVKKNLEVMKNNNNVNEKLAGFGKE---EVMTNFVSAFLASCKDGGTLPNA 436
+ E NLS E NN E E+ N +S LA K+ T P A
Sbjct: 159 EIEKINLSFSKDFCAEFASLNNTQLSSGLSVNLEHGLELGINALSVILA--KNPVTRPFA 216
Query: 437 GVTSNTWGAGCAYVGETISALTNSIA-HFGTQEQQIQQAENIADTLV 482
+ + + ++ L N IA F +E++ + EN+ + V
Sbjct: 217 LILQGL----KPLLKDLLTLLPNIIASFFRNEEKERAKLENLIEVKV 259
>ref|NP_222814.1| putative [Helicobacter pylori J99]
Length = 253
Score = 29.3 bits (64), Expect = 0.38
Identities = 31/176 (17%), Positives = 64/176 (35%), Gaps = 23/176 (13%)
Query: 570 GIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFIND 629
G G + F K G R + ++Y H+ S V YG D + F++
Sbjct: 101 GFNTATGLEHFLRNHPKVGFRIFSVYNYFHSVSLSQ--PQILMVQNYGGALDFSWIFVDK 158
Query: 630 KATNFLGKNNKLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVR 689
K F + L + L G+ L T S + + FQ G
Sbjct: 159 KTYRF---RSYLGIALEQGVLLVDTIKTGSFTTIIPRTKKTF--------FQAPLRFGFI 207
Query: 690 MNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
+ D ++LG+++P + +Y++ + +++ ++ L+ + ++
Sbjct: 208 V----------DFIGYLSLQLGIEMPLVRNVFYTYNNHQERFKPRFNANLSLIVSF 253
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 28.9 bits (63), Expect = 0.49
Identities = 42/203 (20%), Positives = 78/203 (37%), Gaps = 29/203 (14%)
Query: 314 SGNACSIFQQEFSQVTSMIKNAQEIIAQSKIVSENAQNQNNLDTGKPFNPYTDASFAQSM 373
+GN + Q + S+ K + +K + + N+N ++ N D FA +
Sbjct: 605 TGNYDEVKQAQKDLEKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFAL-I 663
Query: 374 LKNAQAQAEMFNLSEQVKK-NLEVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDGGT 432
K A A ++ +K E+ N+N+ L F K K+G
Sbjct: 664 NKEANRDARAIAYAQNLKGIKRELSDKLENINKDLKDFSKS----------FDEFKNGKN 713
Query: 433 LPNAGVTSNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENIADTLVNFKSRYSELG 492
+ ET+ AL S+ G + I + EN+ L FK+ ++
Sbjct: 714 ------------KDFSKAEETLKALKGSVKDLGINPEWISKVENLNAALNEFKNGKNK-- 759
Query: 493 NTYNSITTALSKVPNAQSLQNVV 515
++ +T A S + N S+++V+
Sbjct: 760 -DFSKVTQAKSDLEN--SIKDVI 779
>ref|NP_222990.1| putative [Helicobacter pylori J99]
Length = 523
Score = 28.1 bits (61), Expect = 0.84
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 18 LSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRYSTLNTLIKLSAD 75
L E++G SV YQ A M +K + ++ + + N+ Y+T + L+K+ AD
Sbjct: 454 LMPENNGIKISVWYQTNSYATMSLRSKIVAEIVEAFLKEENIHIAYTT-SKLLKVDAD 510
>ref|NP_224067.1| conserved lipoprotein [Helicobacter pylori J99]
Length = 175
Score = 27.3 bits (59), Expect = 1.4
Identities = 23/83 (27%), Positives = 36/83 (42%), Gaps = 1/83 (1%)
Query: 10 LGSLLVSTLSAEDDGFYTSVGYQIGEAAQMVTNTKGIQQLSDNYENLNNLLTRY-STLNT 68
L + L STL + + T G+ + T+T+ I QL D + +L RY
Sbjct: 93 LAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRV 152
Query: 69 LIKLSADPSAINAVRENLGASTK 91
+ + D ++ VRE LG K
Sbjct: 153 FVLVGLDKQIVDKVREELGMVKK 175
>ref|NP_223662.1| putative [Helicobacter pylori J99]
Length = 668
Score = 27.3 bits (59), Expect = 1.4
Identities = 32/142 (22%), Positives = 57/142 (39%), Gaps = 9/142 (6%)
Query: 465 GTQEQQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKK-----N 519
G +++ Q+ ENIA T Y+ + S ++ PN+ S N ++ K +
Sbjct: 141 GVSKEEYQKLENIAQTKAANDPMYANTPFSNGSDSSFYDNNPNSPS-NNAINGKDGANGS 199
Query: 520 NPYSPQGIE-TNYYLNQNSYNQIQTINQELGRNPFRKVGIVNSQTNNGAMNGIGIQV-GY 577
N Y G + N N N + N +G + G++ NG+ + G V GY
Sbjct: 200 NGYGANGNDGVNGISGSNGANGSHSNNNAIG-SGIDTDGVLGVDGVNGSSSSSGGSVGGY 258
Query: 578 KQFFGQKRKWGARYYGFFDYNH 599
+ F G+ ++N+
Sbjct: 259 ENNFTNHGSTNNNTGGYDNFNN 280
Score = 26.2 bits (56), Expect = 3.2
Identities = 16/51 (31%), Positives = 20/51 (38%)
Query: 211 QTADINGGVYQFCKAKNGSSSSSNGGNGSSTQTTATTTQDGVTITTTYNNN 261
QT N +Y NGS SS N +S A +DG + Y N
Sbjct: 155 QTKAANDPMYANTPFSNGSDSSFYDNNPNSPSNNAINGKDGANGSNGYGAN 205
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 27.3 bits (59), Expect = 1.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 334 NAQEIIAQSKIVSENAQNQNNLDTGKPF---NPYTDASFAQSMLKNAQAQ 380
NAQE+I +S ++ + Q Q + KPF N + LK QA+
Sbjct: 2 NAQELIKKSTLIEKVLQEQGLQEKAKPFMSDNAVIKTEELEKTLKEMQAE 51
>ref|NP_223274.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 3194
Score = 26.9 bits (58), Expect = 1.9
Identities = 17/44 (38%), Positives = 22/44 (49%), Gaps = 6/44 (13%)
Query: 599 HAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLS 642
H F +S+F + G G D L N + DK F+G NN LS
Sbjct: 3103 HYFNTNSYFYAIG-----GVGRDLLVNSMGDKLVRFIG-NNTLS 3140
>ref|NP_223799.1| UDP-N-ACETYLGLUCOSAMINE--N-ACETYLMURAMYL-(PENTAPEPTIDE)
PYROPHOSPHORYL-UNDECAPRENOL N-ACETYLGLUCOSAMINE
TRANSFERASE [Helicobacter pylori J99]
Length = 353
Score = 26.2 bits (56), Expect = 3.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 525 QGIETNYYLNQNSYNQIQTINQELG 549
QGI+ + NSY Q++ QELG
Sbjct: 203 QGIKITHICGPNSYEQVRFFYQELG 227
>ref|NP_223273.1| putative [Helicobacter pylori J99]
Length = 189
Score = 26.2 bits (56), Expect = 3.2
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 25/106 (23%)
Query: 640 KLSLGLFGGIALAGTSWLNSEYVNLATVNNVYNAKMNVANFQFLFNMGVRMNLARSKKKG 699
K S G++GG+ + N +L N+ + + LFN+G+ G
Sbjct: 107 KYSFGVYGGLGIGYFYQSN----HLGMKNSSF------MGYNGLFNVGL----------G 146
Query: 700 SDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY 745
S H +ELG KIP T SF + L SV+++ ++Y
Sbjct: 147 STIDRHHRVELGAKIPFSKTR-NSFKNSYF----LESVFIHAAYSY 187
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 26.2 bits (56), Expect = 3.2
Identities = 24/97 (24%), Positives = 36/97 (36%), Gaps = 6/97 (6%)
Query: 497 SITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELG------R 550
S T SK PN Q + N + E +++N+ Q N+ L +
Sbjct: 141 STTFTSSKHPNLQVFIEDKNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETK 200
Query: 551 NPFRKVGIVNSQTNNGAMNGIGIQVGYKQFFGQKRKW 587
+ I+ TN + IQ GYK +RKW
Sbjct: 201 EKEEETIIIGDNTNAMKIIKKDIQKGYKALKSSQRKW 237
>ref|NP_223344.1| IRON(III) DICITRATE TRANSPORT PROTEIN [Helicobacter pylori J99]
Length = 767
Score = 25.8 bits (55), Expect = 4.2
Identities = 36/139 (25%), Positives = 55/139 (38%), Gaps = 34/139 (24%)
Query: 472 QQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPY-SPQGIETN 530
Q ++NI +LVN + L NTY ++K Q+ N + + Y SP I+ N
Sbjct: 194 QNSKNIDKSLVN-----NMLFNTYLRTGGMMNKHFGIQAQVNWLKGQGFRYNSPTDIQ-N 247
Query: 531 YYLNQ----NSYNQIQTINQ----------ELGRNPFRKVGIVNSQTNNGAMNGIGIQVG 576
Y L+ N N+I Q LG + + N++ NN
Sbjct: 248 YMLDSLYQINDSNKITAFFQYYSYFLTDPGSLGIAAYNQNRFQNNRPNNDKS-------- 299
Query: 577 YKQFFGQKRKWGARYYGFF 595
G+ ++WGA Y FF
Sbjct: 300 -----GRAKRWGAVYQNFF 313
>ref|NP_223001.1| putative FLAGELLAR-HOOK ASSOCIATED PROTEIN 3 (HAP3) [Helicobacter
pylori J99]
Length = 828
Score = 25.8 bits (55), Expect = 4.2
Identities = 23/77 (29%), Positives = 39/77 (49%), Gaps = 10/77 (12%)
Query: 668 NNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGA 727
N+V+N K+N N FL ++NL G+ + +G+++ L PT + +
Sbjct: 540 NSVFNMKLNDVNGSFL---EAQINL---DNNGAFLSLPNGVKIPLYDPT-TADIQASKPN 592
Query: 728 ELKYRRL---YSVYLNY 741
E+ YR+L S+ LNY
Sbjct: 593 EVTYRQLMDAMSIALNY 609
>ref|NP_222796.1| putative [Helicobacter pylori J99]
Length = 590
Score = 25.8 bits (55), Expect = 4.2
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 329 TSMIKNAQEIIAQSKIVS-ENAQNQNNLDTGKPFNPYTDASFAQSMLKNAQAQAEMFNLS 387
T+ NA + K S N + NN DTG TD M + N +
Sbjct: 475 TTDTSNANDTPTDDKDASGNNTGDMNNTDTGNTDTGNTDTGNTDDMSNMNNGNDDTGNTN 534
Query: 388 EQVKKNLEVMKNNNNVNE 405
+ + + ++ + NN N+
Sbjct: 535 DDMGNSNDMGDDMNNAND 552
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 25.4 bits (54), Expect = 5.4
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 606 FFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSLGLFG 647
F+NS +D++TY F ++ + +K + +NK + +G
Sbjct: 844 FYNSTADIYTYFFALS--FHLLREKGFSAFITSNKYARAKYG 883
>ref|NP_223211.1| cag island protein [Helicobacter pylori J99]
Length = 208
Score = 25.4 bits (54), Expect = 5.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 397 MKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKD 429
M NNNN N+KL GF + +++ V + S D
Sbjct: 1 MINNNNNNKKLRGFFLKVLLSLVVFSSYGSAND 33
>ref|NP_223846.1| ELONGATION FACTOR TU (EF-TU) [Helicobacter pylori J99]
Length = 399
Score = 25.0 bits (53), Expect = 7.1
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 388 EQVKKNLEVMKNNNNVNEKLAGFGKEEVMTNFVSAFLASCKDGGTLPN 435
E +K LE + +NV L G KEEV V CK G P+
Sbjct: 265 EMFRKELEKGEAGDNVGVLLRGTKKEEVERGMV-----LCKPGSITPH 307
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 25.0 bits (53), Expect = 7.1
Identities = 23/81 (28%), Positives = 35/81 (42%), Gaps = 2/81 (2%)
Query: 440 SNTWGAGCAYVGETISALTNSIAHFGTQEQQIQQAENI-ADTLVNFKSRYSELGN-TYNS 497
SNT A +S I+ QEQ+I++ ENI T R E N T NS
Sbjct: 174 SNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENS 233
Query: 498 ITTALSKVPNAQSLQNVVSKK 518
+T + +A ++ + K+
Sbjct: 234 VTESKKPTQSAAAIFEDIKKE 254
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 24.6 bits (52), Expect = 9.3
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 166 MSIDEFKKLNEAYQIIQQALKNQSGFPELGGNGTKVSVNY 205
+S +FK N++ + LK P GGN + VN+
Sbjct: 218 LSYSDFKDYNKSVMTLLDDLKKVDFPPYPGGNMISIKVNF 257
>ref|NP_223381.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 305
Score = 24.6 bits (52), Expect = 9.3
Identities = 18/66 (27%), Positives = 33/66 (49%), Gaps = 7/66 (10%)
Query: 626 FINDKATNFLGKNNKLSLGL-FGGIALAGTSWLNSEYVNL---ATVN---NVYNAKMNVA 678
F+N + ++GK N+ ++GL +L+ SW N N+ T+ +V+ K
Sbjct: 240 FVNFGGSLYIGKRNRFNVGLKIPYYSLSAQSWKNFGSSNVWQQQTIRQNFSVFRNKEVFV 299
Query: 679 NFQFLF 684
++ FLF
Sbjct: 300 SYAFLF 305
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.312 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 778,805
Number of Sequences: 1491
Number of extensions: 37331
Number of successful extensions: 321
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 106
length of query: 745
length of database: 494,079
effective HSP length: 85
effective length of query: 660
effective length of database: 367,344
effective search space: 242447040
effective search space used: 242447040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)