BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644948|ref|NP_207118.1| conserved hypothetical
secreted protein [Helicobacter pylori 26695]
(79 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223023.1| putative [Helicobacter pylori J99] 153 5e-40
ref|NP_224061.1| putative Inner membrane protein [Helicobac... 30 0.009
ref|NP_223788.1| putative [Helicobacter pylori J99] 27 0.076
ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobac... 27 0.100
ref|NP_223084.1| putative [Helicobacter pylori J99] 25 0.29
ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cyt... 23 1.1
ref|NP_223025.1| putative [Helicobacter pylori J99] 23 1.4
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 23 1.4
ref|NP_224100.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223635.1| DNA transfer protein [Helicobacter pylori ... 22 1.9
ref|NP_222890.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_222780.1| putative [Helicobacter pylori J99] 22 1.9
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 22 2.5
ref|NP_223801.1| putative Outer membrane protein [Helicobac... 22 3.2
ref|NP_223586.1| putative [Helicobacter pylori J99] 22 3.2
ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter... 21 4.2
ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERME... 21 4.2
ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobac... 21 4.2
ref|NP_224138.1| glutamine fructose-6-phosphate aminotransf... 21 5.5
ref|NP_224068.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 21 5.5
ref|NP_222894.1| putative [Helicobacter pylori J99] 21 5.5
ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter py... 21 5.5
ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter p... 20 7.1
ref|NP_222895.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_222881.1| putative [Helicobacter pylori J99] 20 7.1
ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori... 20 9.3
ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN... 20 9.3
>ref|NP_223023.1| putative [Helicobacter pylori J99]
Length = 79
Score = 153 bits (387), Expect = 5e-40
Identities = 77/79 (97%), Positives = 78/79 (98%)
Query: 1 MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDA 60
MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNE KTLDA
Sbjct: 1 MGGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNELKTLDA 60
Query: 61 QATQTKVHESSEIKSKQES 79
QATQTKVHE+SEIKSKQES
Sbjct: 61 QATQTKVHETSEIKSKQES 79
>ref|NP_224061.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 549
Score = 30.0 bits (66), Expect = 0.009
Identities = 20/63 (31%), Positives = 30/63 (46%), Gaps = 4/63 (6%)
Query: 4 FTSIWHWVIVLLVIVLLFGAKKIPELAKGLGS--GIKNFKKAVKDDEEEAKNEPKTLDAQ 61
F W W I+LL I++ P KG+ S +K +K+ +E+ K EP+ L A
Sbjct: 351 FVGNWGWAIILLTIIVRI--ILYPLSYKGMVSMQKLKELAPKMKELQEKYKGEPQKLQAH 408
Query: 62 ATQ 64
Q
Sbjct: 409 MMQ 411
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 26.9 bits (58), Expect = 0.076
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 44 VKDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQE 78
+K + E+ NE L+ + + +HE +E+K KQ+
Sbjct: 152 LKAENEKKLNEKLELEREKIEKALHEKNELKFKQQ 186
>ref|NP_224167.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
Length = 526
Score = 26.6 bits (57), Expect = 0.100
Identities = 19/64 (29%), Positives = 29/64 (44%), Gaps = 5/64 (7%)
Query: 15 LVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIK 74
L L + AKK L K + S ++ + D++E K LDA + + H EIK
Sbjct: 63 LASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKK-----LDALLLELQGHSQFEIK 117
Query: 75 SKQE 78
+ E
Sbjct: 118 KEAE 121
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 25.0 bits (53), Expect = 0.29
Identities = 10/44 (22%), Positives = 22/44 (49%)
Query: 11 VIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNE 54
++VL+V ++ G +K P+ + + KK + D ++ E
Sbjct: 10 LVVLIVAIIFLGPEKFPQAVVDIVKFFRAVKKTLNDAKDTLDKE 53
>ref|NP_224178.1| Ubiquinol cytochrome c oxidoreductase, cytochrome b subunit
[Helicobacter pylori J99]
Length = 412
Score = 23.1 bits (48), Expect = 1.1
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 7 IWHWVIVLLVIVL-LFGAKKIPELAKGLGSGI 37
+W W++++ +IVL ++G K+P L G G+
Sbjct: 354 VWFWLLIIDMIVLTIYG--KLPPLGIGKYIGL 383
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 22.7 bits (47), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 45 KDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQES 79
K+ +E P+ L+AQ + + +E+ + +S QES
Sbjct: 348 KEIQETQDETPQELEAQDEKLQENETPKDESMQES 382
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 22.7 bits (47), Expect = 1.4
Identities = 9/42 (21%), Positives = 22/42 (51%)
Query: 37 IKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQE 78
+K ++ DD+E + ++PK D + E ++ S+++
Sbjct: 230 VKELFRSFDDDDENSVSDPKKDDDSEEDEENEERKKVVSEKD 271
>ref|NP_224100.1| putative [Helicobacter pylori J99]
Length = 510
Score = 22.3 bits (46), Expect = 1.9
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 23 AKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKSK 76
A+ + E+ KG K+F+ A+K + +TL AQ K H +S +K+K
Sbjct: 230 AETLEEVEKG---HYKHFQNALKMQKVGQIARVETLGAQVAYDKAHIAS-VKAK 279
>ref|NP_223635.1| DNA transfer protein [Helicobacter pylori J99]
Length = 475
Score = 22.3 bits (46), Expect = 1.9
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 28 ELAKGLGSGIKNFKKAVKDDEEEA--KNEPKTLD 59
E+AK LGS ++F + +K E+ KN LD
Sbjct: 385 EIAKNLGSSEQDFNEILKSQGEKIYFKNFQDCLD 418
>ref|NP_222890.1| putative [Helicobacter pylori J99]
Length = 236
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/21 (42%), Positives = 15/21 (70%)
Query: 36 GIKNFKKAVKDDEEEAKNEPK 56
G+K+ +K +KD+ EE +E K
Sbjct: 159 GVKHVEKNLKDNLEEMSDEVK 179
>ref|NP_222780.1| putative [Helicobacter pylori J99]
Length = 500
Score = 22.3 bits (46), Expect = 1.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 37 IKNFKKAVKDDEEEAKNEPKTLDA 60
+KNFK+A++ E+ K P +A
Sbjct: 310 VKNFKEALEGFTEKIKESPNDSNA 333
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 21.9 bits (45), Expect = 2.5
Identities = 8/28 (28%), Positives = 18/28 (63%)
Query: 52 KNEPKTLDAQATQTKVHESSEIKSKQES 79
K+E + D + ++H++SEI +K ++
Sbjct: 581 KSEVASKDTSSMHKEIHKASEILNKHKT 608
>ref|NP_223801.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 1237
Score = 21.6 bits (44), Expect = 3.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 31 KGLGSGIKNFKKAVKDDEEEAKN 53
KG+ +G+K F +A+K + N
Sbjct: 874 KGVENGLKQFFEALKSNSSSLSN 896
>ref|NP_223586.1| putative [Helicobacter pylori J99]
Length = 251
Score = 21.6 bits (44), Expect = 3.2
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 2 GGFTSIWHWVIVLLVIVLLFGAKKIPELAKGLGSGIKNFKKAVKD 46
GG S++ +LL ++ F KKIP + GS F +K+
Sbjct: 95 GGEPSLYFNNPILLSVLEHFYHKKIPLFVESNGSIFFEFSPILKE 139
>ref|NP_223966.1| CATION EFFLUX SYSTEM PROTEIN [Helicobacter pylori J99]
Length = 341
Score = 21.2 bits (43), Expect = 4.2
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 21 FGAKKIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQA 62
FG + A L G + +K EE A N LDA A
Sbjct: 294 FGLSPLEIKAVRLSDGSYEILEGLKAGEEVANNALFVLDADA 335
>ref|NP_223540.1| IRON(III) DICITRATE TRANSPORT SYSTEM PERMEASE PROTEIN
[Helicobacter pylori J99]
Length = 326
Score = 21.2 bits (43), Expect = 4.2
Identities = 7/15 (46%), Positives = 12/15 (79%)
Query: 12 IVLLVIVLLFGAKKI 26
++L V+VLLFG + +
Sbjct: 12 VILAVVVLLFGGESL 26
>ref|NP_223294.1| Hydrogenase, cytochrome subunit [Helicobacter pylori J99]
Length = 224
Score = 21.2 bits (43), Expect = 4.2
Identities = 7/18 (38%), Positives = 10/18 (54%)
Query: 3 GFTSIWHWVIVLLVIVLL 20
GF +HWV L + L+
Sbjct: 15 GFVRFFHWVRALSIFTLI 32
>ref|NP_224138.1| glutamine fructose-6-phosphate aminotransferase [Helicobacter
pylori J99]
Length = 597
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 45 KDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQ 77
+++ +AKN ++ A + K+HE + SK+
Sbjct: 420 EEERIQAKNMLNSVKAMKVEPKLHEKIKRLSKR 452
>ref|NP_224068.1| putative [Helicobacter pylori J99]
Length = 210
Score = 20.8 bits (42), Expect = 5.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 34 GSGIKNFKKAVKDDEEEAKNEPKTLD 59
GSGI+ + VK E+E ++E D
Sbjct: 118 GSGIEADSRMVKQREKERESEEYNQD 143
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 20.8 bits (42), Expect = 5.5
Identities = 14/52 (26%), Positives = 21/52 (39%)
Query: 27 PELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKSKQE 78
PE K L +K KA D A+NE + + + T K +Q+
Sbjct: 1227 PEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQ 1278
Score = 20.4 bits (41), Expect = 7.1
Identities = 12/39 (30%), Positives = 17/39 (42%)
Query: 27 PELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQT 65
PE K L +K KA D A+NE + + + T
Sbjct: 1043 PEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT 1081
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 20.8 bits (42), Expect = 5.5
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 27 PELAKGLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKVHESSEIKS 75
P+ L + N KK ++ + + ++ + T+ K E+K+
Sbjct: 84 PKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKA 132
>ref|NP_222837.1| 50S RIBOSOMAL PROTEIN L20 [Helicobacter pylori J99]
Length = 116
Score = 20.8 bits (42), Expect = 5.5
Identities = 11/21 (52%), Positives = 16/21 (75%), Gaps = 1/21 (4%)
Query: 24 KKIPELAKGLGSG-IKNFKKA 43
KK+ +LA+G SG K+F+KA
Sbjct: 14 KKVLKLARGFYSGRRKHFRKA 34
>ref|NP_222999.1| P-AMINOBENZOATE SYNTHETASE [Helicobacter pylori J99]
Length = 567
Score = 20.4 bits (41), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 32 GLGSGIKNFKKAVKDDEE 49
G+GSG+ KA K+ EE
Sbjct: 331 GVGSGVTYKSKASKEYEE 348
>ref|NP_222895.1| putative [Helicobacter pylori J99]
Length = 567
Score = 20.4 bits (41), Expect = 7.1
Identities = 11/34 (32%), Positives = 15/34 (43%)
Query: 25 KIPELAKGLGSGIKNFKKAVKDDEEEAKNEPKTL 58
K+ + S +KNF +A D E P TL
Sbjct: 305 KLKSFIQSYVSDLKNFYQAFLDLLSEIDTNPTTL 338
>ref|NP_222881.1| putative [Helicobacter pylori J99]
Length = 242
Score = 20.4 bits (41), Expect = 7.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 2 GGFTSIWHWVIVLLVIVLLF 21
G F ++ WV LV L+F
Sbjct: 66 GFFAGVFAWVFKALVYFLIF 85
>ref|NP_224013.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 287
Score = 20.0 bits (40), Expect = 9.3
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 37 IKNFKKAVKDDEEEAKNEPKTLDAQATQTKVH 68
+ NF KA+ + NE K A TK H
Sbjct: 23 LDNFTKAINSYTAKKLNEIKDQVNSANPTKNH 54
>ref|NP_223407.1| putative FLAGELLAR HOOK-ASSOCIATED PROTEIN 2 (HAP2) [Helicobacter
pylori J99]
Length = 685
Score = 20.0 bits (40), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (49%)
Query: 32 GLGSGIKNFKKAVKDDEEEAKNEPKTLDAQATQTKV 67
GL +G+ +A +D +KN K D+Q T V
Sbjct: 408 GLSAGMVQSYEASQDTLFMSKNLQKASDSQFTYNGV 443
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.311 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,679
Number of Sequences: 1491
Number of extensions: 2989
Number of successful extensions: 29
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of query: 79
length of database: 494,079
effective HSP length: 55
effective length of query: 24
effective length of database: 412,074
effective search space: 9889776
effective search space used: 9889776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.9 bits)
S2: 40 (20.0 bits)