BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644950|ref|NP_207120.1| poly E-rich protein
[Helicobacter pylori 26695]
(505 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223025.1| putative [Helicobacter pylori J99] 746 0.0
ref|NP_223176.1| putative [Helicobacter pylori J99] 72 3e-14
ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEI... 57 1e-09
ref|NP_223889.1| putative [Helicobacter pylori J99] 53 2e-08
ref|NP_223194.1| cag island protein [Helicobacter pylori J99] 53 2e-08
ref|NP_223830.1| putative [Helicobacter pylori J99] 52 5e-08
ref|NP_223195.1| cag island protein [Helicobacter pylori J99] 50 1e-07
ref|NP_222831.1| putative [Helicobacter pylori J99] 49 3e-07
ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helico... 49 4e-07
ref|NP_223788.1| putative [Helicobacter pylori J99] 46 2e-06
ref|NP_223773.1| putative [Helicobacter pylori J99] 46 2e-06
ref|NP_223610.1| putative [Helicobacter pylori J99] 46 3e-06
ref|NP_223515.1| putative [Helicobacter pylori J99] 45 3e-06
ref|NP_223787.1| putative [Helicobacter pylori J99] 45 4e-06
ref|NP_223706.1| histidine kinase [Helicobacter pylori J99] 45 4e-06
ref|NP_223560.1| putative [Helicobacter pylori J99] 45 6e-06
ref|NP_223054.1| septum formation protein [Helicobacter pyl... 44 7e-06
ref|NP_222772.1| putative [Helicobacter pylori J99] 44 7e-06
ref|NP_223645.1| putative [Helicobacter pylori J99] 43 2e-05
ref|NP_223642.1| putative [Helicobacter pylori J99] 42 3e-05
ref|NP_223625.1| putative [Helicobacter pylori J99] 41 8e-05
ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPO... 41 8e-05
ref|NP_222894.1| putative [Helicobacter pylori J99] 40 2e-04
ref|NP_223759.1| putative [Helicobacter pylori J99] 39 2e-04
ref|NP_223322.1| putative [Helicobacter pylori J99] 39 3e-04
ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU ... 39 4e-04
ref|NP_224062.1| putative [Helicobacter pylori J99] 38 7e-04
ref|NP_222774.1| putative [Helicobacter pylori J99] 38 7e-04
ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATE... 37 9e-04
ref|NP_222877.1| putative [Helicobacter pylori J99] 36 0.002
ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [He... 36 0.002
ref|NP_223761.1| putative [Helicobacter pylori J99] 35 0.003
ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANI... 35 0.003
ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 35 0.003
ref|NP_222962.1| putative [Helicobacter pylori J99] 35 0.004
ref|NP_223659.1| putative [Helicobacter pylori J99] 35 0.006
ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori... 34 0.008
ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (... 34 0.010
ref|NP_222874.1| putative [Helicobacter pylori J99] 34 0.010
ref|NP_223574.1| putative vacuolating cytotoxin (VacA) para... 33 0.013
ref|NP_223189.1| cag island protein [Helicobacter pylori J99] 33 0.013
ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter ... 33 0.022
ref|NP_223770.1| putative [Helicobacter pylori J99] 33 0.022
ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 33 0.022
ref|NP_223219.1| putative [Helicobacter pylori J99] 32 0.029
ref|NP_223158.1| putative [Helicobacter pylori J99] 32 0.029
ref|NP_224134.1| putative [Helicobacter pylori J99] 32 0.049
ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 32 0.049
ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99] 32 0.049
ref|NP_223700.1| putative [Helicobacter pylori J99] 31 0.064
ref|NP_223617.1| putative [Helicobacter pylori J99] 31 0.064
ref|NP_223415.1| putative [Helicobacter pylori J99] 31 0.064
ref|NP_224003.1| putative [Helicobacter pylori J99] 30 0.11
ref|NP_222757.1| DNA transformation compentancy [Helicobact... 30 0.11
ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori... 30 0.14
ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter py... 30 0.14
ref|NP_223318.1| putative Outer membrane protein [Helicobac... 30 0.14
ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter py... 30 0.19
ref|NP_223614.1| putative [Helicobacter pylori J99] 30 0.19
ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERA... 30 0.19
ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter p... 29 0.24
ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99] 29 0.24
ref|NP_224180.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_223656.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_223644.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_223639.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_223323.1| putative [Helicobacter pylori J99] 29 0.32
ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pyl... 28 0.42
ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helico... 28 0.42
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) ... 28 0.42
ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobac... 28 0.54
ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99] 28 0.54
ref|NP_223038.1| putative [Helicobacter pylori J99] 28 0.54
ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUB... 28 0.71
ref|NP_223771.1| putative Outer membrane protein [Helicobac... 28 0.71
ref|NP_223180.1| putative [Helicobacter pylori J99] 28 0.71
ref|NP_223651.1| putative [Helicobacter pylori J99] 27 0.93
ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARB... 27 0.93
ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter ... 27 0.93
ref|NP_223084.1| putative [Helicobacter pylori J99] 27 0.93
ref|NP_223039.1| putative [Helicobacter pylori J99] 27 0.93
ref|NP_223725.1| putative outer membrane protein [Helicobac... 27 1.2
ref|NP_223199.1| cag island protein [Helicobacter pylori J99] 27 1.2
ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pyl... 27 1.2
ref|NP_223088.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_222840.1| putative [Helicobacter pylori J99] 27 1.2
ref|NP_223790.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223661.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_222839.1| putative [Helicobacter pylori J99] 27 1.6
ref|NP_223990.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_223915.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_223137.1| putative [Helicobacter pylori J99] 26 2.1
ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99] 26 2.1
ref|NP_224153.1| putative [Helicobacter pylori J99] 26 2.7
ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N... 26 2.7
ref|NP_223664.1| putative [Helicobacter pylori J99] 26 2.7
ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PRO... 26 2.7
ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobact... 26 2.7
ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99] 26 2.7
ref|NP_223188.1| cag island protein [Helicobacter pylori J99] 26 2.7
ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobac... 25 3.5
ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori... 25 3.5
ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter p... 25 3.5
ref|NP_223618.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223252.1| putative [Helicobacter pylori J99] 25 3.5
ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter p... 25 4.6
ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE ... 25 4.6
ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT ... 25 4.6
ref|NP_223575.1| putative Outer membrane protein [Helicobac... 25 4.6
ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helico... 25 4.6
ref|NP_223375.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_223147.1| putative Outer membrane protein [Helicobac... 25 4.6
ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pyl... 25 4.6
ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99] 25 4.6
ref|NP_222733.1| putative [Helicobacter pylori J99] 25 4.6
ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE... 25 6.0
ref|NP_224090.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99] 25 6.0
ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [H... 25 6.0
ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacte... 25 6.0
ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobact... 25 6.0
ref|NP_222827.1| putative [Helicobacter pylori J99] 25 6.0
ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylor... 24 7.9
ref|NP_223411.1| putative [Helicobacter pylori J99] 24 7.9
>ref|NP_223025.1| putative [Helicobacter pylori J99]
Length = 501
Score = 746 bits (1925), Expect = 0.0
Identities = 405/523 (77%), Positives = 438/523 (83%), Gaps = 42/523 (8%)
Query: 1 MKMILFNQNPMITKLLESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQ 60
MKMILFNQNPMI KLLESVSKKLEL IENFNHYQELSARLK + EWLLIADDECLEKLDQ
Sbjct: 1 MKMILFNQNPMIEKLLESVSKKLELSIENFNHYQELSARLKGDPEWLLIADDECLEKLDQ 60
Query: 61 VDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASE 120
VDWLELKETISQNKNSVCMYKKGNEAQPFLEGFE+KIKKPFLPTEMLKVLQKKLGSNASE
Sbjct: 61 VDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEMKIKKPFLPTEMLKVLQKKLGSNASE 120
Query: 121 LEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQE---EKEEVKEE 177
LEPSQNLDPTQE+LETNWDELENLGDLEAL +EEPNNEEQLLPTLN+QE KEE +EE
Sbjct: 121 LEPSQNLDPTQEILETNWDELENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEE 180
Query: 178 EKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEG-ETLKDKEVSKELEAPQELEI 236
K+E +E +EEVKE++K+EV E PQ+E+KPKDDETQ E KD+EVSKELE +ELE
Sbjct: 181 VKKEEVKEMQEEVKEKQKQEVAENPQDEEKPKDDETQGSVEPPKDEEVSKELETQEELET 240
Query: 237 PKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENK---EK 293
PKEETQEQ+PIKEETQE KEEKQEKTQDSPSAQELEAMQELVKEIQENSN QENK ++
Sbjct: 241 PKEETQEQEPIKEETQEIKEEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQE 300
Query: 294 TQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDV 353
TQE+ E PQD E QELE+PKE +E+ E ++TQ LEK+EIAETPQ+
Sbjct: 301 TQENTETPQDIE----------TQELEIPKE--EETQEVAEKTQVQGLEKEEIAETPQEK 348
Query: 354 EIPQSQDKEVQELEIPKEETQENTETP------------QDVETPQEKETQEDHYESIED 401
EI ++QD+ QELE E+ QEN ETP QD ETPQE ETQEDHYESIED
Sbjct: 349 EIQETQDETPQELEAQDEKLQEN-ETPKDESMQESAQNLQDKETPQE-ETQEDHYESIED 406
Query: 402 IPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKT 461
IPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKES + + PQEKEESDKT
Sbjct: 407 IPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKES---------DIKAPQEKEESDKT 457
Query: 462 SSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPN 504
SSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPN
Sbjct: 458 SSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKPN 500
Score = 79.0 bits (193), Expect = 3e-16
Identities = 88/362 (24%), Positives = 156/362 (42%), Gaps = 81/362 (22%)
Query: 27 IENFNHYQELSARLKENQEWLL---------IADDECLEKLDQVDWLELKETISQNKNSV 77
+EN + L+ N+E LL +E E++ + + E++E + + +
Sbjct: 141 LENLGDLEALAKEEPNNEEQLLPTLNEQEGETPKEEAQEEVKKEEVKEMQEEVKEKQKQE 200
Query: 78 CMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVL--QKKLGSNASELEPSQNL-DPTQEVL 134
+E +P + + ++ P E+ K L Q++L + E + + + + TQE+
Sbjct: 201 VAENPQDEEKPKDDETQGSVEPP-KDEEVSKELETQEELETPKEETQEQEPIKEETQEIK 259
Query: 135 ETNWD---------ELENLGDLEALVQEEPNNEEQLLPTLNDQEEKE---EVKEEEKEEV 182
E + ELE + +L +QE N++E T QE E +++ +E E
Sbjct: 260 EEKQEKTQDSPSAQELEAMQELVKEIQENSNDQENKKETQETQENTETPQDIETQELEIP 319
Query: 183 KEEEKEEVKEE------EKEEVKETPQE------------EKKPKDDETQEGETLKDKEV 224
KEEE +EV E+ EKEE+ ETPQE E + +D++ QE ET KD+ +
Sbjct: 320 KEEETQEVAEKTQVQGLEKEEIAETPQEKEIQETQDETPQELEAQDEKLQENETPKDESM 379
Query: 225 SKELEAPQELEIPKEETQEQ---------DPI----------------------KEETQE 253
+ + Q+ E P+EETQE +P+ + +T+
Sbjct: 380 QESAQNLQDKETPQEETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTET 439
Query: 254 NKEEK----QEKTQDSPSAQELEA---MQELVKEIQENSNGQENKEKTQESAEIPQDKEI 306
KE QEK + ++ LE +Q+L+K + + S + KT +DK+
Sbjct: 440 PKESDIKAPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKKP 499
Query: 307 QE 308
E
Sbjct: 500 NE 501
>ref|NP_223176.1| putative [Helicobacter pylori J99]
Length = 450
Score = 72.0 bits (175), Expect = 3e-14
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 15/215 (6%)
Query: 174 VKEEEKEEVKEEEKEEVKE--EEKEEVKETPQEEKKPKDDETQEGETLKDKEVSK---EL 228
VK+E+++EV+ E+KEE + E K E+K+ +E K + T+ TL++K K +
Sbjct: 237 VKKEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKF 296
Query: 229 EAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQ 288
+A +E ++E ++ K+ + + EK+ +D +E E+ K E N +
Sbjct: 297 DAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKG-NEKVNAK 355
Query: 289 EN-KEKTQESAEIPQD------KEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHEL 341
EN +E QESA P K+ + K A + E PK ++E L+E +
Sbjct: 356 ENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAK 415
Query: 342 EKQEIAETPQDVEIPQSQDKEVQELEIPKEETQEN 376
+Q E Q + Q+++ +ELE ++ + N
Sbjct: 416 AEQRAREFEQRAR--EHQERDEKELEERRKALEMN 448
Score = 52.0 bits (123), Expect = 4e-08
Identities = 50/195 (25%), Positives = 85/195 (42%), Gaps = 20/195 (10%)
Query: 132 EVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVK 191
E E D EN +++ +EP Q EEK K E K + KEE +
Sbjct: 248 EKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEERRRSRD 307
Query: 192 EEEKEEV--KETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQE--QDPI 247
E +K + K EE++ + DE E ET +++ + E++ E KE +E Q+
Sbjct: 308 ERKKTKATKKAMEFEEREKEHDERDEKET-EERRKALEMDKGNEKVNAKENEREINQESA 366
Query: 248 KEETQEN-------------KEEKQEKTQDSPSA-QELEAMQELVKEIQENSNGQENKEK 293
E + EN KE +K PS+ +E ++E K+ + +E +++
Sbjct: 367 NEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQR 426
Query: 294 TQESAEIPQDKEIQE 308
+E E +KE++E
Sbjct: 427 AREHQE-RDEKELEE 440
Score = 50.1 bits (118), Expect = 1e-07
Identities = 55/222 (24%), Positives = 98/222 (43%), Gaps = 33/222 (14%)
Query: 148 EALVQEEPNNE---EQLLPTLNDQEEKEEVKEEEKEEVKEE---------------EKEE 189
+ALV++E E E+ ++ +E K E+K+E +E K+ +K E
Sbjct: 234 DALVKKEKRKEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAE 293
Query: 190 VKEEEKEEVKETPQEEKKPKDD----ETQEGETLKDKEVSKELEAPQELEIPKEETQEQD 245
K + KEE + + E KK K E +E E D+ KE E E K ++
Sbjct: 294 RKFDAKEERRRSRDERKKTKATKKAMEFEEREKEHDERDEKETE-----ERRKALEMDKG 348
Query: 246 PIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKE 305
K +EN+ E +++ + PS++ +K+ + S +E+ K + A P KE
Sbjct: 349 NEKVNAKENEREINQESANEPSSEN----NATLKDTENTSVLKESAAK--KEAPKPSSKE 402
Query: 306 IQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIA 347
+ + E+ + + E + ++ A QE ELE++ A
Sbjct: 403 EKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKA 444
Score = 43.5 bits (101), Expect = 1e-05
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 18/176 (10%)
Query: 129 PTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKE 188
PT E E N+ + E D + + + ++ T E +E +E+E +E E+E E
Sbjct: 282 PTLE--EKNYQKAERKFDAKEERRRSRDERKKTKATKKAMEFEE--REKEHDERDEKETE 337
Query: 189 E-------VKEEEKEEVKETPQE--EKKPKDDETQEGETLKDKEVSKEL-EAPQELEIPK 238
E K EK KE +E ++ + ++ TLKD E + L E+ + E PK
Sbjct: 338 ERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEAPK 397
Query: 239 EETQEQD-PIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEK 293
++E+ +KEE ++ K E++ + + + + E + KE++E E +K
Sbjct: 398 PSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE---KELEERRKALEMNKK 450
Score = 35.8 bits (81), Expect = 0.003
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 304 KEIQ-EVVTEKTQAQE--LEVPKEKTQESAEALQETQ-AHELEKQEI--AETPQDVEIPQ 357
KE++ E E+ A+E E+ +E +E +A Q T+ A LE++ AE D + +
Sbjct: 243 KEVRIEKKEERIDARENKREIKQEAIKEPKKANQGTENAPTLEEKNYQKAERKFDAKEER 302
Query: 358 SQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYE-SIEDIPEPVMAKAMGEELP 416
+ ++ ++ ++ E E ++ + EKET+E ++ E V AK E
Sbjct: 303 RRSRDERKKTKATKKAMEFEEREKEHDERDEKETEERRKALEMDKGNEKVNAKENERE-- 360
Query: 417 FLNEAVAKIPNNENDT---ETPKESVTETSKNENNTETPQEKEE 457
+N+ A P++EN+ +T SV + S + P KEE
Sbjct: 361 -INQESANEPSSENNATLKDTENTSVLKESAAKKEAPKPSSKEE 403
Score = 33.1 bits (74), Expect = 0.017
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 105 EMLKVLQKKLGS---NASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQL 161
E K L+ G+ NA E E N + E N L++ + L + E
Sbjct: 338 ERRKALEMDKGNEKVNAKENEREINQESANEPSSENNATLKDTENTSVLKESAAKKEA-- 395
Query: 162 LPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQE 204
P + +EEK +KEE+K+ E+ E ++ +E + +E
Sbjct: 396 -PKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKE 437
>ref|NP_223978.1| SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter pylori
J99]
Length = 280
Score = 56.6 bits (135), Expect = 1e-09
Identities = 44/131 (33%), Positives = 63/131 (47%), Gaps = 24/131 (18%)
Query: 170 EKEEVKEEEKEEVKEEE--KEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKE 227
E + KEE KE+ K+EE KEE K+E K + K P+ + KPK K K K
Sbjct: 69 ESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKP---------KPKPEPKP 119
Query: 228 LEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNG 287
P ++E PK+E +++P KEE +E +EK Q + K+I + +
Sbjct: 120 KPEP-KVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVT------------TKDIVKEKDK 166
Query: 288 QENKEKTQESA 298
QE KT E A
Sbjct: 167 QEESNKTSEGA 177
Score = 51.2 bits (121), Expect = 6e-08
Identities = 40/169 (23%), Positives = 77/169 (44%), Gaps = 8/169 (4%)
Query: 168 QEEKEEVKEEE--KEEVKEEEKEEVKEEEKEEVKETPQEEKKPK---DDETQEGETLKDK 222
+E KE+ K+EE KEE K+E K + K + K + K P+ + +PK + + +E + + K
Sbjct: 75 EEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPK 134
Query: 223 EVSKELEAPQELE---IPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVK 279
E K+ EA +E + +PK+ T + +++ QE + E A E +
Sbjct: 135 EEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQAYNPGVSNEFLM 194
Query: 280 EIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQE 328
+IQ + + K + I + + + +++V K T +
Sbjct: 195 KIQTAISSKNRYPKMAQIRGIEGEVLVSFTINADGSVTDIKVVKSNTTD 243
Score = 43.1 bits (100), Expect = 2e-05
Identities = 30/122 (24%), Positives = 58/122 (46%), Gaps = 1/122 (0%)
Query: 218 TLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQEL 277
T + E +K E P+E + KEE ++++P KE + K + + K + P + +
Sbjct: 64 TKTNAESAKPKEEPKE-KPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPE 122
Query: 278 VKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQ 337
K + + + K +E+ E ++K + + VT K +E + +E + S A E Q
Sbjct: 123 PKVEEPKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTSEGATSEAQ 182
Query: 338 AH 339
A+
Sbjct: 183 AY 184
Score = 41.2 bits (95), Expect = 6e-05
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 12/103 (11%)
Query: 152 QEEPNNEEQLLPTLNDQEE-------KEEVKEEEKEEVKEEEKEEVKEE-EKEEVKETPQ 203
+EEP E + P + + K E K + + +V+E +KEE KEE +KEE KE +
Sbjct: 88 KEEPKKETKPKPKPKPKPKPKPKPKPKPEPKPKPEPKVEEPKKEEPKEEPKKEEAKEEAK 147
Query: 204 EEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDP 246
E+ PK T+ + +K+K+ K+ E+ + E E Q +P
Sbjct: 148 EKSVPKQVTTK--DIVKEKD--KQEESNKTSEGATSEAQAYNP 186
Score = 36.6 bits (83), Expect = 0.002
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 281 IQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHE 340
I NSN + N E + E + + +E E+ + + PK K + + + +
Sbjct: 58 INTNSNTKTNAESAKPKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPKPEP 117
Query: 341 LEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETP---QEKETQEDHYE 397
K E P+ E + + KE + E KEE +E + P+ V T +EK+ QE+ +
Sbjct: 118 KPKPE----PKVEEPKKEEPKEEPKKEEAKEEAKEKS-VPKQVTTKDIVKEKDKQEESNK 172
Query: 398 SIEDIPEPVMAKAMGEELPFL 418
+ E A G FL
Sbjct: 173 TSEGATSEAQAYNPGVSNEFL 193
Score = 32.3 bits (72), Expect = 0.029
Identities = 26/107 (24%), Positives = 45/107 (41%), Gaps = 5/107 (4%)
Query: 356 PQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEEL 415
P+ + KE + E PK+E + P+ P+ K + + PEP E
Sbjct: 73 PKEEPKEKPKKEEPKKEEPKKETKPKPKPKPKPKPKPKPKPK-----PEPKPKPEPKVEE 127
Query: 416 PFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTS 462
P E + E E ++SV + ++ + ++EES+KTS
Sbjct: 128 PKKEEPKEEPKKEEAKEEAKEKSVPKQVTTKDIVKEKDKQEESNKTS 174
>ref|NP_223889.1| putative [Helicobacter pylori J99]
Length = 219
Score = 53.1 bits (126), Expect = 2e-08
Identities = 27/62 (43%), Positives = 43/62 (68%), Gaps = 4/62 (6%)
Query: 154 EPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVK-ETPQE---EKKPK 209
E N + +P L+ +K+E+K+E K+E+K+E K+E+K+E K+E+K ET QE E KPK
Sbjct: 74 EQNPTKDTVPPLDTATQKQEIKQEIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPK 133
Query: 210 DD 211
+
Sbjct: 134 QN 135
Score = 41.2 bits (95), Expect = 6e-05
Identities = 27/105 (25%), Positives = 51/105 (47%), Gaps = 7/105 (6%)
Query: 119 SELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEE 178
S P + + T E N + + + L+ Q++ +E QE K+E+K+E
Sbjct: 58 STFSPKEEANATTTATEQNPTK-DTVPPLDTATQKQEIKQEI------KQEIKQEIKQEI 110
Query: 179 KEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKE 223
K+E+K+E K+E K+E+++E K ++D+ L K+
Sbjct: 111 KQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKK 155
Score = 34.3 bits (77), Expect = 0.008
Identities = 37/120 (30%), Positives = 57/120 (46%), Gaps = 14/120 (11%)
Query: 178 EKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELE-APQELEI 236
+K+ E E E++ +P+EE T++ T K+ L+ A Q+ EI
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPT---KDTVPPLDTATQKQEI 94
Query: 237 PKEETQEQDPIKEET-QENKEE-KQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKT 294
+E QE IK+E QE K+E KQE Q++ QE E K Q + + +N +KT
Sbjct: 95 KQEIKQE---IKQEIKQEIKQEIKQEIKQETKQEQEKEN-----KPKQNSVSPVQNDQKT 146
Score = 33.1 bits (74), Expect = 0.017
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 202 PQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEK 261
P K + ++ T KE + E + T++ P + + +E KQE
Sbjct: 43 PMSPNVEKSETERQNSTFSPKEEANATTTATE----QNPTKDTVPPLDTATQKQEIKQEI 98
Query: 262 TQDSPSAQELEAMQELVKEI-QENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELE 320
Q+ + E QE+ +EI QE QE + K ++++ P + + T + LE
Sbjct: 99 KQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLE 158
Score = 32.0 bits (71), Expect = 0.038
Identities = 27/97 (27%), Positives = 46/97 (46%), Gaps = 6/97 (6%)
Query: 170 EKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQE-EKKPKDDETQEGETLKDK-EVSKE 227
+K+ E E E++ KEE T E+ P D +T K E+ +E
Sbjct: 38 KKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIKQE 97
Query: 228 LEAPQELEIPKEETQEQDPIKEET-QENKEEKQEKTQ 263
++ + EI +E QE IK+E QE K+E++++ +
Sbjct: 98 IKQEIKQEIKQEIKQE---IKQEIKQETKQEQEKENK 131
Score = 31.6 bits (70), Expect = 0.049
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 163 PTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDK 222
P + E+ E ++ KEE E+ K+T P D TQ+ E +
Sbjct: 43 PMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVP----PLDTATQKQEI--KQ 96
Query: 223 EVSKELEAPQELEIPKEETQE--QDPIKEETQENKEEK 258
E+ +E++ + EI +E QE Q+ +E+ +ENK ++
Sbjct: 97 EIKQEIKQEIKQEIKQEIKQEIKQETKQEQEKENKPKQ 134
Score = 30.0 bits (66), Expect = 0.14
Identities = 22/93 (23%), Positives = 46/93 (48%), Gaps = 6/93 (6%)
Query: 116 SNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVK 175
+ A+E P+++ P L+T + E +++ +++E E + QE K+E K
Sbjct: 70 TTATEQNPTKDTVPP---LDTATQKQEIKQEIKQEIKQEIKQE---IKQEIKQEIKQETK 123
Query: 176 EEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKP 208
+E+++E K ++ + ++ TP KKP
Sbjct: 124 QEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKP 156
Score = 29.6 bits (65), Expect = 0.19
Identities = 19/80 (23%), Positives = 38/80 (46%), Gaps = 1/80 (1%)
Query: 417 FLNEAVAKIPNNENDTETPKESVTETSKNENN-TETPQEKEESDKTSSPLELRLNLQDLL 475
++ + A + N +ET +++ T + K E N T T E+ + T PL+ Q++
Sbjct: 36 YVKKDSAPMSPNVEKSETERQNSTFSPKEEANATTTATEQNPTKDTVPPLDTATQKQEIK 95
Query: 476 KSLNQESLKSLLENKTLSIK 495
+ + QE + + + IK
Sbjct: 96 QEIKQEIKQEIKQEIKQEIK 115
>ref|NP_223194.1| cag island protein [Helicobacter pylori J99]
Length = 1819
Score = 53.1 bits (126), Expect = 2e-08
Identities = 68/293 (23%), Positives = 132/293 (44%), Gaps = 40/293 (13%)
Query: 219 LKDK----EVSKELEAPQELEIPKEETQEQ-----DPIKEETQENKEEKQEKTQDSPSAQ 269
+KDK ++ K LEA + I +T+E+ D IK+E + Q+K Q +
Sbjct: 344 IKDKKLQDQMKKTLEAYNDC-IKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCL 402
Query: 270 ELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQE----VVTEKTQAQELEVPKEK 325
+ E KE + N E +EK ++ E+ KE+QE + KT+A++ E K
Sbjct: 403 KNAKTDEERKECLKLINDPEIREKFRKELEL--QKELQEYKDCIKNAKTEAEKNECLKGL 460
Query: 326 TQESAEALQE--------TQAHELEKQEIAETPQDVEIPQSQDKEVQELE--IPKEETQE 375
++E+ E L++ + E K+ + PQD++ D V+ + + + ++
Sbjct: 461 SKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDCVSRARNEK 520
Query: 376 NTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETP 435
+ + + TP+ K+ E+ ++++ + AK E E + +P +
Sbjct: 521 EKQECEKLLTPEAKKLLEN--QALDCLKN---AKTDEER----KECLKNLPKDLQSDILA 571
Query: 436 KESVTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLE 488
KES+ + +T EK+E +K +P + LL+ +ES+K+ L+
Sbjct: 572 KESLKAYKDCASQAKTEAEKKECEKLLTP-----EAKKLLEEEAKESVKAYLD 619
Score = 51.2 bits (121), Expect = 6e-08
Identities = 113/531 (21%), Positives = 213/531 (39%), Gaps = 76/531 (14%)
Query: 14 KLLESVSKKL-ELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQVDWLELKETISQ 72
KLL ++KL E E+ Y++ +R + +E EC + L E ++ + +
Sbjct: 818 KLLTPEARKLLEEAKESVKAYKDCVSRARNEKE-----KQECEKLLTP----EARKLLEE 868
Query: 73 NKNSV-----CMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASE---LEPS 124
+K SV C+ K NEA E K + L E K+L++ S + + +
Sbjct: 869 SKKSVKAYLDCVSKAKNEA-------ERKECEKLLTPEARKLLEEAKESVKAYKDCVSRA 921
Query: 125 QNLDPTQEVLETNWDELENLGDLEAL-----VQEEPNNEEQLLPTLNDQEEKEEVKE--- 176
+N QE + E + L + +AL + E + + D ++K KE
Sbjct: 922 RNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVR 981
Query: 177 -------EEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELE 229
+ K E + +E E++ E ++ E +E K D K+K+ ++L
Sbjct: 982 VYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLL 1041
Query: 230 APQ-----ELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN 284
P+ E E+ K D + E ++++ EK +P A++L Q L
Sbjct: 1042 TPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLL-TPEARKLLENQAL----DCL 1096
Query: 285 SNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQ---ELEVPKEKTQESAEALQETQAHEL 341
N + EK + ++P+D + + + E +A EK ++ E L +A +L
Sbjct: 1097 KNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEARKL 1156
Query: 342 EKQEIAETPQDVEI-----PQSQDKEVQELEIPK-----EETQENTETPQDV--ETPQEK 389
++ ++ +++ KE ++L P+ EE +E+ + +D EK
Sbjct: 1157 LEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNEK 1216
Query: 390 ETQEDHYESIEDIPEPVMAKAMGEELPFLNEA----VAKIPNNENDTETPKESVTETSKN 445
E QE E + P K + +E+ +A V++ N + E K E K
Sbjct: 1217 EKQE-----CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKF 1271
Query: 446 ENNTETPQEKEESD--KTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSI 494
++K D K + P + ++ L ++E LK L E + ++
Sbjct: 1272 LEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV 1322
Score = 49.7 bits (117), Expect = 2e-07
Identities = 54/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 249 EETQENKEEKQEKTQDSPSAQELEA--MQELVKEIQENSNGQENKEKTQESAEIPQDKEI 306
++ + +K+ +Q+ QD + + EA ++L+KE E+S+ + T+ +DK
Sbjct: 6 DKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNP-TETKTHFDEDK-- 62
Query: 307 QEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQEL 366
E+TQ Q E ++ S +L + + K + + + +S D+E Q+L
Sbjct: 63 ----LEETQTQMDSGGNETSESSNGSLADKLFKKARK--LVDDKRPFTQQKSLDEETQKL 116
Query: 367 EIPKEETQENTETPQDVETPQ-EKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKI 425
+E+ QEN E ++ +T + ET E ++ +D P+ + + E F +
Sbjct: 117 N--EEDDQENNEHQEETQTDLIDDETSE---KTQQDSPQDLSNEEATEANHFEDLLKEST 171
Query: 426 PNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELR--LNLQDLLK 476
+++N + P ES N T+T + K D+ P E+ N Q+++K
Sbjct: 172 ESSDNHLDNPTESSDNHLDNPTETKTQETKTHFDE-DKPEEITDDSNDQEIIK 223
Score = 48.1 bits (113), Expect = 5e-07
Identities = 97/422 (22%), Positives = 167/422 (38%), Gaps = 60/422 (14%)
Query: 105 EMLKVLQKKLGSN--ASELEPSQNLDPTQEVLETNWDELENLGDLEA--LVQEEPNNEEQ 160
E LK L K L S+ A E + +Q E E E L EA L++EE +
Sbjct: 556 ECLKNLPKDLQSDILAKESLKAYKDCASQAKTEAEKKECEKLLTPEAKKLLEEEAKESVK 615
Query: 161 LLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLK 220
Q + E K+E ++ + E K++++E +K K + E +E E L
Sbjct: 616 AYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVRAYLDCVSKAKNEAERKECEKLL 675
Query: 221 DKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSP-SAQELEAMQELVK 279
E K L E Q D +K + EE++E +D P Q+ +E V+
Sbjct: 676 TPEAKKLL-----------ENQALDCLK--NAKTDEERKECLKDLPKDLQKKVLAKESVR 722
Query: 280 EIQENSNGQENKEKTQESAEI--PQDKEIQEVVTEKTQAQE---LEVPKEKTQESAEALQ 334
+ + +N+ + +E ++ P+ +++ E + +A + L EK ++ E L
Sbjct: 723 VYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVLRARNEKEKQECEKLL 782
Query: 335 ETQAHELEKQEIAETPQDVEI-----PQSQDKEVQELEIPK-----EETQENTETPQDV- 383
+A +L ++ ++ +++ KE ++L P+ EE +E+ + +D
Sbjct: 783 TPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCV 842
Query: 384 -ETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFL-----------NEAVAK------I 425
EKE QE E + P K + E + NEA K
Sbjct: 843 SRARNEKEKQE-----CEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAERKECEKLLT 897
Query: 426 PNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELRL---NLQDLLKSLNQES 482
P E KESV + +EK+E +K +P +L D LK+ E+
Sbjct: 898 PEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLENQALDCLKNAKTEA 957
Query: 483 LK 484
K
Sbjct: 958 EK 959
Score = 43.9 bits (102), Expect = 1e-05
Identities = 49/216 (22%), Positives = 93/216 (42%), Gaps = 24/216 (11%)
Query: 116 SNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVK 175
SN E + D +E E++ + L+N + + E+ E Q E E
Sbjct: 23 SNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEETQTQMDSGGNETSESSN 82
Query: 176 EEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELE 235
+++ ++ ++ V ++ P ++K D+ETQ+ D+E ++
Sbjct: 83 GSLADKLFKKARKLVDDKR-------PFTQQKSLDEETQKLNEEDDQENNEH-------- 127
Query: 236 IPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENK--EK 293
+EETQ D I +ET E ++ + + A E ++L+KE E+S+ + E
Sbjct: 128 --QEETQT-DLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTES 184
Query: 294 TQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQES 329
+ + P + + QE KT E + P+E T +S
Sbjct: 185 SDNHLDNPTETKTQET---KTHFDE-DKPEEITDDS 216
Score = 43.1 bits (100), Expect = 2e-05
Identities = 51/262 (19%), Positives = 116/262 (43%), Gaps = 18/262 (6%)
Query: 152 QEEPNNEEQLLPTLND--QEEKEEVK------EEEKEEVKEEEKEEVKEEEKEEVKETPQ 203
+E+ E+ L P +E K+ VK + K E +++E E++ E ++ E +
Sbjct: 1140 KEKKECEKLLTPEARKLLEESKKSVKAYLDCVSKAKNEAEKKECEKLLTPEARKLLEEAK 1199
Query: 204 EEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQ 263
E K D K+K+ ++L P+ ++ ++E ++ + ++EK Q
Sbjct: 1200 ESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK-Q 1258
Query: 264 DSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDK-EIQEVVTEKTQAQELEVP 322
+ EA + L K+ Q+ ++ K + P D+ I + + + ++L+
Sbjct: 1259 ECEKLLTPEARKFLEKQRQQKDKAIKDCLKNAD----PNDRAAIMKCLDGLSDEEKLKYL 1314
Query: 323 KEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQ---ENTET 379
+E +++ +T + EK++ D+ I + Q+K+ Q + +T+ + +E
Sbjct: 1315 QEAREKAVLDCLKTARTDEEKRKCQNLYSDL-IQEIQNKKAQNKQNQLSKTERLHQASEC 1373
Query: 380 PQDVETPQEKETQEDHYESIED 401
+++ P ++E E E + D
Sbjct: 1374 LDNLDDPTDQEAIEQCLEGLSD 1395
Score = 43.1 bits (100), Expect = 2e-05
Identities = 47/227 (20%), Positives = 98/227 (42%), Gaps = 13/227 (5%)
Query: 139 DELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEV 198
D+LE + ++ +NEE + KE + + E + +E+K E
Sbjct: 6 DKLETSKKAQQDSPQDLSNEEATEANHFEDLLKESTESSDNHLDNPTETKTHFDEDKLEE 65
Query: 199 KETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEK 258
+T + + E+ G +L DK K ++L K +Q + EETQ+ EE
Sbjct: 66 TQTQMDSGGNETSESSNG-SLADKLFKKA----RKLVDDKRPFTQQKSLDEETQKLNEED 120
Query: 259 QEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQE 318
Q++ QE E +L+ + + + Q++ + + E + ++++ E T++ +
Sbjct: 121 D---QENNEHQE-ETQTDLIDD-ETSEKTQQDSPQDLSNEEATEANHFEDLLKESTESSD 175
Query: 319 --LEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEV 363
L+ P E + + ET+ E + + P+++ S D+E+
Sbjct: 176 NHLDNPTESSDNHLDNPTETKTQETKTHFDEDKPEEI-TDDSNDQEI 221
Score = 41.2 bits (95), Expect = 6e-05
Identities = 36/178 (20%), Positives = 74/178 (41%), Gaps = 16/178 (8%)
Query: 99 KPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNE 158
K + L+ Q ++ S +E S N ++ + + + D Q++ +E
Sbjct: 55 KTHFDEDKLEETQTQMDSGGNETSESSNGSLADKLFKK---ARKLVDDKRPFTQQKSLDE 111
Query: 159 E-QLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGE 217
E Q L +DQE E +E + + + +E E+ +++ +++ E +D +E
Sbjct: 112 ETQKLNEEDDQENNEHQEETQTDLIDDETSEKTQQDSPQDLSNEEATEANHFEDLLKEST 171
Query: 218 TLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENK----EEKQEKTQDSPSAQEL 271
D + E+ + +P + +TQE K E+K E+ D + QE+
Sbjct: 172 ESSDNHLDNPTES--------SDNHLDNPTETKTQETKTHFDEDKPEEITDDSNDQEI 221
Score = 32.7 bits (73), Expect = 0.022
Identities = 25/111 (22%), Positives = 50/111 (44%), Gaps = 18/111 (16%)
Query: 163 PTLNDQEEKEEVKEEEKEEVK------EEEKEEVKEEEKEEVKETPQEEKKPKDDETQEG 216
P + Q E E+ +++ E K ++K++ KE+ K+ ET E K
Sbjct: 1470 PDITKQYETEKTIKDKSLEAKLAKALGGDKKDDDKEKGKKPTAETKAESNKI-------- 1521
Query: 217 ETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPS 267
DK+V++ + E+ + ++ + D + E ++K+E+ QD S
Sbjct: 1522 ----DKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKEEKQDETS 1568
Score = 24.6 bits (52), Expect = 6.0
Identities = 22/92 (23%), Positives = 42/92 (44%), Gaps = 11/92 (11%)
Query: 110 LQKKLGSNASELEPSQNLDPTQEV-LETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQ 168
L K LG + + + + PT E E+N ++ V E N ++ L ++
Sbjct: 1491 LAKALGGDKKDDDKEKGKKPTAETKAESN--------KIDKDVAETAKNISEI--ALKNK 1540
Query: 169 EEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKE 200
+EK +E +++K+E K++E VK+
Sbjct: 1541 KEKSGDFVDENGNPIDDKKKEEKQDETSPVKQ 1572
>ref|NP_223830.1| putative [Helicobacter pylori J99]
Length = 383
Score = 51.6 bits (122), Expect = 5e-08
Identities = 55/229 (24%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 167 DQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSK 226
D + K+EV + +KE ++ E E+ ++ ++EK+ + E Q+ E K K +
Sbjct: 96 DDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQE 155
Query: 227 ELEAPQELEIPKE-ETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENS 285
+ + QE + ET Q +++E Q+ ++EKQ KT ++ + + + + + QEN
Sbjct: 156 KQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQ-KTNNT----QKDLVNKAEQNCQENH 210
Query: 286 NGQENKE---KTQESAEIPQD-KEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHEL 341
N K+ K + EI + K + T +T Q +P K S ++A EL
Sbjct: 211 NQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRG---SKAQEL 267
Query: 342 EKQEIAETPQDVE-IPQSQDKEVQELEIPKEETQENTE-TPQDVETPQE 388
IA +++E +P SQ ++++ + + E P+D +E
Sbjct: 268 ----IAYLQKELESLPYSQKAIAKQVDFYRPSSIAYLELDPRDFNATEE 312
Score = 48.9 bits (115), Expect = 3e-07
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 285 SNGQENKE--KTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKT-QESAEALQETQAHEL 341
++ Q KE + Q+ AE +D+ + + + + Q+ E K+KT QE + QE Q E
Sbjct: 95 ADDQSKKEVAQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQ 154
Query: 342 EKQEIAETPQDVE--IPQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESI 399
EKQ+ + Q +Q K QE + ++E Q+ T +D+ E+ QE+H +
Sbjct: 155 EKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQ-- 212
Query: 400 EDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESD 459
K +G + E E + +TPK + T + + ++ S
Sbjct: 213 ------FFIKKLGIKAGIAIEI-------EAECKTPKPTKTNQTPIQPKHLPNSKQPHSQ 259
Query: 460 KTSSPLELRLNLQDLLKSL 478
+ S EL LQ L+SL
Sbjct: 260 RGSKAQELIAYLQKELESL 278
Score = 48.5 bits (114), Expect = 4e-07
Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 45/256 (17%)
Query: 150 LVQEEPNNEEQLLPTLNDQE--EKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKK 207
L QEE E++ T +++ E+E+ K E++++ E+EK++ E + QE++K
Sbjct: 124 LEQEEQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTEQEKQKTSNIETNNQIKVEQEQQK 183
Query: 208 PKDDETQEGETLKDKEVSKE----------------------LEAPQELEIPKEETQEQD 245
+ ++ + T KD E +E E + PK Q
Sbjct: 184 TEQEKQKTNNTQKDLVNKAEQNCQENHNQFFIKKLGIKAGIAIEIEAECKTPKPTKTNQT 243
Query: 246 PIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAE------ 299
PI+ + N KQ +Q AQEL A L KE++ Q+ K +
Sbjct: 244 PIQPKHLPN--SKQPHSQRGSKAQELIAY--LQKELESLPYSQKAIAKQVDFYRPSSIAY 299
Query: 300 ---IPQDKEIQE-------VVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAET 349
P+D E + K QA+ LE+ K A L +Q+ L ++ A+
Sbjct: 300 LELDPRDFNATEEWQKENLKIRSKAQAKMLEMRSLKPDPQAH-LSTSQSLLLVQKIFADV 358
Query: 350 PQDVEIPQSQDKEVQE 365
+++++ + +K+V++
Sbjct: 359 SKEIKVVANTEKKVEK 374
Score = 47.0 bits (110), Expect = 1e-06
Identities = 47/197 (23%), Positives = 85/197 (42%), Gaps = 30/197 (15%)
Query: 248 KEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQ 307
KE Q KE + + + + S ELE QE K QE ++ K+KT+ Q+K+
Sbjct: 101 KEVAQAQKEAENARDRANKSGIELE--QEEQKTEQEKQKTEQEKQKTE------QEKQKT 152
Query: 308 EVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKE----- 362
E +KT+ ++ + +T + QE Q E EKQ+ T +D+ Q+ +
Sbjct: 153 EQEKQKTEQEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQ 212
Query: 363 --VQELEIPKE---ETQENTETPQDVET----------PQEKETQEDHYESIEDIPEPVM 407
+++L I E + +TP+ +T P K+ +++ +
Sbjct: 213 FFIKKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSKQPHSQRGSKAQELIAYLQ 272
Query: 408 AKAMGEELPFLNEAVAK 424
+ E LP+ +A+AK
Sbjct: 273 KEL--ESLPYSQKAIAK 287
Score = 45.4 bits (106), Expect = 3e-06
Identities = 41/197 (20%), Positives = 92/197 (45%), Gaps = 13/197 (6%)
Query: 149 ALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKP 208
A Q+E N + E+EE K E++++ E+EK++ ++E+ ++T QE++K
Sbjct: 104 AQAQKEAENARDRANKSGIELEQEEQKTEQEKQKTEQEKQKTEQEK----QKTEQEKQKT 159
Query: 209 KDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSA 268
+ QE + + E + +++ QE + ++E Q+ + +++ E+ ++ +
Sbjct: 160 E----QEKQKTSNIETNNQIKVEQEQQKTEQEKQKTNNTQKDLVNKAEQNCQENHNQFFI 215
Query: 269 QELEAMQELVKEIQENSNGQENKEKTQ---ESAEIPQDKEIQEVVTEKTQAQELEVPKEK 325
++L + EI+ + + Q + +P K Q ++AQEL +K
Sbjct: 216 KKLGIKAGIAIEIEAECKTPKPTKTNQTPIQPKHLPNSK--QPHSQRGSKAQELIAYLQK 273
Query: 326 TQESAEALQETQAHELE 342
ES Q+ A +++
Sbjct: 274 ELESLPYSQKAIAKQVD 290
>ref|NP_223195.1| cag island protein [Helicobacter pylori J99]
Length = 522
Score = 50.1 bits (118), Expect = 1e-07
Identities = 60/291 (20%), Positives = 126/291 (42%), Gaps = 35/291 (12%)
Query: 167 DQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSK 226
D + +E++E++K KE+E +E ++ +++ +E +EE+ + ++
Sbjct: 134 DAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLE--------NLTN 185
Query: 227 ELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSN 286
+ PQ L K E + E + ++ E+ E Q+ A L+ ++EL K+ E +
Sbjct: 186 AMSNPQNLSNNK-NLSELIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQAEEAV 244
Query: 287 GQENKE----KTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELE 342
Q K+ KT +S + P+D I+ ++ L V K AL + +
Sbjct: 245 RQRAKDKISIKTDKSQKSPEDNSIELSPSDSAWRTNLVVRTNK------ALYQFILRIAQ 298
Query: 343 KQEIA--------ETPQDVEIPQSQDKEVQELEIPKEE----TQENTETPQDVETPQEKE 390
K A E PQ E+ ++E+++ E K + QEN T +
Sbjct: 299 KDNFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQRELIKQENLNTTAYINRVMMAS 358
Query: 391 TQE--DHYESIEDIPEPVMAKAMGEELPFLNEAVAK--IPNNENDTETPKE 437
++ + + E+ + ++ +A E +++ A+ + +P N N + P++
Sbjct: 359 NEQIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEK 409
Score = 47.8 bits (112), Expect = 7e-07
Identities = 37/149 (24%), Positives = 77/149 (50%), Gaps = 8/149 (5%)
Query: 217 ETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQD--SPSAQELEAM 274
E LK K++ + P+ELE K+ +++ KE+ Q+ +++K+EK ++ + + LE +
Sbjct: 124 EFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENL 183
Query: 275 QELVKEIQENSNGQENKE--KTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEA 332
+ Q SN + E K Q E+ Q + +++ + E+ QA L+ +E ++ AE
Sbjct: 184 TNAMSNPQNLSNNKNLSELIKQQRENELDQMERLED-MQEQAQANALKQIEELNKKQAEE 242
Query: 333 LQETQAHE---LEKQEIAETPQDVEIPQS 358
+A + ++ + ++P+D I S
Sbjct: 243 AVRQRAKDKISIKTDKSQKSPEDNSIELS 271
Score = 43.5 bits (101), Expect = 1e-05
Identities = 47/249 (18%), Positives = 100/249 (39%), Gaps = 46/249 (18%)
Query: 158 EEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKE----EEKEEVKETPQE--------- 204
EEQ ++E KE+ ++ +K++ ++ ++E K E PQ
Sbjct: 142 EEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANLENLTNAMSNPQNLSNNKNLSE 201
Query: 205 -EKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQ 263
K+ +++E + E L+D + + A +++E + Q ++ +++ ++ K +K+Q
Sbjct: 202 LIKQQRENELDQMERLEDMQEQAQANALKQIE-ELNKKQAEEAVRQRAKDKISIKTDKSQ 260
Query: 264 DSPSAQELE------------------AMQELVKEIQENSNGQENKEKTQESAEIPQDKE 305
SP +E A+ + + I + N E PQ E
Sbjct: 261 KSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKDNFA--SAYLTVKLEYPQRHE 318
Query: 306 IQEVVTEKTQAQELEVPKEKTQESAEALQET----------QAHELEKQEIAETPQDVEI 355
+ V+ E+ + +E E +++ E L T + K++I E Q + +
Sbjct: 319 VSSVIEEELKKRE-EAKRQRELIKQENLNTTAYINRVMMASNEQIINKEKIREEKQKIIL 377
Query: 356 PQSQDKEVQ 364
Q++ E Q
Sbjct: 378 DQAKALETQ 386
>ref|NP_222831.1| putative [Helicobacter pylori J99]
Length = 412
Score = 48.9 bits (115), Expect = 3e-07
Identities = 66/292 (22%), Positives = 124/292 (41%), Gaps = 44/292 (15%)
Query: 105 EMLKVLQKKLGSNASELEPSQNLDPT-QEVLETNWDELENLGDLEALVQEEPNNEEQLLP 163
+ +++ Q+K +N S ++ Q T QE +TN E+E L QE + +
Sbjct: 125 KQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIE-------LEQERQKTNKSGIE 177
Query: 164 TLNDQEEKEEVKEEEKEEVKEEEKEEVK----------------EEEKEEVKETPQE-EK 206
N Q + E+ +++ ++E ++ K E++ +E+K+ +KET Q ++
Sbjct: 178 LANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQE 237
Query: 207 KPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSP 266
K ++ +E E + PK Q PI+ + N KQ ++Q
Sbjct: 238 KHGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPN--SKQPRSQRGS 295
Query: 267 SAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEV------VTEKTQAQELE 320
AQEL A L KE++ Q+ K Q P E+ VTE+ Q + L+
Sbjct: 296 KAQELIAY--LQKELESLPYSQKAIAK-QVDFYKPSSIAYLELDPRDFKVTEEWQKENLK 352
Query: 321 VPKEKTQESAEALQETQAHELEKQEI-------AETPQDVEIPQSQDKEVQE 365
+ + K Q ++ QAH Q + A+ +++E + +K+ ++
Sbjct: 353 I-RSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTEK 403
Score = 43.5 bits (101), Expect = 1e-05
Identities = 57/291 (19%), Positives = 121/291 (40%), Gaps = 42/291 (14%)
Query: 169 EEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKEL 228
E ++E KE K +K E++ + E+E+++ ++ E ++ + + G L + ++ E
Sbjct: 128 ELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELANSQIKAEQ 187
Query: 229 EAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN---S 285
E + EQ+ K E + E+Q++ + ++ ++ +KE ++N
Sbjct: 188 E---------RQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEK 238
Query: 286 NGQENKEKTQESAEI---------PQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQET 336
+GQ +K + I + K + T +T Q +P K S +
Sbjct: 239 HGQLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRG---S 295
Query: 337 QAHELEKQEIAETPQDVE-IPQSQDKEVQELEIPKEETQENTE-TPQDVETPQEKETQED 394
+A EL IA +++E +P SQ ++++ K + E P+D + +E + +
Sbjct: 296 KAQEL----IAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENL 351
Query: 395 HYES-----IEDIPEPVMAKAMGEELPF-------LNEAVAKIPNNENDTE 433
S + ++ P + L F +N+ + + N E TE
Sbjct: 352 KIRSKAQAKMLEMRNPQAHLPTSQSLLFVQKIFADINKEIEAVANTEKKTE 402
Score = 42.0 bits (97), Expect = 4e-05
Identities = 41/250 (16%), Positives = 105/250 (41%), Gaps = 15/250 (6%)
Query: 145 GDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEE----KEEVKEEEKEEVKEEEKEEVKE 200
GD++ ++ E +E + ++E+++ ++E K E++ E++ + + E+
Sbjct: 121 GDIDKQIELEQEKKEANKSGIKLEQERQKTEQERQKTNKSEIELEQERQKTNKSGIELAN 180
Query: 201 TPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQE 260
+ + ++ + QE + E+ E + + + ++ +EQ +ET++N +EK
Sbjct: 181 SQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQEKHG 240
Query: 261 KTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQ---ESAEIPQDKEIQEVVTEKTQAQ 317
+ + + + EI+ + + Q + +P K+ + ++AQ
Sbjct: 241 QLFIKKARIKTGITTGIAIEIEAECKTPKPAKTNQTPIQPKHLPNSKQPRS--QRGSKAQ 298
Query: 318 ELEVPKEKTQESAEALQETQAHELEKQE------IAETPQDVEIPQSQDKEVQELEIPKE 371
EL +K ES Q+ A +++ + + P+D ++ + KE ++ +
Sbjct: 299 ELIAYLQKELESLPYSQKAIAKQVDFYKPSSIAYLELDPRDFKVTEEWQKENLKIRSKAQ 358
Query: 372 ETQENTETPQ 381
PQ
Sbjct: 359 AKMLEMRNPQ 368
Score = 39.3 bits (90), Expect = 2e-04
Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 13/207 (6%)
Query: 223 EVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQ 282
++ K++E QE K+E + E+ ++ E++++KT S E E Q+ K
Sbjct: 122 DIDKQIELEQE----KKEANKSGIKLEQERQKTEQERQKTNKSEIELEQE-RQKTNKSGI 176
Query: 283 ENSNGQENKEKTQESAEIPQDK-EIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHEL 341
E +N Q E+ ++ E + K E+ E+ + + + ++ +E + ++ET+ +
Sbjct: 177 ELANSQIKAEQERQKTEQEKQKANKSEIELEQQKQKTINTQRDLIKEQKDFIKETEQNCQ 236
Query: 342 EKQE---IAETPQDVEIPQSQDKEVQELEIPKEETQENTETP-QDVETPQEKETQEDHYE 397
EK I + I E+ E E + + +TP Q P K+ +
Sbjct: 237 EKHGQLFIKKARIKTGITTGIAIEI-EAECKTPKPAKTNQTPIQPKHLPNSKQPRSQRGS 295
Query: 398 SIEDIPEPVMAKAMGEELPFLNEAVAK 424
+++ + + E LP+ +A+AK
Sbjct: 296 KAQELIAYLQKEL--ESLPYSQKAIAK 320
>ref|NP_223096.1| TRANSLATION INITIATION FACTOR IF-2 [Helicobacter pylori J99]
Length = 949
Score = 48.5 bits (114), Expect = 4e-07
Identities = 91/457 (19%), Positives = 174/457 (37%), Gaps = 101/457 (22%)
Query: 92 GFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALV 151
G E+K P + K+ + + +++ +Q PT+ + N D+L + L
Sbjct: 32 GLELKTNFKMTPEQAGKLYKYIVDGIKEQIQANQ---PTKNPKQDNKDDLNTAATPKPLA 88
Query: 152 QEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEV------------- 198
K+ K +KEE K + K + +E+K+E
Sbjct: 89 -------------------KKASKTPKKEETKAQPKPKKTKEKKKEAPAPIIKKKEIEIV 129
Query: 199 ----KETPQEEKKPKDDETQEGETLKDK--EVSKELEAPQELEIPKEETQEQDPIKEETQ 252
+TP E PK + E K K E+ K EA +L T
Sbjct: 130 NTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNKLTQSNTNTTNNANSASNVS 189
Query: 253 ENKEEKQEKTQDSPSAQELEAMQ-----ELVKEIQENSNGQEN-----KEKTQESAEIPQ 302
K+E E + + E ++ ++K E N EN K+ TQ +A I +
Sbjct: 190 NAKKEISEVKKQEQEIKRHENIKRRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFE 249
Query: 303 DKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKE 362
D I++ EK + + + K ++ + ++H+++ ++ +D + D E
Sbjct: 250 D--IKKEWQEKDKQETKKTKKPSKPKATPTAKNNKSHKIDFSDV----RDFKGNDIYDDE 303
Query: 363 VQELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAV 422
E+ + Q+N + +EKE +++ + + + + P++NEA
Sbjct: 304 TDEILLFDLHEQDNLNKEE-----EEKEARQNINDRVR----------VQRKNPWMNEAG 348
Query: 423 AKIPNNENDTETPKESVTETSKNENNTETPQE----KEESDKTSSPLELRLNLQDLLKS- 477
K ++ K+ V +N+N+ + Q EE + LNL D++K+
Sbjct: 349 IK-------RQSKKKRV---FRNDNSQKVIQSAIAIPEEVRVYEFAQKANLNLADVIKTL 398
Query: 478 ------------LNQESLKSLLENKTLSIKI--TLED 500
L+++S++ L E L I + TLE+
Sbjct: 399 FNLGLMVTKNDFLDKDSIEILAEEFHLEISVQNTLEE 435
Score = 41.6 bits (96), Expect = 5e-05
Identities = 51/230 (22%), Positives = 89/230 (38%), Gaps = 21/230 (9%)
Query: 67 KETISQNKNSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQN 126
+ET +Q K KK P ++ E++I F L K S++ + Q
Sbjct: 98 EETKAQPKPKKTKEKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQK 157
Query: 127 LDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEE 186
L Q+ E L L Q N N K+E+ E +K+E + +
Sbjct: 158 LQEIQKSREA----------LNKLTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKR 207
Query: 187 KEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDP 246
E +K + T K D+ E E + A E K+E QE+D
Sbjct: 208 HENIK-------RRTGFRVIKRNDETENETENSVTESKKPTQSAAAIFEDIKKEWQEKD- 259
Query: 247 IKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQE 296
K+ET++ K K K + +P+A+ ++ + ++++ ++T E
Sbjct: 260 -KQETKKTK--KPSKPKATPTAKNNKSHKIDFSDVRDFKGNDIYDDETDE 306
>ref|NP_223788.1| putative [Helicobacter pylori J99]
Length = 433
Score = 46.2 bits (108), Expect = 2e-06
Identities = 48/219 (21%), Positives = 91/219 (40%), Gaps = 20/219 (9%)
Query: 144 LGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEE----KEEVK 199
L +A +E Q + E+KEE +E +E + + E VK+ ++E
Sbjct: 37 LAQQKAFEKEVNEKRAQYQSYFKNLEQKEEALKERAKEQQAQFDEAVKQASALALQDERA 96
Query: 200 ETPQEEKKPKDDETQEGETLKDKEVSKELEAPQEL--------EIPKEETQEQDPIKEET 251
+ +E +K E Q+G L KE+ ++ + QEL + +E + + +K E
Sbjct: 97 KIIEEARKNAFLEQQKGLELLQKELDEKSKQVQELHQKEAEIERLKRENNEAESRLKAEN 156
Query: 252 QENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEK-TQESAEIPQDK---EIQ 307
++ EK E ++ E + K+ +E N+ K Q AE+ + E+Q
Sbjct: 157 EKKLNEKLELEREKIEKALHEKNELKFKQQEEQLEMLRNELKNAQRKAELSSQQFQGEVQ 216
Query: 308 EVVTEKTQAQELEVPK----EKTQESAEALQETQAHELE 342
E+ E+ Q+ + +K Q + +Q E +
Sbjct: 217 ELAIEEFLRQKFPLDSVEEIKKGQRGGDCIQVVHTREFQ 255
>ref|NP_223773.1| putative [Helicobacter pylori J99]
Length = 263
Score = 46.2 bits (108), Expect = 2e-06
Identities = 45/189 (23%), Positives = 85/189 (44%), Gaps = 38/189 (20%)
Query: 147 LEALVQEEPNNE-EQLLPTLNDQEEK------EEVKEEEKEEVKEEEKEEVKE--EEKEE 197
L L+ E N E E++L LN ++E+ E++ E+K E E+ E+ + E KEE
Sbjct: 22 LYGLLLERHNKEAEKILLDLNKKDEQAIDLNLEDLPSEKKNEKIEKVTEKQGDFLEPKEE 81
Query: 198 VKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEE 257
KE P+E + + + DK K+ Q+N++E
Sbjct: 82 PKEEPEESLEDIFSSLNDFQEKTDKNAQKD-----------------------EQKNEQE 118
Query: 258 KQEKTQDSPSAQELEAMQELVKEIQENSNG-----QENKEKTQESAEIPQDKEIQEVVTE 312
+Q + ++ ++ + QE++K +Q+N N + K KT + +IP+ + E +
Sbjct: 119 EQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLD-LQIPKQDGVDEKAYQ 177
Query: 313 KTQAQELEV 321
+ AQ ++
Sbjct: 178 EWYAQIYQI 186
Score = 37.0 bits (84), Expect = 0.001
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 16/124 (12%)
Query: 102 LPTEML-KVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQ 160
LP+E + ++K LEP + +P +E E+ D +L D + + +EQ
Sbjct: 56 LPSEKKNEKIEKVTEKQGDFLEPKE--EPKEEPEESLEDIFSSLNDFQEKTDKNAQKDEQ 113
Query: 161 LLPTLNDQEEKEEVKEEEKEEVKEEEKEEVK---------EEEKEEVKETPQEEKKPKDD 211
N+QEE+ ++E+++ + +E +E +K ++ E VK + + PK D
Sbjct: 114 K----NEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQD 169
Query: 212 ETQE 215
E
Sbjct: 170 GVDE 173
Score = 35.0 bits (79), Expect = 0.004
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 146 DLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEE 205
+LE L E+ N E++ Q + E KEE KEE +E ++ + K +
Sbjct: 52 NLEDLPSEKKN--EKIEKVTEKQGDFLEPKEEPKEEPEESLEDIFSSLNDFQEKTDKNAQ 109
Query: 206 KKPKDDETQEGETLKDKEVSKELEAPQEL-----EIPKEETQEQDPIKEETQENKEEKQE 260
K + +E +E L++++ K+ + QE+ + + TQ+ + +K +T + + KQ+
Sbjct: 110 KDEQKNEQEEQRRLREQQRLKQNQENQEMLKGLQQNLNQFTQKLESVKNKTLDLQIPKQD 169
>ref|NP_223610.1| putative [Helicobacter pylori J99]
Length = 267
Score = 45.8 bits (107), Expect = 3e-06
Identities = 57/274 (20%), Positives = 115/274 (41%), Gaps = 21/274 (7%)
Query: 189 EVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKE--LEAPQELEIPKEETQEQDP 246
E+ +KE P +K KD + + L DKE + L +E K + + +
Sbjct: 10 EISHLDKEIDSLEPLIREKRKDLD----KALNDKEAKNKAILNLEEEKLALKLQVSKNEQ 65
Query: 247 IKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEI 306
++T Q+K + S +EL ++ + ++I + + Q N+E EI E
Sbjct: 66 TLQDTNAKIASIQKKMSEIKSERELRSLN-IEEDIAKERSNQANREIENLQNEIKHKSEK 124
Query: 307 QEVVT-EKTQAQELEVPKEKTQES-AEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQ 364
QEV+ E + ++L + E E+ + ++ETQ +K+E E+ + + ++
Sbjct: 125 QEVLKKEMLELEKLALELENLVENEVKNIKETQQIIFKKKE--------ELVEKTEPKIY 176
Query: 365 ELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAK 424
+NT + T +++ + I V+ P+ +
Sbjct: 177 SFYERIRRWAKNTS----IVTIKKQACGGCFIRLNDKIYAEVLTSGDMITCPYCGRILYA 232
Query: 425 IPNNENDTETPKESVTETSKNENNTETPQEKEES 458
+E++ + PKES + S+ E+ E+ +E +ES
Sbjct: 233 ESTHESNAQPPKESQPKESQEESQEESQEESQES 266
Score = 40.0 bits (92), Expect = 1e-04
Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 16/263 (6%)
Query: 142 ENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKET 201
+ + LE L++E+ + L LND+E K + +EE + + K E+ +
Sbjct: 16 KEIDSLEPLIREK---RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 72
Query: 202 PQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEK 261
+ K E + L+ + +++ + + +E Q+ IK ++++ + K+E
Sbjct: 73 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKHKSEKQEVLKKEM 132
Query: 262 TQDSPSAQELEAMQE-LVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELE 320
+ A ELE + E VK I+E Q +K +E E + K + A+
Sbjct: 133 LELEKLALELENLVENEVKNIKETQ--QIIFKKKEELVEKTEPKIYSFYERIRRWAKNTS 190
Query: 321 VPKEKTQESAEAL----QETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQEN 376
+ K Q + A L ++ P I ++ + PKE
Sbjct: 191 IVTIKKQACGGCFIRLNDKIYAEVLTSGDMITCPYCGRILYAESTHESNAQPPKE----- 245
Query: 377 TETPQDVETPQEKETQEDHYESI 399
P++ + ++E+QE+ ES+
Sbjct: 246 -SQPKESQEESQEESQEESQESV 267
>ref|NP_223515.1| putative [Helicobacter pylori J99]
Length = 541
Score = 45.4 bits (106), Expect = 3e-06
Identities = 36/129 (27%), Positives = 66/129 (50%), Gaps = 10/129 (7%)
Query: 171 KEEVKEEEKEEVKEEEKEEVKEE--EKEEVKETPQEEKKPKDDETQEGET----LKDKEV 224
+E K +E ++ EE K + + E+EEVK E K +++ Q+GET K+ +
Sbjct: 417 QERHKAKENKQPLEENKVKPRNSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPI 476
Query: 225 SKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN 284
SKE A +E P + +E+ +KEE ++ K E++ + + + + E + KE++E
Sbjct: 477 SKENAAKKEAPKPSSK-EEKRRLKEEKKKAKAEQRAREFEQRAREHQERDE---KELEER 532
Query: 285 SNGQENKEK 293
E +K
Sbjct: 533 RKALEMNKK 541
Score = 38.1 bits (87), Expect = 5e-04
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKE-EVKETP---- 202
+A ++P E ++ P N E+EEVK E K++ + E K E K TP
Sbjct: 421 KAKENKQPLEENKVKPR-NSGFEEEEVKTRRPEPTKDQNNAIQQGETKNNESKNTPISKE 479
Query: 203 --QEEKKPKDDETQEGETLK-DKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQ 259
+++ PK +E LK +K+ +K + +E E E QE+D + E + E
Sbjct: 480 NAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALEMN 539
Query: 260 EK 261
+K
Sbjct: 540 KK 541
Score = 33.1 bits (74), Expect = 0.017
Identities = 32/151 (21%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 189 EVKEEEKEEVKETP---QEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQD 245
E K +K E P QE K K+++ + L++ +V +E E+ +T+ +
Sbjct: 400 EFKTSQKGEKGNAPIYLQERHKAKENK----QPLEENKVKPRNSGFEEEEV---KTRRPE 452
Query: 246 PIKEETQ--ENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQD 303
P K++ + E K +++++P ++E A +E K S+ +E + +E + +
Sbjct: 453 PTKDQNNAIQQGETKNNESKNTPISKENAAKKEAPKP----SSKEEKRRLKEEKKKAKAE 508
Query: 304 KEIQEVVTEKTQAQELEVPKEKTQESAEALQ 334
+ +E + QE + +++ +E +AL+
Sbjct: 509 QRAREFEQRAREHQERD--EKELEERRKALE 537
Score = 30.8 bits (68), Expect = 0.084
Identities = 33/142 (23%), Positives = 64/142 (44%), Gaps = 12/142 (8%)
Query: 266 PSAQELEAMQELVKE-----IQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELE 320
P A E + Q+ K +QE +ENK+ +E+ P++ +E E+ + + E
Sbjct: 396 PHAAEFKTSQKGEKGNAPIYLQERHKAKENKQPLEENKVKPRNSGFEE---EEVKTRRPE 452
Query: 321 VPKEKTQESAEALQETQAHELEKQEIA-ETPQDVEIPQSQDKEVQELEIPKEETQENTET 379
K+ Q +A ET+ +E + I+ E E P+ KE ++ + +E+ + E
Sbjct: 453 PTKD--QNNAIQQGETKNNESKNTPISKENAAKKEAPKPSSKE-EKRRLKEEKKKAKAEQ 509
Query: 380 PQDVETPQEKETQEDHYESIED 401
+ +E QE + +E+
Sbjct: 510 RAREFEQRAREHQERDEKELEE 531
>ref|NP_223787.1| putative [Helicobacter pylori J99]
Length = 759
Score = 45.1 bits (105), Expect = 4e-06
Identities = 83/377 (22%), Positives = 159/377 (42%), Gaps = 53/377 (14%)
Query: 170 EKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKD--DETQEGETLKDKEVSKE 227
E E E +KE + +E ++++K E +V T ++EK+ KD D + K++E KE
Sbjct: 118 ENLEKIESKKESINKENEKKIKNEASLQVL-TQKKEKEEKDFTDSCWKNLYKKNEEEFKE 176
Query: 228 LEAPQELEIPKEETQEQDPIKEETQENK---------EEKQEKTQ--DSPSAQELEAMQE 276
+ LE K + + + I +E + +K E+ +EK + S + EL ++
Sbjct: 177 I-----LEGFKRKEKFKGKILKEFENDKHNQSEIVGLEKLKEKIEIVFSKNQTELALLEC 231
Query: 277 LVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQET 336
+ + N ++K S ++ I+ + E AQ E K+ + +ET
Sbjct: 232 DLTDFDSIENHSIWEQKIVGSGDVAIANLIKTLSNEDWVAQGREYVKDNS-ICPFCQKET 290
Query: 337 QAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQD-VETPQEKETQEDH 395
E +KQ E+ D +S D + E +T E E + ++T Q +
Sbjct: 291 ITEEFKKQ--LESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEIIKTEQNNSQTKLD 348
Query: 396 YESIEDIPEPVMAKAMGEELPFLNEAVA-----KIPNNENDTETPKESVTETSK---NEN 447
E+++ I E + +K + ++++ K+ +N+N+ + K+ + + ++ N N
Sbjct: 349 TENLKRIIETLRSKIKANQQKMIDKSKEMSRNFKLDSNKNEIDAIKDLIKKANEQITNHN 408
Query: 448 NTETPQEK---------------------EESDKTSSPLELRLNLQDLLKSLNQESLKSL 486
T EK +E +K LE +N + S NQE +K
Sbjct: 409 ETIKDIEKQKKSCKEQTWKFLINEFKSDIQEYNKKYCGLEKGINNLEKEISENQEKVKK- 467
Query: 487 LENKTLSIKITLEDKKP 503
LEN+ ++ + KP
Sbjct: 468 LENEIKELEKNMVSIKP 484
Score = 41.2 bits (95), Expect = 6e-05
Identities = 48/229 (20%), Positives = 104/229 (44%), Gaps = 42/229 (18%)
Query: 17 ESVSKKLELPIENF--NHYQELSARLKENQEWLLIADDECLEKLDQVDWLELKETISQNK 74
E+++++ + +E++ YQE + +K+ +E DE LE+LD++ ++ ++ SQ K
Sbjct: 289 ETITEEFKKQLESYFDTSYQESTDTIKKMKEDYTNKTDEALERLDEI--IKTEQNNSQTK 346
Query: 75 NSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEVL 134
K+ +E KI K Q+K+ + E+ + LD
Sbjct: 347 LDTENLKR------IIETLRSKI----------KANQQKMIDKSKEMSRNFKLD------ 384
Query: 135 ETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEE 194
+N +E++ + DL E+ N + + + +++K+ KE+ + + E K +++E
Sbjct: 385 -SNKNEIDAIKDLIKKANEQITNHNETIKDI--EKQKKSCKEQTWKFLINEFKSDIQEYN 441
Query: 195 KEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQE 243
K K ++G +KE+S+ E ++LE +E ++
Sbjct: 442 K-------------KYCGLEKGINNLEKEISENQEKVKKLENEIKELEK 477
>ref|NP_223706.1| histidine kinase [Helicobacter pylori J99]
Length = 815
Score = 45.1 bits (105), Expect = 4e-06
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 27/168 (16%)
Query: 212 ETQEGETLKDKEVSKELEA--PQELEIPKEETQEQD-PIKEETQENKEEKQE--KTQDSP 266
+T G+ + +EV K+L+A Q LE KE + ++ P KE +ENKE+ +E K +P
Sbjct: 110 DTNNGKENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTP 169
Query: 267 SAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKT 326
+ + L + L E + + SAE + EI+ ++ ++ +A +
Sbjct: 170 TTENLTSDNPLADE--------PDLDYANMSAE-EVEAEIERLLNKRQEADK-------- 212
Query: 327 QESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQ 374
+ A+ QE QA KQE+A E P+++ + + ++PK ET+
Sbjct: 213 ERRAQKKQEDQAKP--KQEVAPAK---ETPKTETPKTETRKVPKAETK 255
Score = 42.4 bits (98), Expect = 3e-05
Identities = 35/138 (25%), Positives = 65/138 (46%), Gaps = 11/138 (7%)
Query: 252 QENKEEKQEKTQDSPSAQELEAMQEL--VKEIQENSNGQENKEKTQESAEIPQDKEIQEV 309
+EN+ E+ K + ++Q LE +E KE E +ENKEK +E + + + +
Sbjct: 115 KENEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENL 174
Query: 310 VTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIP 369
++ A E ++ + SAE + E E + + Q+ + + K+ ++ P
Sbjct: 175 TSDNPLADEPDL--DYANMSAEEV------EAEIERLLNKRQEADKERRAQKKQEDQAKP 226
Query: 370 KEETQENTETPQDVETPQ 387
K+E ETP+ ETP+
Sbjct: 227 KQEVAPAKETPK-TETPK 243
Score = 41.6 bits (96), Expect = 5e-05
Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 3/168 (1%)
Query: 156 NNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQE 215
N E+++ L + +E KE ++EVK+E KE+ KE + K P +
Sbjct: 117 NEIEEVVKKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTENLTS 176
Query: 216 GETLKDK---EVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELE 272
L D+ + + E EI + + Q+ KE + K+E Q K + + +
Sbjct: 177 DNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQEDQAKPKQEVAPAKET 236
Query: 273 AMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELE 320
E K E K K + E + I T + + L+
Sbjct: 237 PKTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVRVDVRRLD 284
Score = 38.5 bits (88), Expect = 4e-04
Identities = 51/213 (23%), Positives = 92/213 (42%), Gaps = 30/213 (14%)
Query: 302 QDKEIQEVVTEKTQA---QELEVPKEK--TQESAEALQETQAHELEKQEIA--ETPQDVE 354
++ EI+EVV +K QA Q LE KE T+E+ E + + E K+E+ +TP
Sbjct: 115 KENEIEEVV-KKLQAITSQNLEGAKETSGTKEAPEKEVKKENKEKAKEEVKANKTPTTEN 173
Query: 355 I----PQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKA 410
+ P + + ++ + EE + E + +KE + + ED +P A
Sbjct: 174 LTSDNPLADEPDLDYANMSAEEVEAEIERLLNKRQEADKERRAQKKQ--EDQAKPKQEVA 231
Query: 411 MGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLE--LR 468
+E P TETPK + K E + + EE+ S +E +R
Sbjct: 232 PAKETP--------------KTETPKTETRKVPKAETKAKAKADTEENKAPSIGVEQTVR 277
Query: 469 LNLQDLLKSLNQESLKSLLENKTLSIKITLEDK 501
++++ L +N L +N+ + I +E++
Sbjct: 278 VDVRRLDHLMNLIGELVLGKNRLIRIYSDVEER 310
>ref|NP_223560.1| putative [Helicobacter pylori J99]
Length = 524
Score = 44.7 bits (104), Expect = 6e-06
Identities = 60/272 (22%), Positives = 111/272 (40%), Gaps = 30/272 (11%)
Query: 147 LEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEK 206
L++L ++EP N+E P N+++ + + +K ++ K+ EK + Q
Sbjct: 247 LQSLEKKEPQNKEHANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKPEKTPIHAKTQTIA 306
Query: 207 KPKDDETQEGETLKDKEVSKEL--------EAPQELEIPKEETQEQDPIKEETQENKEEK 258
E LK + + AP LE +E+T+E KE+ +E
Sbjct: 307 PSATPENAPKIPLKTLPLMPLIGANPPPNDNAPTPLE-KEEKTKEISDNKEKAKETNSSA 365
Query: 259 Q--------EKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQD---KEIQ 307
Q +KT D+ S E ++ ++++ QE +E ++I D KE+
Sbjct: 366 QSVQNTQASDKTSDNKSTTPKETIRHFTQQLK-----QEIQEYKPPMSKISMDLFPKELG 420
Query: 308 EV-VTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQE- 365
+V VT + + L+V S + + Q +L+ A + V++ SQD ++
Sbjct: 421 KVEVTIQKVGKNLKVSVISHNNSLQTFLDNQ-QDLKNSLNALGFEGVDLSFSQDSSKEQQ 479
Query: 366 --LEIPKEETQENTETPQDVETPQEKETQEDH 395
+ PKE +E TP + + DH
Sbjct: 480 APKDQPKEPFKEQELTPLKENALKSYQENTDH 511
Score = 30.4 bits (67), Expect = 0.11
Identities = 60/303 (19%), Positives = 96/303 (30%), Gaps = 74/303 (24%)
Query: 171 KEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKD--KEVSKEL 228
KE + ++ KE+ K EK + KD Q+ TLKD
Sbjct: 53 KESPNHSALKATPKDAKEDAKALEKTPTLPHQHAQNLAKD---QQAPTLKDWLNHPKTHP 109
Query: 229 EAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQ 288
AP E + E E +P +T K EK + ++ + I N
Sbjct: 110 TAPHEAQHETHEANETNP---KTPNETLSKNEKKPNEVASNAHQTNLPNKNPITPNHANN 166
Query: 289 ENKEKTQESAEIPQDKEIQEVVT-------EKTQAQELEVPKEKTQESAE---ALQETQA 338
K T + + K ++++ T + Q P+ K +A AL+ TQA
Sbjct: 167 AIKNPTTPTHNVKDPKTLKDIQTLSQKHDLNASNIQAATTPENKNPLNASDHLALKTTQA 226
Query: 339 ---HELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDH 395
H L K + T + QS +K+ PQ KE
Sbjct: 227 SINHTLTKNDAKNTANLSSVLQSLEKK----------------------EPQNKEH---- 260
Query: 396 YESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEK 455
A PNNE T KE++ + + T + ++
Sbjct: 261 ---------------------------ANPPNNEKKTPPLKEALQMNAIKRDKTLSKKKP 293
Query: 456 EES 458
E++
Sbjct: 294 EKT 296
Score = 28.1 bits (61), Expect = 0.54
Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 96 KIKKPFLPTEM--LKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEA---- 149
KI P E+ ++V +K+G N S N + Q L+ D +L L
Sbjct: 409 KISMDLFPKELGKVEVTIQKVGKNLKVSVISHN-NSLQTFLDNQQDLKNSLNALGFEGVD 467
Query: 150 LVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQE 204
L + +++EQ P + KE KE+E +KE + +E E +ET +
Sbjct: 468 LSFSQDSSKEQQAPK---DQPKEPFKEQELTPLKENALKSYQENTDHENQETSMQ 519
Score = 26.9 bits (58), Expect = 1.2
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 8/47 (17%)
Query: 222 KEVSKELEAPQELEIPKEETQEQD--PIKEET----QENKEEKQEKT 262
++ SKE +AP++ PKE +EQ+ P+KE QEN + + ++T
Sbjct: 472 QDSSKEQQAPKDQ--PKEPFKEQELTPLKENALKSYQENTDHENQET 516
Score = 24.3 bits (51), Expect = 7.9
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 177 EEKEEVKEEEKEEVKEEEKEEVKETP-QEEKKPKDDETQE 215
+E++ K++ KE KE+E +KE + ++ D E QE
Sbjct: 476 KEQQAPKDQPKEPFKEQELTPLKENALKSYQENTDHENQE 515
>ref|NP_223054.1| septum formation protein [Helicobacter pylori J99]
Length = 844
Score = 44.3 bits (103), Expect = 7e-06
Identities = 55/219 (25%), Positives = 92/219 (41%), Gaps = 32/219 (14%)
Query: 164 TLNDQEEKEEVKEEEKEEVKE---EEKEEVKEEEKEEVKETPQEEKKPKDDETQEG---- 216
T +D ++KE ++EKE +KE +E EE TP + E QEG
Sbjct: 179 TPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTL-NNSEPQEGLVQI 237
Query: 217 -------ETLKDKEVSKELEAPQELEIPKEETQEQDP-IKEETQENKEE----KQEKTQD 264
T+ K + L+ PK+ET+E++P +K+ET + T++
Sbjct: 238 SPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLKKETPTTLKPIMPISASNTEN 297
Query: 265 SPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVT----EKTQAQELE 320
+ + +KE + QEN +K I ++KE Q + T A++
Sbjct: 298 HDKTENHKTPNHPIKEDDLQESPQENPQKENIEENI-EEKETQNAPSFSPLTLTSAKKPV 356
Query: 321 VPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQ 359
+ KE E+ E L E++K P+D E+P +Q
Sbjct: 357 MVKE-LSENKEILDGLDYGEVQK------PKDYELPTTQ 388
Score = 42.7 bits (99), Expect = 2e-05
Identities = 66/281 (23%), Positives = 102/281 (35%), Gaps = 48/281 (17%)
Query: 205 EKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQE-KTQ 263
E P D + +E K+KE KE + P EE+ P T N E QE Q
Sbjct: 177 ENTPSDSQKKETNNDKEKENLKENPIDENHNTPNEESFLAIPTPYNTTLNNSEPQEGLVQ 236
Query: 264 DSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPK 323
SP + + +N + K + P K +E T +
Sbjct: 237 ISPHPPTHYTIYPKRNRFDDLTNPTLKEPKQETKEREPTLK--KETPTTLKPIMPISASN 294
Query: 324 EKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDV 383
+ + E +T H +++ ++ E+PQ E PQ KE +EN E
Sbjct: 295 TENHDKTEN-HKTPNHPIKEDDLQESPQ--ENPQ------------KENIEENIE----- 334
Query: 384 ETPQEKETQEDHYES---IEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVT 440
EKETQ S + +PVM K + E L+ + + + PK+
Sbjct: 335 ----EKETQNAPSFSPLTLTSAKKPVMVKELSENKEILDGL------DYGEVQKPKDYEL 384
Query: 441 ETSKNENNT---ETPQEKEESDKTSSPLELRLNLQDLLKSL 478
T++ N ET ++ E D+ +QDLL L
Sbjct: 385 PTTQLLNAVCLKETSLDENEIDQ---------KIQDLLSKL 416
Score = 37.0 bits (84), Expect = 0.001
Identities = 38/160 (23%), Positives = 66/160 (40%), Gaps = 17/160 (10%)
Query: 116 SNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVK 175
+N + EP Q + L+ E L+ ++ +N E T N + +K
Sbjct: 258 TNPTLKEPKQETKEREPTLKK-----ETPTTLKPIMPISASNTENHDKTENHKTPNHPIK 312
Query: 176 EEEKEEVKEEEKEEVKEEEKEEVKETPQ----------EEKKP-KDDETQEGETLKDKEV 224
E++ +E +E ++ EE E KET KKP E E + + D
Sbjct: 313 EDDLQESPQENPQKENIEENIEEKETQNAPSFSPLTLTSAKKPVMVKELSENKEILDGLD 372
Query: 225 SKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQD 264
E++ P++ E+P + +K ET ++ E +K QD
Sbjct: 373 YGEVQKPKDYELPTTQLLNAVCLK-ETSLDENEIDQKIQD 411
>ref|NP_222772.1| putative [Helicobacter pylori J99]
Length = 220
Score = 44.3 bits (103), Expect = 7e-06
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 10/211 (4%)
Query: 157 NEEQLLPTLNDQEEKEEVKEEEKEEVKEE------EKEEVKEEEKEEVKETPQEEKKPKD 210
N + L + N E+ K E E+ EE EKE ++ E K + K+ +
Sbjct: 12 NPKDALKSTNFHEK--HTKPTETTELVEENKALTTEKERLERENKNLTADKENLTKEKTE 69
Query: 211 DETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQE 270
+ Q E K+V + +A E ++ KE+T+ ++ K T+ A E
Sbjct: 70 LQKQVNELKNSKQVLENEKADWLREKENLTKDRENLTKEKTELTEKNKVLTTEKERLATE 129
Query: 271 LEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESA 330
E + + E Q+ N +N ++ E+ + E ++ T+KT E + T E
Sbjct: 130 KENLTKEKTESQKQVNELKNSKQVLENEKADLTNENTKLKTDKTDLTEKN--QRLTTEKT 187
Query: 331 EALQETQAHELEKQEIAETPQDVEIPQSQDK 361
E + EK+ +A +++ Q K
Sbjct: 188 ELNNKITGLATEKERLAADKENLTKESRQRK 218
Score = 37.7 bits (86), Expect = 7e-04
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 33/230 (14%)
Query: 250 ETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEV 309
+TQEN ++ + T + ELV+E + + +E E+ E+ + DKE +
Sbjct: 8 DTQENPKDALKSTNFHEKHTKPTETTELVEENKALTTEKERLER--ENKNLTADKE--NL 63
Query: 310 VTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIP 369
EKT EL+ + + S + L+ +A L ++E ++D+E +
Sbjct: 64 TKEKT---ELQKQVNELKNSKQVLENEKADWLREKE----------NLTKDRE----NLT 106
Query: 370 KEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNE 429
KE+T E TE + + T +E+ E + E + L A + N
Sbjct: 107 KEKT-ELTEKNKVLTTEKERLATEKENLTKEKTESQKQVNELKNSKQVLENEKADLTNEN 165
Query: 430 NDTETPKESVTE------TSKNENNTE-----TPQEKEESDKTSSPLELR 468
+T K +TE T K E N + T +E+ +DK + E R
Sbjct: 166 TKLKTDKTDLTEKNQRLTTEKTELNNKITGLATEKERLAADKENLTKESR 215
>ref|NP_223645.1| putative [Helicobacter pylori J99]
Length = 2231
Score = 43.1 bits (100), Expect = 2e-05
Identities = 68/278 (24%), Positives = 117/278 (41%), Gaps = 67/278 (24%)
Query: 18 SVSKKLELPIENFNHYQELSAR-----LKEN--QEWLLIADDECLEKL----------DQ 60
S ++ + LP ++ H+ LSA+ L+EN QE L+++ + LE L +
Sbjct: 194 SSNQSVLLPAQSRLHHAGLSAQNGLRDLEENRDQEGRLLSNLDNLESLLNAIRNNTIASE 253
Query: 61 VDWLE-LKETISQN---KNSV--CMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKL 114
D+ L E I N K+S+ K + F + F++KI P ++L++L+ +L
Sbjct: 254 PDFRSRLLEAIQNNDPLKDSIVGAQLLKDPTTKIFYDKFQLKIS----PKKVLEILENRL 309
Query: 115 -----------------GSNASELEPSQN---LDPTQEVLETNWDELENLGDLEALVQEE 154
S A +L N L+PTQE T D L + + +E
Sbjct: 310 KKSIETTNETLNAFNVLDSQAIDLNAISNSVGLNPTQESKIT--DNSVELNNAQEQTAQE 367
Query: 155 PNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEE------KEEVKETPQEEKKP 208
+EQ QE+ + + +++ +E+ +E +E K+E TP P
Sbjct: 368 QTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQEQDTQENAPTTIKQETPITPAIPLNP 427
Query: 209 KDD------------ETQEGETLKDKEVSKELEAPQEL 234
K D +T+ +K E+ KEL+A QE+
Sbjct: 428 KIDFKPSEEVLIKGAKTRYKANIKAIELLKELQAKQEI 465
Score = 38.5 bits (88), Expect = 4e-04
Identities = 47/176 (26%), Positives = 73/176 (40%), Gaps = 25/176 (14%)
Query: 214 QEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKE--ETQENKEEKQ-EKTQDSPSAQE 270
Q + LKD V +L +I ++ Q + K+ E EN+ +K E T ++ +A
Sbjct: 265 QNNDPLKDSIVGAQLLKDPTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFN 324
Query: 271 LEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESA 330
+ Q + NS G TQES +I + E AQE ++ TQE
Sbjct: 325 VLDSQAIDLNAISNSVGLN---PTQES-------KITDNSVELNNAQEQTAQEQTTQEQT 374
Query: 331 EALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETP 386
Q TQ ++Q +Q++ QE +++TQEN T ETP
Sbjct: 375 TQEQTTQEQTTQEQ------------TTQEQTTQEQTTQEQDTQENAPTTIKQETP 418
Score = 38.5 bits (88), Expect = 4e-04
Identities = 50/260 (19%), Positives = 111/260 (42%), Gaps = 39/260 (15%)
Query: 134 LETNWDE----LENLGDLEAL--------VQEEPNNEEQLLPTLNDQEEKEE-------V 174
LE N D+ L NL +LE+L + EP+ +LL + + + ++ +
Sbjct: 221 LEENRDQEGRLLSNLDNLESLLNAIRNNTIASEPDFRSRLLEAIQNNDPLKDSIVGAQLL 280
Query: 175 KEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEV---------- 224
K+ + ++ + ++ ++ E+ E ++ +ET + D +
Sbjct: 281 KDPTTKIFYDKFQLKISPKKVLEILENRLKKSIETTNETLNAFNVLDSQAIDLNAISNSV 340
Query: 225 -------SKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQEL 277
SK + EL +E+T ++ +E+T + + +++ TQ+ + QE ++
Sbjct: 341 GLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQ-TTQEQTTQEQT 399
Query: 278 VKEIQENSNGQEN-KEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQET 336
+E N K++T + IP + +I +E+ + + + ++ E L+E
Sbjct: 400 TQEQDTQENAPTTIKQETPITPAIPLNPKIDFKPSEEVLIKGAKTRYKANIKAIELLKEL 459
Query: 337 QA-HELEKQEIAETPQDVEI 355
QA E+ K + T ++ EI
Sbjct: 460 QAKQEILKGDYYATLKEQEI 479
Score = 37.4 bits (85), Expect = 9e-04
Identities = 44/180 (24%), Positives = 76/180 (41%), Gaps = 29/180 (16%)
Query: 239 EETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQ--- 295
EE ++Q+ +N E +++ A E + L++ IQ N +++ Q
Sbjct: 222 EENRDQEGRLLSNLDNLESLLNAIRNNTIASEPDFRSRLLEAIQNNDPLKDSIVGAQLLK 281
Query: 296 -ESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQET---------QAHELEK-- 343
+ +I DK ++ +K LE+ + + ++S E ET QA +L
Sbjct: 282 DPTTKIFYDKFQLKISPKKV----LEILENRLKKSIETTNETLNAFNVLDSQAIDLNAIS 337
Query: 344 --------QEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDV--ETPQEKETQE 393
QE T VE+ +Q++ QE ++ TQE T Q +T QE+ TQE
Sbjct: 338 NSVGLNPTQESKITDNSVELNNAQEQTAQEQTTQEQTTQEQTTQEQTTQEQTTQEQTTQE 397
Score = 29.6 bits (65), Expect = 0.19
Identities = 33/189 (17%), Positives = 79/189 (41%), Gaps = 6/189 (3%)
Query: 181 EVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEE 240
E K + E+ + K + E + + E + + +E++ EI EE
Sbjct: 1987 ETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEEVKL--RAEIKSEE 2044
Query: 241 TQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQ----ENKEKTQE 296
++ + KE + K ++ QEL+ ++ L + + ++ + + K + +
Sbjct: 2045 SKYKAFNKEHYFNEESLKNNASKLDYLKQELKDLETLQRSVIIPTHTEIKLYDLKNEESK 2104
Query: 297 SAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIP 356
E+ + KE++ + + ++EL K K Q A Q + + K++ A + +
Sbjct: 2105 DYELIKVKEVEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNTLFVN 2164
Query: 357 QSQDKEVQE 365
+ +D ++ E
Sbjct: 2165 EEEDYKLLE 2173
Score = 25.8 bits (55), Expect = 2.7
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 180 EEVKEEEKEEVKEE-EKEEV--KETPQEEKKPKD 210
EE+KEEE ++ E++E+ K P+E KKP +
Sbjct: 1459 EELKEEELVNAEKNFERQELAYKNNPRETKKPNE 1492
Score = 24.6 bits (52), Expect = 6.0
Identities = 39/172 (22%), Positives = 72/172 (41%), Gaps = 43/172 (25%)
Query: 65 ELKETISQNKNSVCMYKKGNEA--QPFLEGFEV--KIKKPFLPTEMLKVLQKKLGSNASE 120
E+KE I+Q + K E L+ E+ I P++PT+ L+ +L +N E
Sbjct: 1129 EVKEAINQGVEGLEANVKDLELIIPKDLKATEIMANINSPWIPTQYLEEFLMELSANHYE 1188
Query: 121 LEPS-----------------QNLDPTQEVLETNWDELENLGDL-------------EAL 150
+ ++L EV N +EL L + E+L
Sbjct: 1189 KQYGDKMTDYQLSNLKEDIKIEHLSGAYEVFVRN-NELNELYGIRHKDKPHSYKVPFESL 1247
Query: 151 VQEEPNNEE------QLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKE 196
+ + NN++ Q+ P ND +++ + +EE+ + ++ EE+KE K+
Sbjct: 1248 LNKVLNNKDLSVKYAQVDP--NDPKKEIFITDEEQSNLARQKAEELKEAFKD 1297
Score = 24.3 bits (51), Expect = 7.9
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 12/120 (10%)
Query: 234 LEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKE---IQENSNGQEN 290
L PK +Q+ + E +N E + K + + LE++ ++ I + EN
Sbjct: 1786 LSTPKTHSQK---VSLEALDNAHETENKNPLDKAQELLESLSSYDEKGNLIAPSKKELEN 1842
Query: 291 KEKTQESAEIPQDKEIQEVVTEKTQAQ------ELEVPKEKTQESAEALQETQAHELEKQ 344
+ K +E+ + D+EI + + + ++ +P+ + +A E Q +L K+
Sbjct: 1843 ELKEKEAKSVNLDEEIAKGCSFDVYSDVLRHLVQMGIPQNEIAFIHDAKTEEQKQDLFKK 1902
>ref|NP_223642.1| putative [Helicobacter pylori J99]
Length = 195
Score = 42.4 bits (98), Expect = 3e-05
Identities = 36/158 (22%), Positives = 73/158 (45%), Gaps = 10/158 (6%)
Query: 105 EMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPT 164
+M+K K L + E + D E+++ EL +L E L + N + P+
Sbjct: 31 DMMKAFMKDLAFAKDKNEVIKAQD--NELVKEFMQELSSLSFKEQLEFYQTNRDYD--PS 86
Query: 165 LNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEV 224
L++ E E+ + ++ EK+++ ++E +E +++ +E L +K
Sbjct: 87 LDNDENSSELLDAFTSSLENLEKQKINP-----IREQKRESGWQNNEDNKENSEL-EKAF 140
Query: 225 SKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKT 262
K+L Q IP ++ + KEE E+KE++ ++T
Sbjct: 141 KKDLSFSQSNPIPLDKKETSKEEKEEELESKEKEPKET 178
Score = 36.2 bits (82), Expect = 0.002
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 5/129 (3%)
Query: 176 EEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELE 235
+++ E +K ++ E VKE +E + +E+ + +L + E S EL
Sbjct: 44 KDKNEVIKAQDNELVKEFMQELSSLSFKEQLEFYQTNRDYDPSLDNDENSSELLDAFTSS 103
Query: 236 IPKEETQEQDPIKEETQE-----NKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEN 290
+ E Q+ +PI+E+ +E N++ K+ + ++L Q + + +E
Sbjct: 104 LENLEKQKINPIREQKRESGWQNNEDNKENSELEKAFKKDLSFSQSNPIPLDKKETSKEE 163
Query: 291 KEKTQESAE 299
KE+ ES E
Sbjct: 164 KEEELESKE 172
>ref|NP_223625.1| putative [Helicobacter pylori J99]
Length = 362
Score = 40.8 bits (94), Expect = 8e-05
Identities = 42/197 (21%), Positives = 87/197 (43%), Gaps = 27/197 (13%)
Query: 274 MQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEAL 333
+++++K + S ++N EK AE +EIQ+ + +++ + QE L
Sbjct: 170 LKDMIKSYNKGSRWEKN-EKANADAE-KYYEEIQDRIRRLKESKIFDSQSSNDQE----L 223
Query: 334 QETQAHELEKQEIAET-PQDVEIPQSQDKEVQELEIPKEETQENTE-----TPQDVETPQ 387
Q++ L+ I PQ + ++Q ++++ +I + +TQ++ E + Q ++ P
Sbjct: 224 QKSANSNLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPL 283
Query: 388 EKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNEN 447
EKE + Y + ++ + A AK + +PK S ++
Sbjct: 284 EKEKDKPMYLA---------------QINSADFAPAKKSPKKPAKASPKRSSKNNISVKS 328
Query: 448 NTETPQEKEESDKTSSP 464
NT+T + +E K SP
Sbjct: 329 NTKTASKNKEVCKNCSP 345
Score = 34.3 bits (77), Expect = 0.008
Identities = 32/168 (19%), Positives = 77/168 (45%), Gaps = 22/168 (13%)
Query: 244 QDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENS---NGQENKEKTQESAEI 300
+D IK + ++ EK EK ++ + + E +Q+ ++ ++E+ + N ++ Q+SA
Sbjct: 171 KDMIKSYNKGSRWEKNEKA-NADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANS 229
Query: 301 PQDKE---------IQEVVTEKTQAQELEVPKEKTQESAE----ALQETQAHELEKQE-- 345
D + + + T+K+Q ++ ++ + +TQ+S E A ++ LEK++
Sbjct: 230 NLDLDPIGNAMPQTLAQTETQKSQIEKSQIEEAQTQKSQEMKEAASEQAIKKPLEKEKDK 289
Query: 346 ---IAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEKE 390
+A+ P + + PK ++ N + +T + +
Sbjct: 290 PMYLAQINSADFAPAKKSPKKPAKASPKRSSKNNISVKSNTKTASKNK 337
Score = 30.4 bits (67), Expect = 0.11
Identities = 26/131 (19%), Positives = 62/131 (46%), Gaps = 11/131 (8%)
Query: 171 KEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEA 230
K+ +K K + E+ E+ + ++ +E ++ K+ + + ++ D+E+ K +
Sbjct: 171 KDMIKSYNKGS-RWEKNEKANADAEKYYEEIQDRIRRLKESKIFDSQSSNDQELQKSANS 229
Query: 231 PQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEN 290
+L+ P Q + ETQ+++ EK +Q EA + +E++E ++ Q
Sbjct: 230 NLDLD-PIGNAMPQTLAQTETQKSQIEK---------SQIEEAQTQKSQEMKEAASEQAI 279
Query: 291 KEKTQESAEIP 301
K+ ++ + P
Sbjct: 280 KKPLEKEKDKP 290
>ref|NP_223247.1| putative SIDEROPHORE-MEDIATED IRON TRANSPORT PROTEIN [Helicobacter
pylori J99]
Length = 317
Score = 40.8 bits (94), Expect = 8e-05
Identities = 38/150 (25%), Positives = 69/150 (45%), Gaps = 15/150 (10%)
Query: 153 EEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDE 212
E+P E + P + +K K + ++V++ E+++V EE+KEE K Q+ ++ K +E
Sbjct: 111 EKPKPEPK--PKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQKKIEE 168
Query: 213 TQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELE 272
K V KE + Q +PKE P ++E + + + + D +E
Sbjct: 169 --------KKPVKKEFDPNQLSFLPKEVA----PPRQENNKGLDNQTRRDIDELYGEEFG 216
Query: 273 AMQELVKEIQENSNGQENKEKTQESAEIPQ 302
+ K+ N N ++ TQ+ E PQ
Sbjct: 217 DLGTAEKDFIRN-NLRDIGRITQKYLEYPQ 245
Score = 28.1 bits (61), Expect = 0.54
Identities = 20/67 (29%), Positives = 34/67 (49%), Gaps = 5/67 (7%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKK 207
E V EE E++++ +++ E+ K EEK+ VK+E +EV QE K
Sbjct: 143 EKKVVEEKKEEKKVV-----EQKVEQKKIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNK 197
Query: 208 PKDDETQ 214
D++T+
Sbjct: 198 GLDNQTR 204
Score = 27.7 bits (60), Expect = 0.71
Identities = 32/165 (19%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 185 EEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQ 244
E +E+ + + VK P+ K +Q+ L PQ+ P
Sbjct: 45 EHREDFFPSKPKLVKLNPENLLVLKRGHSQDPSKNNPGAPKPTLAGPQKPPTPPTPPTPP 104
Query: 245 DPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDK 304
P K + E K + + + V++++E +E KE+ + + + K
Sbjct: 105 TPPKPIEKPKPEPKPKPKPEPKKPNHKHKALKKVEKVEEKKVVEEKKEEKKVVEQKVEQK 164
Query: 305 EIQE---VVTEKTQAQELEVPKE---KTQESAEALQETQAHELEK 343
+I+E V E Q +PKE QE+ + L ++++
Sbjct: 165 KIEEKKPVKKEFDPNQLSFLPKEVAPPRQENNKGLDNQTRRDIDE 209
>ref|NP_222894.1| putative [Helicobacter pylori J99]
Length = 268
Score = 39.7 bits (91), Expect = 2e-04
Identities = 46/177 (25%), Positives = 76/177 (41%), Gaps = 36/177 (20%)
Query: 179 KEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPK 238
K+E K++E E + ++P++E K DK V + E +P
Sbjct: 68 KDEKKDDEFESLN-------MDSPKQEDK------------LDKVVDNIKKQESENSMPI 108
Query: 239 EETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESA 298
+ Q Q +K EEKQE S +EL+A++ + Q+ S KE +
Sbjct: 109 QTDQAQMEMK-----TTEEKQE------SQKELKAVEPIPMSTQKESQAVAKKETPHKKP 157
Query: 299 EI-PQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQE----TQAHELEKQEIAETP 350
++ P+DKE + K A+E +V KE +E ++ T+ H L+ A TP
Sbjct: 158 KVAPKDKEAHK-DKAKHAAKEPKVKKEARKEVSKKANSKTNLTKGHYLQVGVFAHTP 213
Score = 38.9 bits (89), Expect = 3e-04
Identities = 33/145 (22%), Positives = 69/145 (46%), Gaps = 8/145 (5%)
Query: 322 PKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQ 381
PKE ++ +Q+ + EK++ +++ P+ +DK + ++ K++ EN+ Q
Sbjct: 50 PKETFLQTDSGMQKIGNTKDEKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQ 109
Query: 382 DVETPQEKETQEDHYESIEDIP--EPVMAKAMGEELPFLNEAVAKIPN-NENDTETPKES 438
+ E +T E+ ES +++ EP+ E ++AVAK ++ PK+
Sbjct: 110 TDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKE-----SQAVAKKETPHKKPKVAPKDK 164
Query: 439 VTETSKNENNTETPQEKEESDKTSS 463
K ++ + P+ K+E+ K S
Sbjct: 165 EAHKDKAKHAAKEPKVKKEARKEVS 189
Score = 34.3 bits (77), Expect = 0.008
Identities = 26/124 (20%), Positives = 53/124 (41%), Gaps = 7/124 (5%)
Query: 146 DLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKE-EVKETPQE 204
+ E+L + P E++L + + +K++E E + ++ + E K E K+ Q+
Sbjct: 75 EFESLNMDSPKQEDKL------DKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQK 128
Query: 205 EKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQD 264
E K + + KE + PK++ +D K +E K +K+ + +
Sbjct: 129 ELKAVEPIPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDKAKHAAKEPKVKKEARKEV 188
Query: 265 SPSA 268
S A
Sbjct: 189 SKKA 192
Score = 33.9 bits (76), Expect = 0.010
Identities = 44/152 (28%), Positives = 66/152 (42%), Gaps = 17/152 (11%)
Query: 89 FLEGFEVKIKKPFLPTE--MLKVLQKKLGSNASELEPSQNLD-PTQEVLETNWDELENLG 145
F + V K+ FL T+ M K+ K E E S N+D P QE D+L+ +
Sbjct: 42 FWKSTRVAPKETFLQTDSGMQKIGNTKDEKKDDEFE-SLNMDSPKQE------DKLDKVV 94
Query: 146 DLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKE--EVKEEEKEEVKEEEKEEVKETPQ 203
D + E + Q + + EE +E +KE V+ KE + KETP
Sbjct: 95 DNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVEPIPMSTQKESQAVAKKETPH 154
Query: 204 EEKK--PKDDETQEGETLKDKEVSKELEAPQE 233
++ K PKD E + K K +KE + +E
Sbjct: 155 KKPKVAPKDKEAHKD---KAKHAAKEPKVKKE 183
Score = 28.5 bits (62), Expect = 0.42
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 289 ENKEKTQESAEIP---QDKEIQEVVTE-KTQAQELEVPKEKTQESAEALQETQAHELEKQ 344
E K+ ES + Q+ ++ +VV K Q E +P + Q E + E +K+
Sbjct: 70 EKKDDEFESLNMDSPKQEDKLDKVVDNIKKQESENSMPIQTDQAQMEMKTTEEKQESQKE 129
Query: 345 EIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEK 389
A P IP S KE Q + + ++ P+D E ++K
Sbjct: 130 LKAVEP----IPMSTQKESQAVAKKETPHKKPKVAPKDKEAHKDK 170
Score = 26.6 bits (57), Expect = 1.6
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 13/98 (13%)
Query: 369 PKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNN 428
PKE + Q + ++ E ++D +ES+ + P + + K+ +N
Sbjct: 50 PKETFLQTDSGMQKIGNTKD-EKKDDEFESLN------------MDSPKQEDKLDKVVDN 96
Query: 429 ENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLE 466
E+ +T + + +T +EK+ES K +E
Sbjct: 97 IKKQESENSMPIQTDQAQMEMKTTEEKQESQKELKAVE 134
Score = 25.4 bits (54), Expect = 3.5
Identities = 24/101 (23%), Positives = 46/101 (44%), Gaps = 12/101 (11%)
Query: 289 ENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAE 348
++++K E + D QE +K ++ K++ E++ +Q QA + E+
Sbjct: 68 KDEKKDDEFESLNMDSPKQEDKLDKV----VDNIKKQESENSMPIQTDQA----QMEMKT 119
Query: 349 TPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEK 389
T E Q KE++ +E TQ+ ++ ETP +K
Sbjct: 120 T----EEKQESQKELKAVEPIPMSTQKESQAVAKKETPHKK 156
>ref|NP_223759.1| putative [Helicobacter pylori J99]
Length = 267
Score = 39.3 bits (90), Expect = 2e-04
Identities = 40/191 (20%), Positives = 75/191 (38%), Gaps = 13/191 (6%)
Query: 213 TQEGETLKDKEVSKEL---EAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQ 269
T GE+LK K E E + ++E E +++ +K E + +
Sbjct: 82 TNAGESLKLKMKEYERFFSEFNTSMHANEQEVTNTLNANAENIKSEIKKLENQLIETTTR 141
Query: 270 ELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQES 329
L + Q + + ++N+N Q K KTQ I Q K Q Q + E +
Sbjct: 142 LLTSYQIFLNQARDNANNQITKNKTQSLEAITQAKNNANNEISNNQTQAITNITEAKTNA 201
Query: 330 AEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEK 389
+ Q + A+ +I ++ + + + TQE T+ ++ + K
Sbjct: 202 NNEISNNQTQAITNINEAKESATTQINANKQEAINNI------TQEKTQATSEI--TEAK 253
Query: 390 ETQEDHYESIE 400
+T DHY++I+
Sbjct: 254 KT--DHYQNID 262
>ref|NP_223322.1| putative [Helicobacter pylori J99]
Length = 413
Score = 38.9 bits (89), Expect = 3e-04
Identities = 72/321 (22%), Positives = 129/321 (39%), Gaps = 47/321 (14%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKE-----------EVKEEEKE 196
+ L +E N+E L ++EEK+E K + K + + ++K K
Sbjct: 44 QELKSKELKNKELKNKDLKNKEEKKETKAKRKPRAEVHHGDAKNPTPKITPPKIKGSSKG 103
Query: 197 EVKETPQEE-KKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQE--QDPI------ 247
+ Q KP++ +T T K+KE S + P T +D +
Sbjct: 104 VQNQGVQNNAPKPEEKDTTPQATEKNKETSPSSQFNSIFGNPNNATNNTLEDKVVGGISL 163
Query: 248 ----KEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQD 303
T +E+QEK++ S + + E +K N+E + + D
Sbjct: 164 LVNGSPITLYQIQEEQEKSKVSKAQARDRLIAERIK----------NQEIERLKIHVDDD 213
Query: 304 KEIQEVVTEKTQAQELEVPKEKTQESAEA---LQETQAHE-LEKQEIAETPQDVEIPQSQ 359
K QE+ Q Q +++ K AE L Q E LE QE+ + S
Sbjct: 214 KLDQEMAM-MAQQQGMDLDHFKQMLMAEGHYKLYRDQLKEHLEMQELLRNILLTNVDTSS 272
Query: 360 DKEVQELEIPKEETQENTETPQDVETPQEKET-QEDHYESIED--IPEPVMAKAMGE-EL 415
+ +++E + +E P ++ET + T QED ++ D + P ++KA + E+
Sbjct: 273 ETKMREY---YNKHKEQFSIPTEIETVRYTSTNQEDLERAMADPNLEVPGVSKANEKIEM 329
Query: 416 PFLNEAVAKI-PNNENDTETP 435
LN +A++ ++E + TP
Sbjct: 330 KTLNPQIAQVFISHEQGSFTP 350
Score = 33.9 bits (76), Expect = 0.010
Identities = 76/350 (21%), Positives = 135/350 (37%), Gaps = 66/350 (18%)
Query: 175 KEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQEL 234
K E E K+E + K ++ + KE +E K KD LK+KE KE +A ++
Sbjct: 25 KVEALEGRKQESSLDKKIRQELKSKELKNKELKNKD--------LKNKEEKKETKAKRK- 75
Query: 235 EIPKEETQEQDP------------------IKEETQENKEEKQEKTQDSPSAQELEAMQE 276
P+ E D ++ + +N K E+ +P A E +E
Sbjct: 76 --PRAEVHHGDAKNPTPKITPPKIKGSSKGVQNQGVQNNAPKPEEKDTTPQATEKN--KE 131
Query: 277 LVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVT-EKTQAQELEVPKEKTQES-AEALQ 334
Q NS T + E I +V +++ +EK++ S A+A
Sbjct: 132 TSPSSQFNSIFGNPNNATNNTLEDKVVGGISLLVNGSPITLYQIQEEQEKSKVSKAQARD 191
Query: 335 ETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQED 394
A ++ QEI + ++I DK QE+ + + + D++ ++ E
Sbjct: 192 RLIAERIKNQEI----ERLKIHVDDDKLDQEMAMMAQ------QQGMDLDHFKQMLMAEG 241
Query: 395 HYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQE 454
HY+ D + E L + E + I DT + + +K++ P E
Sbjct: 242 HYKLYRD--------QLKEHLE-MQELLRNILLTNVDTSSETKMREYYNKHKEQFSIPTE 292
Query: 455 KEESDKTSSPLELRLNLQDLLKSLNQESLK--------SLLENKTLSIKI 496
E TS+ N +DL +++ +L+ +E KTL+ +I
Sbjct: 293 IETVRYTST------NQEDLERAMADPNLEVPGVSKANEKIEMKTLNPQI 336
>ref|NP_223373.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Helicobacter pylori J99]
Length = 582
Score = 38.5 bits (88), Expect = 4e-04
Identities = 71/302 (23%), Positives = 122/302 (39%), Gaps = 52/302 (17%)
Query: 179 KEEVKEEEKEEVKEEEKEEVKETP--QEEKKPKDDETQEGETLKDKEVSKELEAPQELEI 236
K + KE K + ++ E+++TP Q + QE ++ + E ++LE + +E
Sbjct: 328 KMKFKEALKLKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIEGREKLEKRERIET 387
Query: 237 PKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQE 296
P+ K+ N KQ +T EL A+ E K I+ + K T E
Sbjct: 388 PQTPMLSA---KDRIFHNLF-KQVQTLVYERNYELGAVFE--KNIRFIDFDSQTKTLTWE 441
Query: 297 SAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIP 356
S +DKE+ + E+ + + V + E ++ H LE + E
Sbjct: 442 SLATDKDKEL---LRERFKIVKSIV--DGVFGKGENIKIALKHHLENKSAPE-------- 488
Query: 357 QSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELP 416
+ KEV+E + P + + TET ++ QEKET+E A+G+ L
Sbjct: 489 --ETKEVKEFKFPPLKPKLTTETTAEM---QEKETKE----------------AVGKAL- 526
Query: 417 FLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLK 476
ENDT+ +E+ T+ +K E P +E S L + + +K
Sbjct: 527 ---------QTKENDTKEVQENETKETKEAQPKEAPTALQEFMANHSNLIEEIKSEFEIK 577
Query: 477 SL 478
S+
Sbjct: 578 SV 579
Score = 38.1 bits (87), Expect = 5e-04
Identities = 71/334 (21%), Positives = 135/334 (40%), Gaps = 34/334 (10%)
Query: 85 EAQPFLEGFEVKIKKPFLPTEMLKVLQ-----KKLGSNASELEPSQNLDPTQEVLETNWD 139
E + LE + +K L + +L K + S+ S L+ N +L+ +
Sbjct: 273 ETEGVLEEMMLFLKAKLLSPDSYSILLIERFFKIIMSSLSLLKEGANASFVLLLLKMKFK 332
Query: 140 ELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVK 199
E L L+ + E P+++ K+E K E+ E +E++++ E+ E
Sbjct: 333 EALKLKALDDAIVELEQTPFNQSPSISYNAPKQEPKSTERIE----GREKLEKRERIETP 388
Query: 200 ETPQEEKKPK--DDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEE 257
+TP K + + ++ +TL E + EL A E I + Q K T E+
Sbjct: 389 QTPMLSAKDRIFHNLFKQVQTLV-YERNYELGAVFEKNIRFIDFDSQ--TKTLTWESLAT 445
Query: 258 KQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQ 317
++K E ++E K ++ +G K + + A + E + E + +
Sbjct: 446 DKDK----------ELLRERFKIVKSIVDGVFGKGENIKIA-LKHHLENKSAPEETKEVK 494
Query: 318 ELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENT 377
E + P K + + E E Q EK+ + ++ ++ KEVQE E + + +
Sbjct: 495 EFKFPPLKPKLTTETTAEMQ----EKETKEAVGKALQTKENDTKEVQENETKETKEAQPK 550
Query: 378 ETPQDVETPQEKETQEDHYESIEDIPEPVMAKAM 411
E P ++ E +H IE+I K++
Sbjct: 551 EAPTALQ-----EFMANHSNLIEEIKSEFEIKSV 579
Score = 35.0 bits (79), Expect = 0.004
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 192 EEEKEEVKETPQEEKKPKDDETQEGETLKD--KEVSKELEAPQELEIPKEETQEQDPIKE 249
+++KE ++E + K D +GE +K K + AP+E + KE + P+K
Sbjct: 446 DKDKELLRERFKIVKSIVDGVFGKGENIKIALKHHLENKSAPEETKEVKEF--KFPPLKP 503
Query: 250 E-TQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQE 308
+ T E E QEK + L+ + KE+QEN E KE T+E+ +QE
Sbjct: 504 KLTTETTAEMQEKETKEAVGKALQTKENDTKEVQEN----ETKE-TKEAQPKEAPTALQE 558
Query: 309 VVTEKTQAQELEVPKEKTQESAEAL 333
+ + E E+ E +S E L
Sbjct: 559 FMANHSNLIE-EIKSEFEIKSVELL 582
>ref|NP_224062.1| putative [Helicobacter pylori J99]
Length = 258
Score = 37.7 bits (86), Expect = 7e-04
Identities = 27/82 (32%), Positives = 43/82 (51%), Gaps = 6/82 (7%)
Query: 171 KEEVKEEEKEEVKE-----EEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKD-KEV 224
KE VKE ++E VKE EEK+ + + +E TP+ KK +E+ G+ L + K+
Sbjct: 57 KESVKEVKEESVKEIHQNAEEKQSLGIKTPQEEIITPKPPKKTPKEESHNGDKLHEIKQE 116
Query: 225 SKELEAPQELEIPKEETQEQDP 246
K+L + +I K E +P
Sbjct: 117 LKDLFSHLPYKINKVEVSLYEP 138
>ref|NP_222774.1| putative [Helicobacter pylori J99]
Length = 327
Score = 37.7 bits (86), Expect = 7e-04
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 36/299 (12%)
Query: 223 EVSKELEAP-QELEIPKEET-QEQDPIKEETQENKE------EKQEK---TQDSPSAQEL 271
++ +ELEA ELE E +E++ + ET E K+ +K +K T+D + +
Sbjct: 13 QIREELEARISELEDENTELLREREYLAAETSELKDANDQLRQKNDKLFITKDKLTKENT 72
Query: 272 EAMQE---LVKEIQ--ENSNGQ---ENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPK 323
E E L +I E+SN Q N + T+E AE+ +K+I K + L
Sbjct: 73 ELFAENESLSVKISGLEHSNDQLWQNNNKLTKEKAELKTEKDI----LAKENTRLLAARD 128
Query: 324 EKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDV 383
T+E E E + + E E+ ++ +++ + E K Q T +
Sbjct: 129 RLTEEKRELTTEKERLKRENTELTHKITEL----TKENKALTTENDKLNHQVTALTNERD 184
Query: 384 ETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETS 443
QE+ +D + +E + +E L + + ++ + + E + +
Sbjct: 185 SLEQERARLQDAHGFLEK-----RCTNLEKENQRLTDKLKQLESAQKSLENTNNQLRQAL 239
Query: 444 KNENNTETPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENKTLSIKITLEDKK 502
+N +N + Q KE+ S LE + LKSL KS L+ + ED K
Sbjct: 240 EN-SNVQLAQAKEKIAIEKSELEREI---ARLKSLEGMEAKSDLDLHNRRLASANEDLK 294
>ref|NP_223213.1| cag island protein, CYTOTOXICITY ASSOCIATED IMMUNODOMINANT ANTIGEN
[Helicobacter pylori J99]
Length = 1167
Score = 37.4 bits (85), Expect = 9e-04
Identities = 61/272 (22%), Positives = 108/272 (39%), Gaps = 42/272 (15%)
Query: 118 ASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEE 177
A L P + ++ L +N + + + V E N T N E K+ K+
Sbjct: 566 AKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKN-------TGNYDEVKQAQKDL 618
Query: 178 EKEEVKEE--EKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEA---PQ 232
EK K E EK+ K E + + E K + + E L +KE +++ A Q
Sbjct: 619 EKSLKKRERLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQ 678
Query: 233 ELEIPKEETQEQ-----DPIKEETQENKEEKQEKTQDSPSAQE-LEAMQELVKEI----- 281
L+ K E ++ +K+ ++ E K K +D A+E L+A++ VK++
Sbjct: 679 NLKGIKRELSDKLENINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPE 738
Query: 282 ----QENSNGQENKEK----------TQESAEIP---QDKEIQEVVTEKTQAQELEVPKE 324
EN N N+ K TQ +++ +D I + +T+K V
Sbjct: 739 WISKVENLNAALNEFKNGKNKDFSKVTQAKSDLENSIKDVIINQKITDKVDNLNQAVSVA 798
Query: 325 KTQESAEALQETQA--HELEKQEIAETPQDVE 354
K +++ A K+++A+ Q E
Sbjct: 799 KATGDFSGVEQALADLKNFSKEQLAQQAQKNE 830
>ref|NP_222877.1| putative [Helicobacter pylori J99]
Length = 243
Score = 36.2 bits (82), Expect = 0.002
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 22/196 (11%)
Query: 130 TQEVLET--NWDELENLGDLEALVQ-EEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEE 186
TQE L+ + +LENL LEA + +EP EE +E KE EK VK+E+
Sbjct: 2 TQEELDALMSGGDLENLEALEAKEEAKEPTKEEP-------KESKENSNYSEKMTVKKED 54
Query: 187 KEEV-KEEEKEEVKETPQEEKK---PKDDETQEGETLKDKEVSKELE--APQELEIPKEE 240
E+ K E P EE K DD T++ E +K ++ +L+ +I K
Sbjct: 55 AEKYGKISPHEWPPPPPTEEHKVVHQLDDVTRDSE-VKATQIFDQLDLIGASAEKIAKMV 113
Query: 241 TQEQDPIK--EETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQEN-KEKTQES 297
+ Q+P++ +E +N + +A L QE++ ++ N + + ++
Sbjct: 114 KKIQEPLQKHQEIFDNLHAHFPHVESFKTA--LNEQQEILNALKSIEEEAANCSDSSMQA 171
Query: 298 AEIPQDKEIQEVVTEK 313
+I Q ++I E+
Sbjct: 172 MDIMQFQDIHRQKIER 187
Score = 33.5 bits (75), Expect = 0.013
Identities = 41/186 (22%), Positives = 75/186 (40%), Gaps = 26/186 (13%)
Query: 173 EVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQ 232
+++ E E KEE KE KEE KE + + EK T+K ++ K +
Sbjct: 14 DLENLEALEAKEEAKEPTKEEPKESKENSNYSEKM----------TVKKEDAEKYGKISP 63
Query: 233 ELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKE 292
P T+E + + ++ + + TQ + A E + ++ + QE +
Sbjct: 64 HEWPPPPPTEEHKVVHQLDDVTRDSEVKATQIFDQLDLIGASAEKIAKMVKKI--QEPLQ 121
Query: 293 KTQE-----SAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESA-------EALQETQAHE 340
K QE A P + + + E Q + L K +E+A +A+ Q +
Sbjct: 122 KHQEIFDNLHAHFPHVESFKTALNE--QQEILNALKSIEEEAANCSDSSMQAMDIMQFQD 179
Query: 341 LEKQEI 346
+ +Q+I
Sbjct: 180 IHRQKI 185
Score = 25.0 bits (53), Expect = 4.6
Identities = 18/59 (30%), Positives = 26/59 (43%)
Query: 404 EPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTS 462
E + A G +L L AK E E PKES ++ +E T ++ E+ K S
Sbjct: 4 EELDALMSGGDLENLEALEAKEEAKEPTKEEPKESKENSNYSEKMTVKKEDAEKYGKIS 62
>ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99]
Length = 681
Score = 36.2 bits (82), Expect = 0.002
Identities = 68/308 (22%), Positives = 127/308 (41%), Gaps = 52/308 (16%)
Query: 48 LIADDECLEKLDQVDWLELKETISQNKNSVCMYKKGNEAQPFLEGFEVKIKKPFL----- 102
L++ E +KL+ +D ++K T + K V + +G++ +K FL
Sbjct: 118 LVSSSEYAKKLNAID--KIKNT--EEKQKVL-------DEELEDGYDFLKEKDFLEWSRS 166
Query: 103 --PTEML--KVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNE 158
P M ++ KL S E+E S+ + ++++ + L D ++ N
Sbjct: 167 DSPVRMYLREMGDIKLLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINR 226
Query: 159 EQLLPTLN---DQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQE 215
E+ + L D +++ V + +K++ EE+ EE EE K+ E+ K + ++ QE
Sbjct: 227 ERRVKELFRSFDDDDENSVSDPKKDDDSEED------EENEERKKVVSEKDKKRVEKVQE 280
Query: 216 GETLKDK---EVSKELEAPQELEIPKEETQEQDPIKEETQENKEEK-QEKTQDSPSAQEL 271
DK E K LEAP + +E + ++ T K + +++ D +L
Sbjct: 281 SFKALDKAKKEWLKALEAP-------IDEKEDELVRSLTLAYKRQTLKDRLYDLEPTSKL 333
Query: 272 EAMQELVKEIQENSNGQENKEKTQESAE----------IPQDKEIQEVVTEKTQAQELEV 321
+ ELVK ++ + EK + E I K+I +T T+ +
Sbjct: 334 --INELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKKILANITNMTKEDIIAQ 391
Query: 322 PKEKTQES 329
E T S
Sbjct: 392 VPEATMVS 399
Score = 33.1 bits (74), Expect = 0.017
Identities = 36/151 (23%), Positives = 73/151 (47%), Gaps = 8/151 (5%)
Query: 170 EKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEK--KPKDDETQEGET--LKDKEVS 225
+K+ +E+ + K+E K E +E K KE+ +E K K K+ + +E +T K KE +
Sbjct: 2 KKKANEEKAPKRAKQEAKTEATQENK--AKESNKENKNNKAKEGKIKEAKTKESKVKETA 59
Query: 226 KELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN- 284
KE ++L E +E + E + + P+ +++ ++EL ++ Q+
Sbjct: 60 KEPIPVKKLSF-NEALEELFANSLSDCVSYESIIQISAKVPTLAQIKKIKELCQKYQKKL 118
Query: 285 SNGQENKEKTQESAEIPQDKEIQEVVTEKTQ 315
+ E +K +I +E Q+V+ E+ +
Sbjct: 119 VSSSEYAKKLNAIDKIKNTEEKQKVLDEELE 149
Score = 30.4 bits (67), Expect = 0.11
Identities = 32/154 (20%), Positives = 65/154 (41%), Gaps = 14/154 (9%)
Query: 257 EKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKE-------IQEV 309
+K+ + +P + EA E QEN + NKE A+ + KE ++E
Sbjct: 2 KKKANEEKAPKRAKQEAKTEAT---QENKAKESNKENKNNKAKEGKIKEAKTKESKVKET 58
Query: 310 VTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQD--KEVQELE 367
E ++L + + A +L + ++E Q A+ P +I + ++ ++ Q+
Sbjct: 59 AKEPIPVKKLSFNEALEELFANSLSDCVSYESIIQISAKVPTLAQIKKIKELCQKYQKKL 118
Query: 368 IPKEETQENTETPQDVETPQEKETQEDHYESIED 401
+ E + ++ +EK+ D E +ED
Sbjct: 119 VSSSEYAKKLNAIDKIKNTEEKQKVLD--EELED 150
>ref|NP_223761.1| putative [Helicobacter pylori J99]
Length = 1154
Score = 35.4 bits (80), Expect = 0.003
Identities = 86/445 (19%), Positives = 162/445 (36%), Gaps = 66/445 (14%)
Query: 15 LLESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQVDWLEL-KETISQN 73
L+ SK LEL +N ++E + A +E EK +L E I +
Sbjct: 29 LISDFSKNLELSAKNSKFTNNTLKIIEELNNGVKQASEEIKEKAFDFSNEKLTNEQIKEL 88
Query: 74 KNSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNL------ 127
N+ + G +A F FL K++ +K + EL N
Sbjct: 89 LNNAKIPTSGRDAITFGTNNLNPEMVEFLHKNNKKMIIEKASNKELELLKDANFKHPENI 148
Query: 128 ------DPTQEVLETNWDELENLGDLEALVQEEP--------NNEEQLLPTLNDQEEKEE 173
D +L+ + N+ + E+ + E NN + +L TL D E+KE
Sbjct: 149 RASLDHDAIAHILKRHGVNSVNVKNGESPITYEDIANYRYIVNNADAILRTL-DNEDKEV 207
Query: 174 VKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQE 233
+ ++ E+ ++ E V +T + D K+ S L +
Sbjct: 208 ISAFKQINGYAVVVEQAINKKNELVLKTMYKSNGDYKDNNAY------KKFSSTLTLNAD 261
Query: 234 LEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEK 293
++ + + TQ+ L + ++L+K+ EN N K
Sbjct: 262 AKVNHGLSSHSGATENLTQK----------------PLTSQEDLLKDT-ENLNETTPKPT 304
Query: 294 TQESAEIPQDKEIQEVVTEKTQA-QELEVPKEKTQESAEALQETQAHELEKQEIAETPQD 352
E+ +++ ++ +E+ Q+ QE KE+ + EAL++ HE E+
Sbjct: 305 HLSPLELANAEKLAKLESEQLQSEQEFLKAKEQELKRKEALKKKLEHERGNAGHIESQTK 364
Query: 353 VEIPQSQDKEVQELEIPKEETQENTETPQDVE-----------------TPQEKETQEDH 395
+E+ + +VQ +IPK + N D++ T + + E+
Sbjct: 365 IEVGEDIPTQVQ-AQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQ 423
Query: 396 YESIED--IPEPVMAKAMGEELPFL 418
+SI + P+ + E+LP +
Sbjct: 424 IKSIAENFDPKKIFGSGGFEDLPII 448
>ref|NP_223427.1| putative PROBABLE N-ACETYLMURAMOYL-L-ALANINE AMIDASE [Helicobacter
pylori J99]
Length = 469
Score = 35.4 bits (80), Expect = 0.003
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 12/121 (9%)
Query: 149 ALVQEEPNNEEQLLP------TLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETP 202
++++++P Q+ P L Q K K +KE K +EK K +P
Sbjct: 113 SIMEKKPLIRHQMTPKPPKHHALKHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHA--HSP 170
Query: 203 QEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKT 262
E+ K + ++ + KE+ K+ E P++ EIPK+E +++ K+E + + E + K
Sbjct: 171 LNERSAKKEIPKK--EIPKKEIPKK-EIPKK-EIPKKEIPKKEIPKKEIPKKEAENESKN 226
Query: 263 Q 263
Q
Sbjct: 227 Q 227
Score = 26.2 bits (56), Expect = 2.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 322 PKEKTQESAEALQETQAHELEKQE---IAETPQDVEIPQSQDKEVQELEIPKEE 372
PK +E+ +A ++T H K + E EIP+ KE+ + EIPK+E
Sbjct: 144 PKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPK---KEIPKKEIPKKE 194
Score = 26.2 bits (56), Expect = 2.1
Identities = 22/101 (21%), Positives = 45/101 (43%), Gaps = 22/101 (21%)
Query: 278 VKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQ 337
+K+ + + + K + A P ++ + K + + E+PK+
Sbjct: 147 IKKEAKKAKEKTTKHAHSKHAHSPLNERSAKKEIPKKEIPKKEIPKK------------- 193
Query: 338 AHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTE 378
E+ K+EI + EIP+ KE+ + EIPK+E + ++
Sbjct: 194 --EIPKKEIPKK----EIPK---KEIPKKEIPKKEAENESK 225
Score = 24.3 bits (51), Expect = 7.9
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 258 KQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQ 317
K + + +P + EA + K + + + + SA+ KEI + K +
Sbjct: 136 KHQTPKPTPKPIKKEAKKAKEKTTKHAHSKHAHSPLNERSAK----KEIPKKEIPKKEIP 191
Query: 318 ELEVPKEKTQESAEALQETQAHELEKQEIA-ETPQDVEIPQSQD 360
+ E+PK++ + +E E+ K+E E+ + I + D
Sbjct: 192 KKEIPKKEIPKKEIPKKEIPKKEIPKKEAENESKNQIFIAEKND 235
>ref|NP_223183.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 443
Score = 35.4 bits (80), Expect = 0.003
Identities = 43/204 (21%), Positives = 91/204 (44%), Gaps = 9/204 (4%)
Query: 129 PTQEVLETNWDELENLG-DLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEK 187
P +V + + E+ +G D+E++V++ NN L+ + + K++++E E++ ++
Sbjct: 79 PFVKVEASKYTEVGFVGRDVESMVRDLVNNSVLLVENEHKERLKDKIEEAVVEKIAKKLL 138
Query: 188 EEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPI 247
+ EE K+ +GE L +E+ E+ + +EI E +
Sbjct: 139 PPLPSGVSEEKKQEYANSLLKMQQRIAQGE-LDSREIEIEVR-KKSIEIDSNVPPEILRV 196
Query: 248 KEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN-SNGQENKE---KTQESAEIPQD 303
+E + ++Q+K + + S + EA + L EI + +G+ K K ES+ +
Sbjct: 197 QENLIKVFHKEQDKVKKTLSVK--EAKEALKAEISDTLLDGEAIKMEGLKRAESSGVIFI 254
Query: 304 KEIQEVVTEKTQAQELEVPKEKTQ 327
EI ++ + + KE Q
Sbjct: 255 DEIDKIAVSSKEGSRQDPSKEGVQ 278
Score = 31.6 bits (70), Expect = 0.049
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 167 DQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSK 226
D E+ ++ +K KE+ K ++ VKE + K D +GE +K + + +
Sbjct: 186 DSNVPPEILRVQENLIKVFHKEQDKVKKTLSVKEAKEALKAEISDTLLDGEAIKMEGLKR 245
Query: 227 E-------LEAPQELEIPKEETQEQDPIKEETQEN 254
++ ++ + +E QDP KE Q +
Sbjct: 246 AESSGVIFIDEIDKIAVSSKEGSRQDPSKEGVQRD 280
>ref|NP_222962.1| putative [Helicobacter pylori J99]
Length = 222
Score = 35.0 bits (79), Expect = 0.004
Identities = 45/192 (23%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 122 EPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQ--EEKEEVKEEEK 179
E +Q L + E+ EL+ DL L ++E + ++L T N + +EK ++ +++
Sbjct: 18 EAAQELLQCSAIFESKKAELKE--DLRQLSEKEQSL--RILQTENARLLDEKSDLLNKKE 73
Query: 180 EEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEG-----ETLKDKEV----SKELEA 230
+E+ E+ K +EE + +T ++++ E EG + KD ++ SK ++
Sbjct: 74 KEIDEKLKNLAAKEEAFKTLQTEEKKRLKNLIEENEGILREIKQAKDSKIGETYSKMKDS 133
Query: 231 PQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQEL-EAMQELVKEIQENSNGQE 289
L + TQ I + + K D A L E Q+ KE +EN Q+
Sbjct: 134 KSALILENLPTQNALEILMALKPQELGKILAKMDPKKAAALTELWQKPPKENKENKESQK 193
Query: 290 NKEKTQESAEIP 301
+ T + P
Sbjct: 194 TTDPTPPTPPTP 205
>ref|NP_223659.1| putative [Helicobacter pylori J99]
Length = 677
Score = 34.7 bits (78), Expect = 0.006
Identities = 63/340 (18%), Positives = 137/340 (39%), Gaps = 26/340 (7%)
Query: 130 TQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKE-EEKE 188
++E L N +L+ L +++ +Q+ E+ L + Q+E + K +KE ++E ++K
Sbjct: 220 SEEYLYVNEPKLKELDNIKLQLQDLEKEEKALEQIKSPQDEWDLNKALQKEYLQELKDKN 279
Query: 189 EVKEEEKEEVKETPQEEK---------KPKDDETQEGETLKDKEVSKELEAPQELE-IPK 238
+ K + + TP ++K KD E E+L + K + L+ + K
Sbjct: 280 KAKALDIQNNHSTPLKQKISKFKIALFNHKDTSDDEKESLSIDRIDKRKPVSEHLKNMSK 339
Query: 239 EETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESA 298
E E +++ +K Q+ + + + L ++ + + G +K +
Sbjct: 340 HELY-------ELLGFYQKELDKKQNHSAFKNFAILNGLDRDFERETKGYSVLKK--KEM 390
Query: 299 EIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQS 358
+ + K + + + +K L + + + T + + + E +D
Sbjct: 391 LLNKLKHLDKRLLDKNSHLLLAQLRNEVKTKQNTQYNTLTNPILLAKALELSKDKRPTLK 450
Query: 359 QDKEVQELEIPKEETQENTETPQDVETPQ-EKETQEDHYESIEDIPEPVMAKAMGEELPF 417
K + E+ +T Q+ T + T E + ++D ++ A E L F
Sbjct: 451 TFKNAYFSARKYQFMLESFKTKQNDPTYKLNDNTYELVSKQLQDYQNTMLLLAK-ERLLF 509
Query: 418 LNEAVAKIPNNENDTETPKESVTETSKNENNTE-TPQEKE 456
L + + E + E KE ++SK+ T +P+EK+
Sbjct: 510 LEQ---DLKQKEEEFERAKEHYVKSSKHYRETSLSPKEKQ 546
Score = 31.6 bits (70), Expect = 0.049
Identities = 40/168 (23%), Positives = 68/168 (39%), Gaps = 12/168 (7%)
Query: 177 EEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEI 236
E+ + KEEE E KE + K + PK+ + + + ++SK++ L
Sbjct: 511 EQDLKQKEEEFERAKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKDI-----LYT 565
Query: 237 PKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQE 296
E + N E+ E +D+ Q + +Q + KE + E +K Q
Sbjct: 566 CNEIIGANRFLTHYDNLNLEKVLEHAKDTKLEQ--KEIQAITKEPNNDEPWIEFGKKEQA 623
Query: 297 SAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQ 344
A K + + EK +A+EL + T S E + +AH KQ
Sbjct: 624 RA-----KAHYQAMLEKEKAKELAKQQANTLHSNELDDDPKAHAGLKQ 666
Score = 24.6 bits (52), Expect = 6.0
Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 20/161 (12%)
Query: 102 LPTEMLKVLQKKLGSNASELEPSQN--LDPTQEVLETNWDELENLGDLEALVQEEPNNEE 159
L E L L++ L E E ++ + ++ ET+ E G L+ + Q +++
Sbjct: 502 LAKERLLFLEQDLKQKEEEFERAKEHYVKSSKHYRETSLSPKEKQGFLKQIKQFSKISKD 561
Query: 160 QLLPTLN------------DQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEE-- 205
+L T N D E+V E K+ + E++E++ KE + P E
Sbjct: 562 -ILYTCNEIIGANRFLTHYDNLNLEKVLEHAKDT--KLEQKEIQAITKEPNNDEPWIEFG 618
Query: 206 KKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDP 246
KK + + + +KE +KEL A Q+ + DP
Sbjct: 619 KKEQARAKAHYQAMLEKEKAKEL-AKQQANTLHSNELDDDP 658
>ref|NP_223905.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 849
Score = 34.3 bits (77), Expect = 0.008
Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 141 LENLGDLEALVQEEPNNEE----QLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKE 196
L NL + E EE LL LN + + E+ K+ + +E + EEE++
Sbjct: 406 LANLCRSSFCITHEVGAEEILLGMLLKMLNIESTALKSLEDSKQSIVDEAALKALEEERK 465
Query: 197 EVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKE 256
+ E Q E+ E +E E + KE +KE E E PKE E K E +E K
Sbjct: 466 KALE--QAEQGCSIGENKE-EAVASKE-NKE-ENKTEAAAPKENQTEN---KTEVKEEKI 517
Query: 257 EKQEKTQD---SPSAQELEAMQELVKEIQENSN 286
E KT + LE ++++ +Q+++N
Sbjct: 518 EVPTKTTYLLLEEAGINLETYEKILALLQKSNN 550
Score = 28.5 bits (62), Expect = 0.42
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 134 LETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEV--KEEEKEEVKEE--EKEE 189
LE + + + L+AL +E EQ + E KEE +E KEE K E +E
Sbjct: 444 LEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENKTEAAAPKE 503
Query: 190 VKEEEKEEVKE 200
+ E K EVKE
Sbjct: 504 NQTENKTEVKE 514
Score = 25.8 bits (55), Expect = 2.7
Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 247 IKEETQENKEEKQEKTQDSPSAQELEA-MQELVKEIQENSNGQENKEKTQESAEIPQDKE 305
I+ ++ E+ ++ D + + LE ++ +++ ++ + ENKE+ S E ++ +
Sbjct: 436 IESTALKSLEDSKQSIVDEAALKALEEERKKALEQAEQGCSIGENKEEAVASKENKEENK 495
Query: 306 IQEVVTEKTQAQ-ELEVPKEKTQ 327
+ ++ Q + + EV +EK +
Sbjct: 496 TEAAAPKENQTENKTEVKEEKIE 518
>ref|NP_224127.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 1252
Score = 33.9 bits (76), Expect = 0.010
Identities = 21/102 (20%), Positives = 47/102 (45%)
Query: 244 QDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQD 303
Q+P KE + ++E ++ P + E + + + +N+ G + + + I D
Sbjct: 18 QEPKKETIENFEKEINSLLENVPRQDDEEFQKNEINKFLKNAYGYDCNTYEKVDSVIYVD 77
Query: 304 KEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQE 345
KE++ ++ K + E PK + ++A + + LE+ E
Sbjct: 78 KEVRVLIEVKALNNKTEFPKNRENPLSKAFCQMVLYFLEEIE 119
>ref|NP_222874.1| putative [Helicobacter pylori J99]
Length = 157
Score = 33.9 bits (76), Expect = 0.010
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 12/115 (10%)
Query: 151 VQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEE-VKETPQEEKKPK 209
+Q PN++ P E K K E +E++ EEKEE KE EE V+E P + P
Sbjct: 45 LQNTPNSKNANTPL----EPKNAAKIETQEKI-TEEKEEAKEIITEEIVQENPTQALIPN 99
Query: 210 DDETQEG---ETL---KDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEK 258
+ +G TL K + +E EA + L++ Q Q + E+ E+ E +
Sbjct: 100 ERVFLKGLLERTLVLFKGMQALEEKEALKRLDLVARFLQYQLSVLEKRLESLERE 154
>ref|NP_223574.1| putative vacuolating cytotoxin (VacA) paralog [Helicobacter pylori
J99]
Length = 2399
Score = 33.5 bits (75), Expect = 0.013
Identities = 26/124 (20%), Positives = 48/124 (37%), Gaps = 1/124 (0%)
Query: 116 SNASELEPSQNLDPTQEVLETNWDELE-NLGDLEALVQEEPNNEEQLLPTLNDQEEKEEV 174
SN + L+ +Q L+ T + ++ + LE +L ++ L EQ QE+++E
Sbjct: 481 SNPTILKDAQGLENTNQQIQQDEKALEKDLAQIKQLANSTTGFNEQAFTQAQKQEQQDEQ 540
Query: 175 KEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQEL 234
+ E E+E +++ P P T T + S+ P
Sbjct: 541 ALQNDENAFNTEQEGLEQAIANAKHANPTPNPTPSPTPTPIKHTAPNTPPSQVPPTPPSQ 600
Query: 235 EIPK 238
+PK
Sbjct: 601 NLPK 604
>ref|NP_223189.1| cag island protein [Helicobacter pylori J99]
Length = 481
Score = 33.5 bits (75), Expect = 0.013
Identities = 49/223 (21%), Positives = 93/223 (40%), Gaps = 33/223 (14%)
Query: 153 EEPNNEEQLLPT-----LNDQEEKEEVKEE---EKEEVKEEEKEEVKEEEKEEVKETPQE 204
+E NN + P+ + KE++ EE + + EE+ E K ++E +ET
Sbjct: 259 KETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQETELA 318
Query: 205 EKKPKDDETQEGETLKDKEVSKE-LEAPQELEIP-KEETQEQDP----IKEETQEN---- 254
+ K KD E Q+ + E+ K+ + P+ +E+P +T + D IKE+ N
Sbjct: 319 KYKLKDLENQKKLKALEAELKKKNTKKPRVVEVPIPPKTSDSDETMRVIKEKENYNGLLV 378
Query: 255 -KE-------------EKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEI 300
KE E + + ++L +++E +K SNG +I
Sbjct: 379 DKETTIKRSYKGTLISENSYSKKTPINLEDLRSLEEEIKSYYVKSNGLCYANGINLYVKI 438
Query: 301 PQDKEIQEVVTEKTQAQELEVP-KEKTQESAEALQETQAHELE 342
D + ++ Q+L P ++K + + LQ+ +L+
Sbjct: 439 KNDPYKEGMLCGYESVQKLLSPLRDKLKYDKQKLQKALLKDLK 481
>ref|NP_224128.1| TYPE III RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 969
Score = 32.7 bits (73), Expect = 0.022
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 17 ESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQ-VDWLELKETISQNKN 75
E ++K+++ ENF ++ L A L D E L +D+ V + +S
Sbjct: 652 ERKTEKIKINKENFKKFETLWAGLNHQARIAYAIDSESL--IDEIVKNINSSFNVSSKIV 709
Query: 76 SVCMYKK----GNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQ 131
SV +KK GN A+ E FE K + E + L K+ +
Sbjct: 710 SVTTHKKVETMGNNAKT--EIFERKSACVWSLHEFISALSNKV---------KLSFKSVA 758
Query: 132 EVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVK 191
+VLE N DE +++ QE E+L + Q K+++ + +E + K +
Sbjct: 759 KVLE-NIDE-NKFNEIKKNEQEGLKRLEELFLEIIYQNIKDKISYQMRETTIKNRKNDAF 816
Query: 192 EEEKEEVKE 200
+EK E++E
Sbjct: 817 YDEKGEIRE 825
Score = 26.6 bits (57), Expect = 1.6
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 41/196 (20%)
Query: 17 ESVSKKLELPIEN-FNHYQELSARLKENQEWLLIADDECLEKL-----DQVDWLELKETI 70
+SV+K LE EN FN + K QE L ++ LE + D++ + +++ET
Sbjct: 755 KSVAKVLENIDENKFNEIK------KNEQEGLKRLEELFLEIIYQNIKDKISY-QMRETT 807
Query: 71 SQNKNSVCMYKKGNEAQPFLEG------FEVKIKKPFLPTEMLKVLQKKLGSNASELEPS 124
+N+ + Y + E + FL+G +E+K +K L N +++
Sbjct: 808 IKNRKNDAFYDEKGEIREFLDGSLGADKYEIKNS---------SAQEKCLYENFMQVDSE 858
Query: 125 QNLDPTQEVLETNWDELENLGDLEALV-----------QEEPNNEEQLLPTLNDQ--EEK 171
D +E +T L ++ + NN++++L + + ++K
Sbjct: 859 IEKDTIEESNDTKIIVFGKLPRVKIPIGLNQTYSPDFGYVVENNDKKVLLVVETKGVDKK 918
Query: 172 EEVKEEEKEEVKEEEK 187
E++ EEK ++ +K
Sbjct: 919 SELRPEEKRKISTAKK 934
>ref|NP_223770.1| putative [Helicobacter pylori J99]
Length = 331
Score = 32.7 bits (73), Expect = 0.022
Identities = 32/150 (21%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 157 NEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEG 216
++E+ L L +E + +++ + E+ + E+ + + +++ ++ K+ + T+
Sbjct: 84 SQEESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQ-QAIQQLDKQNKEMSELLTKLS 142
Query: 217 ETLKD---------KEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEK-QEKTQ--- 263
+ L KE ++ E P + P + P+K ET +N+E+K QEK +
Sbjct: 143 QDLVSQIALIQKALKEQEEKAEKPLKSSTP---ANKNPPLKAETPKNQEKKTQEKAKVEF 199
Query: 264 DSPSAQELEAMQELVKEIQENSNGQENKEK 293
D +++ E QE + + N + E KE+
Sbjct: 200 DKDLSKQKEIFQEALSFFR-NKSYAEAKER 228
Score = 30.8 bits (68), Expect = 0.084
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 105 EMLKVLQKKLGSNASEL-EPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLP 163
E L+ L+ A+ L + SQ L+ + + N ++ L ++ N E L
Sbjct: 87 ESLRALKASQEVQANTLKQQSQTLEDLRNEIHANQQAIQQL--------DKQNKEMSELL 138
Query: 164 TLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKE 223
T Q+ ++ +++ KE+ ++ EK TP + P ET + + K +E
Sbjct: 139 TKLSQDLVSQIAL-----IQKALKEQEEKAEKPLKSSTPANKNPPLKAETPKNQEKKTQE 193
Query: 224 VSKELEAPQELEIPKEETQE 243
+K +E ++L KE QE
Sbjct: 194 KAK-VEFDKDLSKQKEIFQE 212
>ref|NP_223561.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 363
Score = 32.7 bits (73), Expect = 0.022
Identities = 20/81 (24%), Positives = 43/81 (52%), Gaps = 1/81 (1%)
Query: 167 DQEEKEEVKEEEKEEVKEEEK-EEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVS 225
DQ+ ++ ++ E+ E+K E K +E + K + Q+ +KP + + E + L K
Sbjct: 275 DQKLSDQKPQKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQKLSD 334
Query: 226 KELEAPQELEIPKEETQEQDP 246
++ + P E +I +++ +Q P
Sbjct: 335 QKPQKPLEQKISEQKPLDQKP 355
Score = 27.3 bits (59), Expect = 0.93
Identities = 18/75 (24%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 142 ENLGDLEALVQE--EPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVK 199
+ L + +AL Q+ E +E L L+DQ+ ++ ++++ E+ ++K + +++ ++
Sbjct: 284 QKLSEQKALEQKISEQKPQEPLDQKLSDQKPQKPLEQKISEQKPLDQK--LSDQKPQKPL 341
Query: 200 ETPQEEKKPKDDETQ 214
E E+KP D + Q
Sbjct: 342 EQKISEQKPLDQKPQ 356
Score = 26.9 bits (58), Expect = 1.2
Identities = 31/138 (22%), Positives = 57/138 (40%), Gaps = 14/138 (10%)
Query: 160 QLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETL 219
QL +E K+ ++E +E E ++ + +K+T + K DD +L
Sbjct: 61 QLTQVEMQEENKKTMQEVASAMKSNKETNESLKDFQGALKDTMENLNKGMDD------SL 114
Query: 220 KDKEVSKELEAPQELEIPKEETQEQDPIKEETQENK-------EEKQEKTQDSPSAQELE 272
K +E+ A + + + + NK +EK + ++ P+ Q L
Sbjct: 115 KANNALREVSALNSVSMIGKIAETDVSGANFDGNNKLSFSLFFDEKIDASKGVPAIQILN 174
Query: 273 AMQELVKEIQ-ENSNGQE 289
ELVK I ++ NGQ+
Sbjct: 175 ENNELVKTIPLKDYNGQK 192
>ref|NP_223219.1| putative [Helicobacter pylori J99]
Length = 321
Score = 32.3 bits (72), Expect = 0.029
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 166 NDQEEKEEVKEEE--KEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKD 221
N KEE ++E K + K E E+++++ TP+ E+K K+ + Q E +K+
Sbjct: 171 NSSSLKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDKQGKEAIKE 228
Score = 28.9 bits (63), Expect = 0.32
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 151 VQEEPNNEEQLLP-----TLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETP 202
++EE E + P + N+ EE K E +++E+ KE+ K + KE +KE P
Sbjct: 175 LKEEREQERAIKPDTKNNSFNETNPTEEKKLEPTPKLEEKHKEQDK-QGKEAIKENP 230
>ref|NP_223158.1| putative [Helicobacter pylori J99]
Length = 912
Score = 32.3 bits (72), Expect = 0.029
Identities = 34/198 (17%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 239 EETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESA 298
++ ++ P +++N + ++P+ + L + ++L+K + N+ + +
Sbjct: 171 KDFRDARPQPSASKDNGTQPITLDGNNPTQKPLTSQEDLLKNTELNNETTQEVKNLSLLE 230
Query: 299 EIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHE------LEKQEIAETPQD 352
+ +K + K QE KE+ + AL++ HE +E Q E +D
Sbjct: 231 QANAEKLAKLESEAKVSEQEFLKAKEQEAKRKVALKKKLEHERGNAGNIESQTKIEVGED 290
Query: 353 V------EIPQSQ----DKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESIED- 401
+ +IP+S+ ++E+ +L+ + ++ + T + + E+ +SI +
Sbjct: 291 IPTQIQAQIPKSRVRLNEREIYDLDYAIVKAKDLKPSFTTGGTQKRTDMNEEQIKSIAEN 350
Query: 402 -IPEPVMAKAMGEELPFL 418
P+ + E+LP +
Sbjct: 351 FDPKKIFGSGGFEDLPII 368
Score = 31.6 bits (70), Expect = 0.049
Identities = 29/117 (24%), Positives = 52/117 (43%), Gaps = 10/117 (8%)
Query: 128 DPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEK 187
+PTQ+ L + D L+N + E E + L L ++ K E + +V E+E
Sbjct: 197 NPTQKPLTSQEDLLKNTE-----LNNETTQEVKNLSLLEQANAEKLAKLESEAKVSEQEF 251
Query: 188 EEVKEEEKEEVKETPQEEKKPKDDETQEG--ETLKDKEVSKELEAPQELEIPKEETQ 242
+ KE +E K +KK + + G E+ EV +++ + +IPK +
Sbjct: 252 LKAKE---QEAKRKVALKKKLEHERGNAGNIESQTKIEVGEDIPTQIQAQIPKSRVR 305
Score = 25.8 bits (55), Expect = 2.7
Identities = 26/91 (28%), Positives = 42/91 (45%), Gaps = 20/91 (21%)
Query: 427 NNENDTETPKESVTETSKN-ENNTETPQE-----------KEESDKTSSPLELRLNLQDL 474
+ N T+ P S + KN E N ET QE E+ K S E +++ Q+
Sbjct: 194 DGNNPTQKPLTSQEDLLKNTELNNETTQEVKNLSLLEQANAEKLAKLES--EAKVSEQEF 251
Query: 475 LKSLNQESLKSLLENKTLSIKITLEDKKPNA 505
LK+ QE+ + +++K LE ++ NA
Sbjct: 252 LKAKEQEA------KRKVALKKKLEHERGNA 276
>ref|NP_224134.1| putative [Helicobacter pylori J99]
Length = 479
Score = 31.6 bits (70), Expect = 0.049
Identities = 52/306 (16%), Positives = 117/306 (37%), Gaps = 17/306 (5%)
Query: 130 TQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEE 189
++E+ E + + + +L Q +P++ +Q + E K K K + +
Sbjct: 105 SKELKEPHSNPIPSLNAPMQKPQNKPSSSQQSPQNFSYPESKLGSKNS-KNSLLQPLVTP 163
Query: 190 VKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKE 249
K EVK + P +Q D+E + + P E +P +
Sbjct: 164 SKVSPTNEVKTPTNDANPPLKHSSQ------DQENNLFVAPPTEKTLPNNTSSADASENN 217
Query: 250 ETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEV 309
E+ EN++ +++ P+ +E + + + + ++ + EI D +
Sbjct: 218 ESNENRDNVEKQAIRDPNIKEFACGKWVYDDENLQAYRPSILKRVDKDKEITTDITPCDY 277
Query: 310 VTEKTQAQELEVPKEK-TQESAEALQETQAHELEK-----QEIAETPQDVEIPQSQDKEV 363
T + ++ ++ P K + E L++ Q E + Q + T + +D
Sbjct: 278 STAENKSGKIITPYTKISVHKTEPLEDPQTFEAKNNFAILQARSSTEKCKRARARKDGTT 337
Query: 364 QELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVA 423
++ + +E ++ E+ ++ T K E + +D EP + EL + + +
Sbjct: 338 RQCYLIEEPLKQAWESEYEITTQLVKAIYERPKQ--DDQVEPTFYET--SELAYSSTRKS 393
Query: 424 KIPNNE 429
+I NE
Sbjct: 394 EITRNE 399
Score = 25.4 bits (54), Expect = 3.5
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 131 QEVLETNWD-ELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEE 189
+E L+ W+ E E L + E P ++Q+ PT + E + E + E
Sbjct: 344 EEPLKQAWESEYEITTQLVKAIYERPKQDDQVEPTFYETSELAYSSTRKSEITRNELNLN 403
Query: 190 VKEEEKEEVKE 200
K E EV E
Sbjct: 404 EKFMEFVEVYE 414
>ref|NP_223108.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 455
Score = 31.6 bits (70), Expect = 0.049
Identities = 20/68 (29%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Query: 166 NDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVS 225
N Q+ + ++E KE EK EVK+E EE+K+ + K +D D++
Sbjct: 123 NKQDALLQALKDEANHKKEREKREVKQE--EEIKDINAQLSKIRDSLKLIQNMFWDEKNP 180
Query: 226 KELEAPQE 233
+ PQE
Sbjct: 181 NSVNIPQE 188
Score = 28.1 bits (61), Expect = 0.54
Identities = 41/214 (19%), Positives = 90/214 (41%), Gaps = 22/214 (10%)
Query: 288 QENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEK-QEI 346
QE ++KT S+ + EI V E+ + +P E+L + + +E + ++
Sbjct: 32 QEIRKKTLTSSGL---YEIVVAVEEEENKKAPLIP--------ESLYDEELNEEDVVMQL 80
Query: 347 AETPQDVEIPQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPV 406
+ T +++ + K +T + P + +TP E Q+ ++++D
Sbjct: 81 SSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLE-DTPLEANKQDALLQALKDEANHK 139
Query: 407 MAKA-----MGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKT 461
+ EE+ +N ++KI D+ +++ KN N+ PQE E K
Sbjct: 140 KEREKREVKQEEEIKDINAQLSKI----RDSLKLIQNMFWDEKNPNSVNIPQEFAEIYKL 195
Query: 462 SSPLELRLNLQDLLKSLNQESLKSLLENKTLSIK 495
+ ++ + D + L+ E + + +++IK
Sbjct: 196 AKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIK 229
>ref|NP_222970.1| HEAT SHOCK PROTEIN [Helicobacter pylori J99]
Length = 856
Score = 31.6 bits (70), Expect = 0.049
Identities = 40/177 (22%), Positives = 76/177 (42%), Gaps = 20/177 (11%)
Query: 186 EKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKEL--------EAPQELEIP 237
E E K + + + EK+ + E +E + +E+ KEL + + E
Sbjct: 403 ESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQLEAQFENE 462
Query: 238 KEETQEQDPIKEETQENKEEKQ--EKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQ 295
KE +E +K E + K+E + ++ D A E+E + KE +E Q E Q
Sbjct: 463 KEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKEL-QHKWETMQ 521
Query: 296 ESAEIPQ----DKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAE 348
++ + Q + I E+V++ T +P +K +S + EL+K+ + +
Sbjct: 522 QNGALLQNALTENNIAEIVSQWT-----HIPVQKMLQSEKNRVLNIESELQKRVVGQ 573
Score = 31.2 bits (69), Expect = 0.064
Identities = 37/190 (19%), Positives = 87/190 (45%), Gaps = 22/190 (11%)
Query: 113 KLGSNASELEPSQ-NLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEK 171
++ A E+E + N QE+L+ EL +L + + ++ + NE+++ ++ K
Sbjct: 420 EMEKQALEMENKESNHKRMQEILK----ELSDLKEEKIQLEAQFENEKEVFKEIS--RLK 473
Query: 172 EEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDE------TQEGETLKDKEVS 225
E++ +KE + + + ++ + E + P++EKK K+ + Q G L++
Sbjct: 474 MEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETMQQNGALLQNALTE 533
Query: 226 KELE--APQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQE 283
+ Q IP ++ + + + E++ +K+ Q+ +A++ + K I+
Sbjct: 534 NNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQE-------KALKAIAKAIKR 586
Query: 284 NSNGQENKEK 293
N G + K
Sbjct: 587 NKAGLSDSNK 596
Score = 29.3 bits (64), Expect = 0.24
Identities = 39/167 (23%), Positives = 74/167 (43%), Gaps = 20/167 (11%)
Query: 215 EGETLKDKEVSKELEA----PQELEIPKEETQEQ--DPIKEETQENKEEKQEKTQDSPSA 268
E E K V + ++ Q LE+ +E+ + I +E + KEEK + ++
Sbjct: 403 ESEPAKLSSVKRSIQRLEMEKQALEMENKESNHKRMQEILKELSDLKEEKIQ--LEAQFE 460
Query: 269 QELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQ--EVVTEKTQAQELEVPKEKT 326
E E +E+ + E ++ E+ + + + Q EI+ ++ ++ + +EL+ E
Sbjct: 461 NEKEVFKEISRLKMEMEGLKKEAERFKRNGDYQQAAEIEYSKIPEKEKKEKELQHKWETM 520
Query: 327 QESAEALQETQAHELEKQEIAE-TPQDVEIP-----QSQDKEVQELE 367
Q++ LQ + L + IAE Q IP QS+ V +E
Sbjct: 521 QQNGALLQ----NALTENNIAEIVSQWTHIPVQKMLQSEKNRVLNIE 563
>ref|NP_223700.1| putative [Helicobacter pylori J99]
Length = 170
Score = 31.2 bits (69), Expect = 0.064
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 185 EEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAP---QELEIPKEET 241
E+ E+ EE TP +EK P ++E ++ + + + P EIP EE
Sbjct: 42 EKSHEINLEESPNNPNTPNDEKAPHNEEDHSNTLFQNLDAQEVINYPVVEHHFEIPFEEK 101
Query: 242 QEQ 244
+ +
Sbjct: 102 KRE 104
Score = 26.6 bits (57), Expect = 1.6
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 198 VKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQE 253
++E+P P D++ E + + L+A + + P E + P +E+ +E
Sbjct: 49 LEESPNNPNTPNDEKAPHNEEDHSNTLFQNLDAQEVINYPVVEHHFEIPFEEKKRE 104
Score = 24.6 bits (52), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 367 EIPKEETQENTETPQDVETPQEKETQEDHYESI 399
EI EE+ N TP D + P +EDH ++
Sbjct: 46 EINLEESPNNPNTPNDEKAP---HNEEDHSNTL 75
>ref|NP_223617.1| putative [Helicobacter pylori J99]
Length = 500
Score = 31.2 bits (69), Expect = 0.064
Identities = 32/153 (20%), Positives = 65/153 (41%), Gaps = 8/153 (5%)
Query: 164 TLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKE 223
+L D E E E+ + E +EEVK++++++ +E G D+E
Sbjct: 110 SLKDIAELENEHEKYEREFNRIVEEEVKKQKEKQSLSNRAKEGIRNVGNKMLGRNKSDEE 169
Query: 224 VSKELEAPQELEIPKE-----ETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELV 278
+ K E + E+ K+ + + IK+ N + + Q + S QEL Q+L+
Sbjct: 170 IEKRAERIAKNELEKDTKLVSSHDQYEKIKKSGSLNTKNLDPRIQ-ANSLQELN--QKLL 226
Query: 279 KEIQENSNGQENKEKTQESAEIPQDKEIQEVVT 311
+ + + + + S P K+++ + T
Sbjct: 227 QFVGADGKYMPYTKAVRISLNNPNLKDLEVIDT 259
>ref|NP_223415.1| putative [Helicobacter pylori J99]
Length = 529
Score = 31.2 bits (69), Expect = 0.064
Identities = 35/148 (23%), Positives = 64/148 (42%), Gaps = 20/148 (13%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKE-EVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEK 206
E +Q++ N+ L T D++E + E + +E +EK +++E+KE KE E+
Sbjct: 68 ECKLQQQYENKNLQLQTHFDKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQ 127
Query: 207 KPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSP 266
+ ++ + K + + KE +A + +D IK E EE
Sbjct: 128 ERENFK-------KQRAICKEAQAKALDAMLNYMAYTKDEIKSMILEQLEE--------- 171
Query: 267 SAQELEAMQELVKEIQENSNGQENKEKT 294
ELEA + + E +E K+K+
Sbjct: 172 ---ELEAQKSALIRRYEKEAKEEGKKKS 196
Score = 25.4 bits (54), Expect = 3.5
Identities = 27/158 (17%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 187 KEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDP 246
K ++ E + + E + K ++ + Q+ K+ ++ + +E + E Q ++
Sbjct: 45 KAKLMEFQAKSFVEAEEMRMKSQECKLQQQYENKNLQLQTHFDK-KEAHLKHLEAQHKEF 103
Query: 247 IKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEI 306
+++E + ++EK+E LE +++++ QE N ++ + +E+ D +
Sbjct: 104 VRDEKRYLEKEKKE----------LEKERQILE--QERENFKKQRAICKEAQAKALDAML 151
Query: 307 QEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQ 344
+ K + + + + E+ +E EA + EK+
Sbjct: 152 NYMAYTKDEIKSMIL--EQLEEELEAQKSALIRRYEKE 187
>ref|NP_224003.1| putative [Helicobacter pylori J99]
Length = 972
Score = 30.4 bits (67), Expect = 0.11
Identities = 20/75 (26%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 166 NDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVS 225
N + K+E + E++ ++ +VK ++KE++ +T QE K+ + ETL+ K
Sbjct: 725 NQKVPKDEFNALDNEKIVHFKRVKVKADKKEKLIQTIQE---VKEHAPLDKETLRKKIAQ 781
Query: 226 KELEAPQELEIPKEE 240
E++ P + E K++
Sbjct: 782 GEID-PYDTEKHKQD 795
>ref|NP_222757.1| DNA transformation compentancy [Helicobacter pylori J99]
Length = 328
Score = 30.4 bits (67), Expect = 0.11
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 226 KELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENS 285
KE + PK+ + P+KEE +E KE+++E AM+ + K+IQ+
Sbjct: 171 KENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETI---IIGDNTNAMKIIKKDIQKGY 227
Query: 286 NGQENKEK 293
++ ++
Sbjct: 228 KALKSSQR 235
Score = 28.5 bits (62), Expect = 0.42
Identities = 13/43 (30%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Query: 149 ALVQEEPNNEEQLLPTL-NDQEEKEEVKEEEKEEVKEEEKEEV 190
A ++ + N+E + D ++ + +EEKEE KE+E+E +
Sbjct: 165 AFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETI 207
Score = 27.3 bits (59), Expect = 0.93
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 92 GFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALV 151
GF+ KI + ++K LQ + SN S ++ S+ + V T + ++ +L+ +
Sbjct: 99 GFDAKILESNDRILLIKPLQIGVDSNISVID-SEGKIFSFYVFSTTFTSSKH-PNLQVFI 156
Query: 152 QEEPNNEEQLL-PTLNDQEEKEEVKEEEKEEVKE---EEKEEVKEEEKEEV 198
+++ + P +QE E ++ ++ + EEKEE KE+E+E +
Sbjct: 157 EDKNYYTNAFIKPQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEETI 207
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 356 PQSQDKEVQELEIPKEETQENTETPQDVETPQEKETQ 392
PQ +++E PK+ + N ++ E +EKE +
Sbjct: 169 PQKENQENMSENAPKDAQKNNKPLKEEKEETKEKEEE 205
>ref|NP_224091.1| SERYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 415
Score = 30.0 bits (66), Expect = 0.14
Identities = 22/89 (24%), Positives = 44/89 (48%), Gaps = 3/89 (3%)
Query: 98 KKPFLPTEMLKVLQKKLGSNASELEPSQNLDPT--QEVLETNWDELENLGDLEALVQEEP 155
KK + E L+ Q K+ S ++ +Q +D + ++ LE N +L L ++E
Sbjct: 40 KKQLIELEGLQAFQNKV-SKEFGIKMAQKMDTSDLKKELENNKIKLNELSKSVGEAEQEM 98
Query: 156 NNEEQLLPTLNDQEEKEEVKEEEKEEVKE 184
+ + ++P L D++ EE+ E+K+
Sbjct: 99 DLKLSIIPNLVDEKTPLGASEEDNIEIKK 127
>ref|NP_223684.1| METHIONYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 656
Score = 30.0 bits (66), Expect = 0.14
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 4 ILFNQNPMITKLLESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQVDW 63
IL N N + K+ + K LE E FN Y L+ + + + W+L ++E EKL+ +
Sbjct: 395 ILDNANSFVPKM--QLHKALE---ELFNIYDFLNKLIAKEEPWVLHKNNES-EKLEALLS 448
Query: 64 LELKETISQNKNSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEP 123
L + T+ Q+ + + A F V+I P + + K +L+
Sbjct: 449 L-IANTLLQSSFLLYAFMP-KSAMKLASAFRVEIT----PNNYERFFKAK------KLQD 496
Query: 124 SQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVK 183
D E L + +++E + +E + + E EE L EK E KE+EK
Sbjct: 497 MVLQDT--EPLFSKIEKIEKIEKIEKIEKIE-KGEEALA-------EKAEKKEKEKAPPT 546
Query: 184 EEEKEEVKEEEKEEVK 199
+E +++ +K E+K
Sbjct: 547 QENYISIEDFKKVEIK 562
>ref|NP_223318.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 906
Score = 30.0 bits (66), Expect = 0.14
Identities = 19/77 (24%), Positives = 35/77 (44%), Gaps = 9/77 (11%)
Query: 420 EAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLKSLN 479
EA+ + ND +PKE+ E KNE ET Q + +P E+++ + +
Sbjct: 19 EALENDGSKPNDLASPKETPKEAQKNEAQNETSQSNQ------TPKEMKVK---SISYVG 69
Query: 480 QESLKSLLENKTLSIKI 496
+ +L N+ I++
Sbjct: 70 LSYMSDMLANEIAKIRV 86
Score = 26.2 bits (56), Expect = 2.1
Identities = 12/35 (34%), Positives = 21/35 (59%), Gaps = 1/35 (2%)
Query: 350 PQDVEIPQSQDKEVQELEIPKEETQENTETPQDVE 384
P D+ P+ KE Q+ E E +Q N +TP++++
Sbjct: 28 PNDLASPKETPKEAQKNEAQNETSQSN-QTPKEMK 61
>ref|NP_224011.1| ATP-DEPENDENT PROTEASE LA [Helicobacter pylori J99]
Length = 831
Score = 29.6 bits (65), Expect = 0.19
Identities = 42/191 (21%), Positives = 82/191 (41%), Gaps = 23/191 (12%)
Query: 156 NNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEE-VKETPQEEKKPKDDETQ 214
NN EQ L L D +E ++ ++E+K + +++++ KE +KE ++ +K + Q
Sbjct: 185 NNTEQRLLDLIDIVIEETKTQKLQKEIKSKVHQKMEQTNKEYFLKEQLKQIQKELGTDKQ 244
Query: 215 EGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAM 274
E L + Q+LE K +E E +E K++ ++ + + +
Sbjct: 245 RDEDLN--------QYYQKLESIKPFLKE-----EAFKEIKKQIDRLSRTHADSSDSATL 291
Query: 275 QELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQ 334
Q V+ + + GQ K ++ +I KE + L+ PKE+ E +Q
Sbjct: 292 QNYVETMLDVPFGQYEK----KALDIKHVKEQLD-----NDHYSLKRPKERIVEYFATMQ 342
Query: 335 ETQAHELEKQE 345
+ +K E
Sbjct: 343 LLEMRHKKKPE 353
>ref|NP_223614.1| putative [Helicobacter pylori J99]
Length = 230
Score = 29.6 bits (65), Expect = 0.19
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 127 LDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKE-EEKEEVKEE 185
+D ++L+ ++ LENL L L +E NN ++ +LND++ + ++E + + EE
Sbjct: 82 IDYDNKLLQLHYS-LENLQTLRELKEEADNNYQE---SLNDEKLQNNLREWRDLKNTPEE 137
Query: 186 EKEEVKEEEKEEV 198
E EE K+ V
Sbjct: 138 ENYREFEEIKKMV 150
Score = 26.6 bits (57), Expect = 1.6
Identities = 17/59 (28%), Positives = 31/59 (51%), Gaps = 3/59 (5%)
Query: 160 QLLPTLNDQEEKEEVKEEEKEEVKE---EEKEEVKEEEKEEVKETPQEEKKPKDDETQE 215
QL +L + + E+KEE +E +EK + E ++K TP+EE + +E ++
Sbjct: 90 QLHYSLENLQTLRELKEEADNNYQESLNDEKLQNNLREWRDLKNTPEEENYREFEEIKK 148
>ref|NP_222882.1| putative PEPTIDYL-PROLYL CIS-TRANS ISOMERASE [Helicobacter pylori
J99]
Length = 299
Score = 29.6 bits (65), Expect = 0.19
Identities = 26/128 (20%), Positives = 54/128 (41%), Gaps = 12/128 (9%)
Query: 116 SNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVK 175
+N S + D + VL T D + + Q PN + +++K
Sbjct: 27 ANNSTHNTKETTDASAGVLATVDGRPITKSDFDMIKQRNPNFDF------------DKLK 74
Query: 176 EEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELE 235
E+EKE + E+ E + + ++ Q + E + + L + K+ E ++++
Sbjct: 75 EKEKEALIEQAIRTALVENEAKAEKLNQTPEFKAMMEAVKKQALVEFWAKKQAEEVKKIQ 134
Query: 236 IPKEETQE 243
IP++E Q+
Sbjct: 135 IPEKEMQD 142
>ref|NP_224160.1| TYPE II RESTRICTION ENZYME [Helicobacter pylori J99]
Length = 326
Score = 29.3 bits (64), Expect = 0.24
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 147 LEALVQEEPNNEEQLLPTLNDQEEK--EEVKEEEKEEVKEEEKEEVKEEEKEEV 198
LE V E N E +L TLN++ ++ +++K KE+ EK VK+E+ E+
Sbjct: 177 LEQSVFFETNKERLILKTLNEENKQNDKKLKRSIKEKALYFEKHGVKKEKGFEL 230
>ref|NP_222822.1| 70kDa chaperone [Helicobacter pylori J99]
Length = 620
Score = 29.3 bits (64), Expect = 0.24
Identities = 39/202 (19%), Positives = 77/202 (37%), Gaps = 17/202 (8%)
Query: 260 EKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQEL 319
E Q + S L+ +EL ++ N K Q A P+ EV + L
Sbjct: 424 EDNQPAVSIMVLQGERELARD-----NKSLGKFDLQGIAPAPRGMPQIEVTFDIDANGIL 478
Query: 320 EVP-KEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQD---KEVQELEIPKEETQE 375
V ++K ++ ++ + + L EI + +D E+ + +D KEV E +
Sbjct: 479 TVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAH 538
Query: 376 NTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETP 435
T+ D E + ++ A+ + + N A++ +
Sbjct: 539 QTQKSLDEHKTNLNENDANEIQNA--------INALKDCIKNDNATKAELEDKTKALTQA 590
Query: 436 KESVTETSKNENNTETPQEKEE 457
+ + E N+NN E P++K++
Sbjct: 591 AQKLGEAMANKNNAEQPKKKDD 612
Score = 26.9 bits (58), Expect = 1.2
Identities = 29/132 (21%), Positives = 54/132 (39%), Gaps = 19/132 (14%)
Query: 165 LNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEV 224
L+D E ++ VK+ E + ++ K+EV E Q +K + +T E
Sbjct: 501 LSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKTNLNEN------ 554
Query: 225 SKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQEN 284
EI +D IK + K E ++KT+ +A Q+L + +
Sbjct: 555 -------DANEIQNAINALKDCIKND-NATKAELEDKTK-----ALTQAAQKLGEAMANK 601
Query: 285 SNGQENKEKTQE 296
+N ++ K+K +
Sbjct: 602 NNAEQPKKKDDD 613
>ref|NP_224180.1| putative [Helicobacter pylori J99]
Length = 176
Score = 28.9 bits (63), Expect = 0.32
Identities = 23/93 (24%), Positives = 45/93 (47%), Gaps = 17/93 (18%)
Query: 209 KDDETQEGETLKDKEVSKEL-------EAPQELEIPKEETQEQDPIKEETQENKEE---- 257
KD ++E E++K +K++ +E +I + + Q Q+ K+E + N EE
Sbjct: 39 KDKLSEEAESIKGNLKAKDIYIVFDSDNQTKETKIQEIKKQLQENTKQEHRLNDEEFNQI 98
Query: 258 ------KQEKTQDSPSAQELEAMQELVKEIQEN 284
+ ++T+ P+ ELE + E + + EN
Sbjct: 99 KIFLLPENDETKHHPNYCELEPLLEKMAKESEN 131
Score = 25.0 bits (53), Expect = 4.6
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 169 EEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEE--KKPKDDETQ 214
+ + KE + +E+K++ +E K+E + +E Q + P++DET+
Sbjct: 63 DSDNQTKETKIQEIKKQLQENTKQEHRLNDEEFNQIKIFLLPENDETK 110
>ref|NP_223656.1| putative [Helicobacter pylori J99]
Length = 337
Score = 28.9 bits (63), Expect = 0.32
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 151 VQEEPNNEEQLLPTLNDQEEKEEVKE---EEKEEVKEEEKEEVKEEEKEEVKETPQEEK 206
V+EE + + L D E+KEE+ + E KE+ K ++ + E KE KE P +++
Sbjct: 87 VEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKEFPNKKQ 145
Score = 28.5 bits (62), Expect = 0.42
Identities = 23/91 (25%), Positives = 43/91 (46%), Gaps = 7/91 (7%)
Query: 229 EAPQE-----LEIPKEETQEQ--DPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEI 281
E PQE E +EE +Q + I +E E+KEE +K ++ ++ + + E+
Sbjct: 74 EFPQEYREKIFECVEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEM 133
Query: 282 QENSNGQENKEKTQESAEIPQDKEIQEVVTE 312
+E+S NK++ Q E D + + +
Sbjct: 134 KEHSKEFPNKKQLQTMLENAFDNGAESFIDD 164
Score = 24.6 bits (52), Expect = 6.0
Identities = 19/68 (27%), Positives = 33/68 (47%)
Query: 168 QEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKE 227
+E+ E EEEK + + E+KEE+ + +E K+ Q+ + KE SKE
Sbjct: 80 REKIFECVEEEKHKQALNLINKEDTEDKEELAKKIKEIKEKAKVLRQKFMAFEMKEHSKE 139
Query: 228 LEAPQELE 235
++L+
Sbjct: 140 FPNKKQLQ 147
>ref|NP_223644.1| putative [Helicobacter pylori J99]
Length = 465
Score = 28.9 bits (63), Expect = 0.32
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 34 QELSARLKENQEWLLIADDECLEKLDQVDWLELKETISQNKNSVCMYKKGN--EAQPFLE 91
+E + ++EN+++ L + LE++ Q K + + SV + GN E +PF E
Sbjct: 341 KEEQSAIQENRDYSLRSALLSLEEIAQA-----KIELQKYYESVYVNGDGNKREIKPFKE 395
Query: 92 ------GFEVKIKKPF--LPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETN 137
FE K+ + L + ++Q K G N + + N +P + +ETN
Sbjct: 396 ILRDTNNFEKAYKERYDKLVSLSAAIIQAKEGGNERQNSSANNNNPIKNTIETN 449
>ref|NP_223639.1| putative [Helicobacter pylori J99]
Length = 328
Score = 28.9 bits (63), Expect = 0.32
Identities = 16/55 (29%), Positives = 33/55 (59%), Gaps = 2/55 (3%)
Query: 162 LPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEG 216
LP + ++ KE+ ++ ++ VK + E EE +E+VK +E++K + ++T G
Sbjct: 11 LPKILEERLKEKYGDDWEKHVKAKAINE--EELEEQVKAKAKEQQKTQREKTLNG 63
Score = 27.7 bits (60), Expect = 0.71
Identities = 15/45 (33%), Positives = 27/45 (59%), Gaps = 1/45 (2%)
Query: 158 EEQLLPTLNDQEEKE-EVKEEEKEEVKEEEKEEVKEEEKEEVKET 201
EE+L D EK + K +EE++E+ K + KE++K + ++T
Sbjct: 16 EERLKEKYGDDWEKHVKAKAINEEELEEQVKAKAKEQQKTQREKT 60
>ref|NP_223323.1| putative [Helicobacter pylori J99]
Length = 335
Score = 28.9 bits (63), Expect = 0.32
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 221 DKEVSKELEAPQ---ELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQ-E 276
+K+ SK LE + ELE+PK ET + ENKE+ + S ++ +L+ +
Sbjct: 152 EKDYSKALETLECLEELEVPKIETIKNYLYLMHLIENKEDAAKILHVSKASLDLKKIALN 211
Query: 277 LVKEIQENSNGQE--NKEKTQESAEIPQDKEIQEVVTEK 313
+K EN QE E+ + ++ D I + EK
Sbjct: 212 HLKSHDENLFWQEIDTTERLENVIDLLWDMNIPAFILEK 250
>ref|NP_224163.1| 30S RIBOSOMAL PROTEIN S2 [Helicobacter pylori J99]
Length = 264
Score = 28.5 bits (62), Expect = 0.42
Identities = 14/45 (31%), Positives = 27/45 (59%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKE 192
EA+++ +E+++ + EE E V EEKEE+ E ++E+ +
Sbjct: 217 EAILEGRELMQEEIVHADENSEEIEFVSNEEKEEMLAEIQKEITQ 261
>ref|NP_223418.1| FUNCTIONAL HOMOLOG OF SRP RECEPTOR [Helicobacter pylori J99]
Length = 293
Score = 28.5 bits (62), Expect = 0.42
Identities = 13/28 (46%), Positives = 21/28 (74%)
Query: 171 KEEVKEEEKEEVKEEEKEEVKEEEKEEV 198
K+ V + + EEVKE+++E V +EE EE+
Sbjct: 6 KKIVNKIKGEEVKEKKRESVPKEELEEI 33
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
Length = 673
Score = 28.5 bits (62), Expect = 0.42
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 250 ETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQ 307
+ Q + E KTQ+S ++A + ++ E +N EN + TQE A +P++K++Q
Sbjct: 365 QMQASINENILKTQES-----IQADNKAIQNSIEVTNYVENGDFTQEIACVPKNKDLQ 417
>ref|NP_224071.1| DNA POLYMERASE III, ALPHA CHAIN [Helicobacter pylori J99]
Length = 1211
Score = 28.1 bits (61), Expect = 0.54
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 207 KPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSP 266
K K +E +E L+ E+ +LE+ +E++IPK ++ + KE+ +E + +
Sbjct: 1087 KCKIEEQEEVARLRLFEIL-DLESAREVKIPKARYKDPEKQKEDVREIPPMEMLASSSCS 1145
Query: 267 SAQELE--AMQELVKEIQENSNGQENK 291
A LE +E +++I+E++ + K
Sbjct: 1146 LAIVLENDVKKEFLRQIKESALKHQGK 1172
>ref|NP_223914.1| phosphohexosemutase [Helicobacter pylori J99]
Length = 459
Score = 28.1 bits (61), Expect = 0.54
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 147 LEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETP 202
LE L+++ P++ E + L EEK V EEEK E+ +E +K P
Sbjct: 347 LELLLEQSPSDLENTIKNL----PYSYTTPEEKIAVSEEEKFEIIRNLQEALKNPP 398
>ref|NP_223038.1| putative [Helicobacter pylori J99]
Length = 112
Score = 28.1 bits (61), Expect = 0.54
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 150 LVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPK 209
+V++ E L N++E K + EEK +++ +E+KE++++ K +E K
Sbjct: 48 IVEKRLIKENMQLSDFNEEELKIMFEAEEKRLLEQIHAKELKEKQEKTTKHF--KEVWEK 105
Query: 210 DDETQE 215
D QE
Sbjct: 106 GDNEQE 111
Score = 25.4 bits (54), Expect = 3.5
Identities = 19/93 (20%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 169 EEKEEVKEEEKEEVKEEEKEEVKEEEKEEV-KETPQEEKKPKDDETQEGETLKDKEVSKE 227
+ E ++ K + +E+ ++++E+ + V K +E + D +E + + + E +
Sbjct: 20 KNSNEAFQKTKRALFKEKSQKIREQAVKIVEKRLIKENMQLSDFNEEELKIMFEAEEKRL 79
Query: 228 LEAPQELEIPKEETQEQDPIKE--ETQENKEEK 258
LE E+ +++ + KE E +N++EK
Sbjct: 80 LEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
Score = 24.6 bits (52), Expect = 6.0
Identities = 14/50 (28%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 157 NEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEK 206
NEE+L + + EEK +++ +E+KE++++ K ++ K ++EK
Sbjct: 64 NEEEL-KIMFEAEEKRLLEQIHAKELKEKQEKTTKHFKEVWEKGDNEQEK 112
>ref|NP_224142.1| TYPE I RESTRICTION ENZYME (RESTRICTION SUBUNIT) [Helicobacter
pylori J99]
Length = 991
Score = 27.7 bits (60), Expect = 0.71
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 12/98 (12%)
Query: 172 EEVKEEEKEEVKEEEKEEVK---EEEKEEVKETPQEEKKPKDDETQE----GETLKDKEV 224
E + E+ + + ++ +++K EE ++++K + K+PKD+E G+ L+
Sbjct: 674 ENYEREDIQGLISDKSQKIKKKLEETRDQLKSLCESVKEPKDEEDYIAYFCGDNLEKNAQ 733
Query: 225 SKEL---EAPQELEIPKEETQEQDPI--KEETQENKEE 257
+ L L + E + PI KEETQ+ K+E
Sbjct: 734 KRRLFYQLVGAFLRMFVELNNLEKPIYSKEETQQIKQE 771
>ref|NP_223771.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 179
Score = 27.7 bits (60), Expect = 0.71
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 22/123 (17%)
Query: 164 TLNDQEEKEEVKEEEKEEVKEE----------------EKEEVKEEEKEEVKETPQEEKK 207
T EKEE K+E V+E+ +K E+KE ++E + E Q+ K+
Sbjct: 43 TTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKE 102
Query: 208 PKDDETQEGET--LKDKEVSKELEAPQELEIPKE---ETQEQDPIKE-ETQENKEEKQEK 261
EG T E ++ L + L + + E+D IK E+K + +K
Sbjct: 103 NHMQVLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQK 162
Query: 262 TQD 264
T++
Sbjct: 163 TRE 165
>ref|NP_223180.1| putative [Helicobacter pylori J99]
Length = 706
Score = 27.7 bits (60), Expect = 0.71
Identities = 13/43 (30%), Positives = 28/43 (64%)
Query: 170 EKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDE 212
E+ + K+E+KE+ +++EKEE K +++++V + + P E
Sbjct: 554 EEYKPKKEKKEKKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRE 596
Score = 27.3 bits (59), Expect = 0.93
Identities = 11/28 (39%), Positives = 23/28 (81%)
Query: 168 QEEKEEVKEEEKEEVKEEEKEEVKEEEK 195
+E K + +++EK+E KE+E+ ++K+E+K
Sbjct: 554 EEYKPKKEKKEKKEKKEKEEYKLKKEKK 581
Score = 26.2 bits (56), Expect = 2.1
Identities = 42/204 (20%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 113 KLGSNASELEPSQNLDPTQEVLE-TNWD-ELENLGDLEALVQEEPNNEEQLLPTLNDQEE 170
KL N +LEP + + + +W ++ LEA EE +++ ++E
Sbjct: 512 KLNKNLKDLEPFGEKEIEKRASDLVDWALKIWTYPILEAETLEEYKPKKE-------KKE 564
Query: 171 KEEVKEEEKEEVKEEEKEEVKEEEK-----EEVKETPQEEKKPKDDETQEGETLKDKEVS 225
K+E KE+E+ ++K+E+K K E+ + ++E K D+ E K ++
Sbjct: 565 KKEKKEKEEYKLKKEKKVYDLSSYKFSPHSRELFDILRKEIKTLDERVT--ENFNSKYIA 622
Query: 226 KELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQ-------DSPSAQELEAMQE-- 276
+ ++I + + +K E E ++E +EK + P ++++E E
Sbjct: 623 YKFFKINFVDIVVQNKVLKLYLKMEFNELQDEIKEKLKIRDVSNIGCPCSEDMEVELETK 682
Query: 277 --------LVKEIQENSNGQENKE 292
L+++ E G N++
Sbjct: 683 ENIPYCLGLIRQALEKQMGGRNRQ 706
>ref|NP_223651.1| putative [Helicobacter pylori J99]
Length = 339
Score = 27.3 bits (59), Expect = 0.93
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 173 EVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELE-AP 231
++++ ++ E K EE+EE ++ + + + +E K PK ++ +DK+ S + +P
Sbjct: 2 DLQQIDELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSP 61
Query: 232 QELEIPKEETQEQDPIKEETQENKEE-------KQEKTQDSPSAQELEAMQELVKEIQEN 284
++ E E KE EE ++ TQ+ ++LE +Q K I +
Sbjct: 62 CVIKELNEFLLEFGSFKETRSTFIEEALIRHLKHRKNTQEQKLLKQLERLQNKEKGIMKT 121
Query: 285 SNGQE 289
N E
Sbjct: 122 MNLNE 126
Score = 26.6 bits (57), Expect = 1.6
Identities = 20/67 (29%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Query: 249 EETQENKEEKQEKTQDSPSAQELEAMQELV--KEIQENSNGQENKEKTQESAEIP-QDKE 305
+E + EE++E+ QD+P QE + + K ++ S E+K+K+ A P KE
Sbjct: 7 DELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDEDKKKSFNIAFSPCVIKE 66
Query: 306 IQEVVTE 312
+ E + E
Sbjct: 67 LNEFLLE 73
Score = 25.0 bits (53), Expect = 4.6
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 337 QAHELEKQEIAETPQDVEIPQSQDKEVQELEIPKEETQENTETPQD 382
Q ELE + + Q + P Q+ +E++IPK+ ++ + +D
Sbjct: 5 QIDELENKFEEQEEQAQDTPLKQEPSTKEVKIPKKRGRKKSLLDED 50
>ref|NP_223288.1| putative 2,3,4,5-TETRAHYDROPYRIDINE-2-CARBOXYLATE
N-SUCCINYLTRANSFERASE [Helicobacter pylori J99]
Length = 401
Score = 27.3 bits (59), Expect = 0.93
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 387 QEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNEN 430
+EK +E E + +I E + KA+ PFLNEA + ++N
Sbjct: 65 KEKILKESASECVVEIDESFVLKALDFYTPFLNEAYSNKMAHKN 108
>ref|NP_223283.1| DNA MISMATCH REPAIR PROTEIN [Helicobacter pylori J99]
Length = 762
Score = 27.3 bits (59), Expect = 0.93
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 24/128 (18%)
Query: 175 KEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQEL 234
+++EK V E ++ E K++ + E K+ E + L + E KE+ ++L
Sbjct: 511 EDKEKLNVLIENSSTLERELKQKNEHL---ENALKEQEDLKNAWLLEMEKQKEIFHHKKL 567
Query: 235 EIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKT 294
E+ K Q + +K E K E+ E++ NK KT
Sbjct: 568 ELEKSYQQALNILKSEVASKDTSSMHK--------EIHKASEIL-----------NKHKT 608
Query: 295 QESAEIPQ 302
+ EIPQ
Sbjct: 609 DQ--EIPQ 614
>ref|NP_223084.1| putative [Helicobacter pylori J99]
Length = 160
Score = 27.3 bits (59), Expect = 0.93
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 96 KIKKPFLPTEMLKVLQKKL----GSNASELEPSQ-----NLDPTQEVLETNWDELENLGD 146
+IKK L E K+ + K+ G ELE ++ + Q++++ LE
Sbjct: 58 EIKKETL--EYQKLFENKVESLKGVKIEELEDAKVTAENEIKSIQDLMQDYKRSLET-NT 114
Query: 147 LEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEE 189
+ + EE +NEE L ++ E +EV+ KE +KE+
Sbjct: 115 IPNHLNEEVSNEEALNKEVSSDESPKEVQLTTDNNAKEHDKEK 157
>ref|NP_223039.1| putative [Helicobacter pylori J99]
Length = 186
Score = 27.3 bits (59), Expect = 0.93
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 169 EEKEEVKEEEKEEVKEEEKEEVKEEEK-----EEVKETPQEEKKPKDDETQEGETLKDKE 223
+ K +++E K +++ K EK EE+ QEE K+D E K
Sbjct: 109 QRKRQIRENLKNR---SNRKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSN 165
Query: 224 VSKE--LEAPQELEIPKEE 240
+++E L+ +EL+ K++
Sbjct: 166 ITEEMILKKQEELKARKDK 184
Score = 24.6 bits (52), Expect = 6.0
Identities = 14/61 (22%), Positives = 29/61 (46%)
Query: 152 QEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDD 211
+++ N E+L + K++ + KE+ +E ++ EE+ QEE K + D
Sbjct: 124 RKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITEEMILKKQEELKARKD 183
Query: 212 E 212
+
Sbjct: 184 K 184
Score = 24.3 bits (51), Expect = 7.9
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 12/86 (13%)
Query: 242 QEQDPIKEETQENKEEKQEKTQDSPS--AQELEAMQELVKEIQENSNGQENKEKTQESAE 299
Q + I+E + K K + S A+E+ + ++ +E+SN + +K+K E
Sbjct: 109 QRKRQIRENLKNRSNRKDAKNFEKLSNIAEEIISKKQEESHHKEDSNDENHKDKLSNITE 168
Query: 300 IPQDKEIQEVVTEKTQAQELEVPKEK 325
E++ +K +EL+ K+K
Sbjct: 169 --------EMILKK--QEELKARKDK 184
>ref|NP_223725.1| putative outer membrane protein [Helicobacter pylori J99]
Length = 751
Score = 26.9 bits (58), Expect = 1.2
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 340 ELEKQEIAETPQDVE-IPQSQDKEVQELEIPKEETQENTETPQDV 383
+ ++Q IA+ Q+ + I ++ Q E PKE+ + +T TPQ V
Sbjct: 46 QTKEQAIAQNTQNTQKIYENPLTHPQTKEQPKEQNKSDTATPQSV 90
>ref|NP_223199.1| cag island protein [Helicobacter pylori J99]
Length = 280
Score = 26.9 bits (58), Expect = 1.2
Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 24/196 (12%)
Query: 67 KETISQNKNSVCMYKKGNEAQPFLEGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQN 126
K T+ + N + YK +A + ++ P L + + ++ N + E Q
Sbjct: 92 KITLIGDANKILQYKNYFQANGARSDIDFYLQ-PTLNQKGVVMIASNYNDNPNNKEKPQT 150
Query: 127 LDPTQEVLETNWDEL-ENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEE 185
D VL+ + L N +L NN++ + ++ + E++ + K ++++
Sbjct: 151 FD----VLQGSQPMLGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKTLLQDK 206
Query: 186 EKE-EVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQ 244
E+E ++ + E+ ET + G ++ +S E+ L + +E
Sbjct: 207 EQEYTTRKNNQREILETLSN---------RAGYQMRQNVISSEIFKNGNLNMQAKE---- 253
Query: 245 DPIKEETQENKEEKQE 260
EE +E +E++E
Sbjct: 254 ----EEVREKLQEERE 265
>ref|NP_223146.1| GLUTAMYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 463
Score = 26.9 bits (58), Expect = 1.2
Identities = 25/133 (18%), Positives = 58/133 (42%), Gaps = 6/133 (4%)
Query: 168 QEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEV-SK 226
Q ++ E+ +E +++ +E+K KEE+ +E+K K+ + K K
Sbjct: 76 QSKRFEIYKEYIQKLLDEDKAYYCYMSKEELDALREEQKARKETPRYDNRYRDFKGTPPK 135
Query: 227 ELEAPQELEIPKEET-QEQDPIKEETQENKEEKQE----KTQDSPSAQELEAMQELVKEI 281
+E +++P+ E D +K E + N E + ++ +P+ + + + + I
Sbjct: 136 GIEPVVRIKVPQNEVIGFNDGVKGEVKVNTNEIDDFIIARSDGTPTYNFVVTIDDALMGI 195
Query: 282 QENSNGQENKEKT 294
+ G ++ T
Sbjct: 196 TDVIRGDDHLSNT 208
>ref|NP_223088.1| putative [Helicobacter pylori J99]
Length = 289
Score = 26.9 bits (58), Expect = 1.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 436 KESVTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENK 490
KE++TET+ E NT +K + LEL+ ++ K ++++SL + K
Sbjct: 31 KENMTETNTTEENTPKDAPILLEEKRAQTLELK-EENEVAKKIDEKSLLEEIHKK 84
>ref|NP_222840.1| putative [Helicobacter pylori J99]
Length = 285
Score = 26.9 bits (58), Expect = 1.2
Identities = 13/77 (16%), Positives = 39/77 (49%), Gaps = 9/77 (11%)
Query: 130 TQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEE 189
TQ + D + N L+ +EP + ++++ K++ + KE++++
Sbjct: 218 TQNSSNPDLDPMTNANTLKETASKEPETSSK---------KEKKPKKKRRLSKKEKQQQA 268
Query: 190 VKEEEKEEVKETPQEEK 206
+++E ++++ ++ + EK
Sbjct: 269 LQQEFEKQISDSSKSEK 285
Score = 26.2 bits (56), Expect = 2.1
Identities = 16/82 (19%), Positives = 35/82 (42%)
Query: 134 LETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEE 193
LE++ D E + + P+ + + +E + K+E K ++K + ++
Sbjct: 203 LESHTDSPEFISSSKTQNSSNPDLDPMTNANTLKETASKEPETSSKKEKKPKKKRRLSKK 262
Query: 194 EKEEVKETPQEEKKPKDDETQE 215
EK++ + EK+ D E
Sbjct: 263 EKQQQALQQEFEKQISDSSKSE 284
>ref|NP_223790.1| putative [Helicobacter pylori J99]
Length = 285
Score = 26.6 bits (57), Expect = 1.6
Identities = 35/160 (21%), Positives = 63/160 (38%), Gaps = 44/160 (27%)
Query: 125 QNLDPTQEVLETNWDELENLGDLEALVQEEP---------NNEEQLLPTL---------- 165
+N+ T+ + +W+ L L DL+A+ + + NN EQLL +
Sbjct: 21 KNMGKTETTIFVDWENL--LADLKAIQETDERLKESNFNFNNPEQLLALIRSFLEPEEEL 78
Query: 166 --------------------NDQEEKEEVKEEEKEEVKEE-EKEEVKEEEKEEVKETPQE 204
N +EE EE KE+ +E +E+ K + + + + Q
Sbjct: 79 KRIYFYVSEPFTEVEPRIKSNKKEELEEYKEKNPKEYEEKVNKSGIIQSFNHAIAQQNQV 138
Query: 205 EKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQEQ 244
+ + + KD+ V LEA E+ IP E +++
Sbjct: 139 KLRVGRVRFMFKDMPKDQRVHGGLEA--EILIPHLELRQK 176
>ref|NP_223661.1| putative [Helicobacter pylori J99]
Length = 255
Score = 26.6 bits (57), Expect = 1.6
Identities = 19/102 (18%), Positives = 45/102 (43%), Gaps = 2/102 (1%)
Query: 364 QELEIPKEETQENTETPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVA 423
++L+IPK+E + + + + + ++ P + +K +E ++E +
Sbjct: 83 EKLKIPKKEKEILQPLNANEKQVLNTALENNEIDARTFKPWDLGSKEASKENASMSEELT 142
Query: 424 KIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPL 465
+ NN + + S+ + S +NN + P K + K + L
Sbjct: 143 Q--NNSKLSHFNENSIAQNSVGQNNVKEPNTKSNNSKQNHSL 182
>ref|NP_222839.1| putative [Helicobacter pylori J99]
Length = 143
Score = 26.6 bits (57), Expect = 1.6
Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 217 ETLKDKEVSKELEAPQELEIPKEETQEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQE 276
+++ +K++ ++ E+P+ T+ + + + KEE+++K + A +AM
Sbjct: 25 KSMDNKQLLEQAGKVAPSEVPEFRTE----VNKRLEAMKEEERQKYK----ADFKKAMD- 75
Query: 277 LVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQET 336
K + S NK K KEI EV+ K + ++ +E+ + + E
Sbjct: 76 --KNLASLSQEDRNKRK----------KEILEVIANKKKTMTMKEYREEGLDLHDCACEG 123
Query: 337 QAHELEKQ 344
H+ EK+
Sbjct: 124 PFHDHEKK 131
>ref|NP_223990.1| putative [Helicobacter pylori J99]
Length = 1164
Score = 26.2 bits (56), Expect = 2.1
Identities = 23/117 (19%), Positives = 50/117 (42%)
Query: 91 EGFEVKIKKPFLPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEAL 150
+ F+ + KKP + LK++ SE+ + L+P E +N E++ ++ +
Sbjct: 418 QAFKEEFKKPLKENDTLKIILTNTLIQPSEIIAYRGLNPIFEKELSNAQEIKKNENILII 477
Query: 151 VQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKK 207
P + L + E K E + + E EK ++ + + + Q++K+
Sbjct: 478 TGNPPYSGASENKGLFEWEVKATYGIEPEFQTIEIEKNVKLTDKIQTLLKNVQKQKE 534
>ref|NP_223915.1| putative [Helicobacter pylori J99]
Length = 123
Score = 26.2 bits (56), Expect = 2.1
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 134 LETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEE 193
+E W EL ++ ++ E + + +++E E EKE ++EE +V+ E
Sbjct: 34 MEPKWRELADIRSKMFAESKKQLKERGIQLKEKSKAQQQESFEREKELMEEEF--QVQRE 91
Query: 194 EKEEVKETPQEEKKP--KDDETQEGETLKDKE 223
E P ++ KP K D+T + E +K+
Sbjct: 92 LLEIYYGYPTQKNKPGIKYDDTIDIEPEDEKD 123
>ref|NP_223137.1| putative [Helicobacter pylori J99]
Length = 115
Score = 26.2 bits (56), Expect = 2.1
Identities = 11/55 (20%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 153 EEPNNEEQLLPTLNDQEEKEEVKEEEKEE-------VKEEEKEEVKEEEKEEVKE 200
++P E+ + L E++ + +++++E K+E + K++ KE++K+
Sbjct: 59 QDPEKREEYIERLKKNHERKMILQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
Score = 25.4 bits (54), Expect = 3.5
Identities = 12/50 (24%), Positives = 35/50 (70%), Gaps = 3/50 (6%)
Query: 148 EALVQEEPNNEEQLLPTLNDQEEKEEVK-EEEKEEVKEEEKEEVKEEEKE 196
E + + + N+E +++ L D++++E+++ + K+E + +K+++KE+ K+
Sbjct: 66 EYIERLKKNHERKMI--LQDKQKEEQMRLYQAKKERESRQKQDLKEQMKK 113
>ref|NP_222811.1| THREONINE SYNTHASE [Helicobacter pylori J99]
Length = 486
Score = 26.2 bits (56), Expect = 2.1
Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 324 EKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQD----KEVQELEIPKEE-TQENTE 378
E+T E +AL+E + + L+ +E+A + D K +QE+ + +T
Sbjct: 336 ERTLELMQALEEEKFYALKPKELALLQEHFSCASCSDEDCLKTIQEVYAEHQYLIDPHTA 395
Query: 379 TPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKES 438
T + ++T S E P+ + LNE +ND + ++
Sbjct: 396 TALNASLKTHEKTLVSATASYEKFPKTTLLA--------LNE------QKKNDDD---KA 438
Query: 439 VTETSKNENNTETPQEKEESDKTSSPLELRLNLQDLLKSL 478
ET KN NT Q ++ + + L L ++ S+
Sbjct: 439 ALETLKNSYNTPDSQRLDDLFERGIKHQEVLKLNEIKSSI 478
>ref|NP_224153.1| putative [Helicobacter pylori J99]
Length = 435
Score = 25.8 bits (55), Expect = 2.7
Identities = 27/102 (26%), Positives = 48/102 (46%), Gaps = 12/102 (11%)
Query: 252 QENKEEKQEKTQDSPS----AQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQ 307
+E +EK EK +D + A+EL+ L+ Q N +EN+ I +D E +
Sbjct: 196 KERLKEKLEKLEDPKTLQLEAKELQTQASLLLTYQHLINRRENR-------VILKDFEDK 248
Query: 308 EVVTEKTQAQELEV-PKEKTQESAEALQETQAHELEKQEIAE 348
E + E ++ L +K S + Q++Q LE++ + E
Sbjct: 249 ECMIEIDKSMPLNAFINKKFTLSKKKKQKSQFLYLEEENLKE 290
>ref|NP_224152.1| DNA REPAIR PROTEIN(RECOMBINATION PROTEIN N) [Helicobacter pylori
J99]
Length = 522
Score = 25.8 bits (55), Expect = 2.7
Identities = 65/311 (20%), Positives = 122/311 (38%), Gaps = 51/311 (16%)
Query: 102 LPTEMLKVLQKKLGSNASELEPSQNLDPTQEVLETNWDELENLGDLEALVQEEPNNEEQL 161
L LK L K L S SQN +++ L L+ +Q + L
Sbjct: 107 LSKNTLKALLKGLIKRLSNDRFSQN----------ELNDILMLSLLDGYIQNKNKAFSPL 156
Query: 162 LPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQ------- 214
L L + + E E E+ ++++++ + EE+ ++ E K+DE +
Sbjct: 157 LDALETKFTRLEKLERERRSLEDKKRFQKDLEERLNFEKMKLERLDLKEDEYERLLEQKK 216
Query: 215 ---EGETLKDK------------EVSKELEA-PQELEIPKEETQEQDPIKEETQENKEEK 258
E L DK +++ LE+ E K E + E+ Q K E+
Sbjct: 217 LLSSKEKLNDKIALALDVLENTHKITHALESVGHSAEFLKSALLEAGALLEKEQA-KLEE 275
Query: 259 QEKTQDSPSAQELEAMQELVKEIQENSNGQEN----KEKTQESAEIPQ-----DKEIQEV 309
E+ ++L + ++K+ ++ +E K + EI KEI+ +
Sbjct: 276 CERLDIEKVLEKLGMLSGIIKDYGSIAHAKERLGHVKNELHNLKEIDHHCETYHKEIERL 335
Query: 310 VTEKTQ-AQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDV--EIPQSQDKEVQEL 366
TE + +E+ +++ AL +A +L + ++P V E P S +K Q+L
Sbjct: 336 KTECLKLCEEISGFRKEYLAGFNALLSAKAKDL----LLKSPSLVLEEAPMS-EKGAQKL 390
Query: 367 EIPKEETQENT 377
+ + +Q T
Sbjct: 391 VLHLQNSQLET 401
>ref|NP_223664.1| putative [Helicobacter pylori J99]
Length = 466
Score = 25.8 bits (55), Expect = 2.7
Identities = 18/68 (26%), Positives = 30/68 (43%)
Query: 145 GDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQE 204
G+LEA + + + + L LN+ E EKEE+K + V + K+ V +
Sbjct: 216 GNLEAAKKIQLLDSQMTLALLNNDYTAYEKLRAEKEELKRQIASNVYAKVKQLVVASQDR 275
Query: 205 EKKPKDDE 212
D+E
Sbjct: 276 AFSQMDNE 283
>ref|NP_223569.1| putative IRON-REGULATED OUTER MEMBRANE PROTEIN [Helicobacter pylori
J99]
Length = 815
Score = 25.8 bits (55), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (53%), Gaps = 1/35 (2%)
Query: 173 EVKEEEKEEVK-EEEKEEVKEEEKEEVKETPQEEK 206
E KEEEKEE K E K++ K + K T Q K
Sbjct: 25 EAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAK 59
Score = 25.4 bits (54), Expect = 3.5
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 189 EVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEV----------SKELEAPQELEI 236
E KEEEKEE K ++K+ T T + ++ SKELE Q +I
Sbjct: 25 EAKEEEKEEKKTERNKDKEKNAQHTLGKVTTQAAKIFNYNNQTTISSKELERRQANQI 82
>ref|NP_223350.1| putative HYDANTOIN UTILIZATION [Helicobacter pylori J99]
Length = 765
Score = 25.8 bits (55), Expect = 2.7
Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 19/126 (15%)
Query: 146 DLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEE 205
DL A++++ N +QLLP + + + K+ V ++ + K KE ++
Sbjct: 623 DLNAILEDL--NSKQLLPEYA-YKVYGAIVSQNKDGVWVGDEAKTKARRKEILENRKARS 679
Query: 206 KKPKDDETQEGETLKDKEVSKELE---------APQEL-------EIPKEETQEQDPIKE 249
K+ QE + +KE SK+++ +P+ L +PK T E+D +
Sbjct: 680 IPVKEWMEQERNAILEKEASKQVKHMYATSFDLSPRFLNDFKTFWNLPKNWTVEEDELGV 739
Query: 250 ETQENK 255
T +K
Sbjct: 740 FTYGSK 745
>ref|NP_223276.1| DNA LIGASE [Helicobacter pylori J99]
Length = 656
Score = 25.8 bits (55), Expect = 2.7
Identities = 24/87 (27%), Positives = 41/87 (46%), Gaps = 4/87 (4%)
Query: 391 TQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTE 450
T HY +++ EP+++ A+ +EL +A + N +P + V T+ NE +
Sbjct: 17 TLSHHYYNLD---EPIVSDAVYDELYQELKAYEEENPNRIQANSPTQKVGATATNEFSKN 73
Query: 451 TPQEKEES-DKTSSPLELRLNLQDLLK 476
+ S D + ELR LQ +LK
Sbjct: 74 PHLMRMWSLDDVFNQNELRAWLQRILK 100
>ref|NP_223188.1| cag island protein [Helicobacter pylori J99]
Length = 219
Score = 25.8 bits (55), Expect = 2.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 156 NNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEK 195
N + + E K+++++E+KE + + EK+++K E+
Sbjct: 98 NRKFYFIDLAKQNERKKDLEKEKKELLNKIEKQKIKHLER 137
>ref|NP_224164.1| putative ATP-DEPENDENT HELICASE [Helicobacter pylori J99]
Length = 946
Score = 25.4 bits (54), Expect = 3.5
Identities = 16/83 (19%), Positives = 34/83 (40%)
Query: 256 EEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQ 315
E+K E E+ ++ +EI+ + ++T + P+ ++ + T K Q
Sbjct: 252 EKKSEYRYFKKLKNEIPTLESECEEIENDLKRYYEAQETAIFKKFPKFIQLYDNATSKIQ 311
Query: 316 AQELEVPKEKTQESAEALQETQA 338
A + + K+K +E A
Sbjct: 312 ALDFDAIKDKVHVLLNGYEEMPA 334
>ref|NP_223907.1| NADH oxidoreductase I [Helicobacter pylori J99]
Length = 220
Score = 25.4 bits (54), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (52%), Gaps = 1/32 (3%)
Query: 426 PN-NENDTETPKESVTETSKNENNTETPQEKE 456
PN NE TP + V E SK E+ E+P E
Sbjct: 181 PNYNERMQATPLDYVQEPSKEESKEESPTSPE 212
>ref|NP_223758.1| EXCINUCLEASE ABC SUBUNIT B [Helicobacter pylori J99]
Length = 658
Score = 25.4 bits (54), Expect = 3.5
Identities = 13/44 (29%), Positives = 23/44 (51%)
Query: 183 KEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSK 226
K+EE ++ + V +EE K +DDE + + LK ++ K
Sbjct: 576 KQEEFNKIHNITPKTVTRALEEELKLRDDEIKIAKALKKDKMPK 619
>ref|NP_223618.1| putative [Helicobacter pylori J99]
Length = 340
Score = 25.4 bits (54), Expect = 3.5
Identities = 24/90 (26%), Positives = 40/90 (43%), Gaps = 8/90 (8%)
Query: 183 KEEEKEEVKEEEKEEVKETPQEEKKPKD------DETQEG--ETLKDKEVSKELEAPQEL 234
+ EEKE K E EVK P+ + K K +E E + LKD+ + QE+
Sbjct: 242 RNEEKERAKLENLIEVKVIPEVQYKLKKVLPGLFNECLENSLKGLKDRCELEITHKKQEI 301
Query: 235 EIPKEETQEQDPIKEETQENKEEKQEKTQD 264
+ ++E ++ E+ ++ E K D
Sbjct: 302 ALAQKEKEKHLNDLEDQKQILENKINALSD 331
>ref|NP_223252.1| putative [Helicobacter pylori J99]
Length = 978
Score = 25.4 bits (54), Expect = 3.5
Identities = 14/54 (25%), Positives = 25/54 (45%)
Query: 182 VKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELE 235
++E E EV + + + E+K KD G+TLK +S + P ++
Sbjct: 493 IQEGENSEVFRRKIIDTIKAQSEDKFTKDVFYATGDTLKSLSLSFDFSNPDHIQ 546
>ref|NP_223987.1| CARBOXYL-TERMINAL PROTEASE [Helicobacter pylori J99]
Length = 459
Score = 25.0 bits (53), Expect = 4.6
Identities = 21/89 (23%), Positives = 42/89 (46%), Gaps = 9/89 (10%)
Query: 155 PNNEEQLL---PTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDD 211
P NE + L E+E K ++K + +E ++ K EE++EV TP K +D
Sbjct: 377 PENENKFSLKEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEKEV--TP----KMIND 430
Query: 212 ETQEGETLKDKEVSKELEAPQELEIPKEE 240
+ Q + + ++ + ++PK++
Sbjct: 431 DIQLKTAIDSLKTWSIVDEKMDEKVPKKK 459
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/36 (27%), Positives = 21/36 (57%)
Query: 226 KELEAPQELEIPKEETQEQDPIKEETQENKEEKQEK 261
KE + LE ++ ++ PI +E ++K+ ++EK
Sbjct: 386 KEADLKHHLEQELKKLDDKTPISKEADKDKKSEEEK 421
>ref|NP_223854.1| POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE [Helicobacter pylori J99]
Length = 688
Score = 25.0 bits (53), Expect = 4.6
Identities = 22/85 (25%), Positives = 37/85 (42%), Gaps = 5/85 (5%)
Query: 409 KAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENNTETPQEKEESDKTSSPLELR 468
+++G++L L E P E ++S+ ET TP + E K + L
Sbjct: 188 RSLGQKLNALEE-----PLMLEALELAQKSLKETCALYEEAFTPYQNELLFKEGEGIVLN 242
Query: 469 LNLQDLLKSLNQESLKSLLENKTLS 493
L DLLK+ + + +E+ LS
Sbjct: 243 ERLLDLLKNQYFDEIIKGIESSALS 267
>ref|NP_223838.1| DNA-DIRECTED RNA POLYMERASE, BETA SUBUNIT [Helicobacter pylori J99]
Length = 2890
Score = 25.0 bits (53), Expect = 4.6
Identities = 18/57 (31%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Query: 157 NEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKE----EVKEEEKEEVKETPQEEKKPK 209
NEEQ E++ V + E +K+ +E + + KEEVK+T + KK K
Sbjct: 1549 NEEQYQNISRRYEDRGFVAQMGGEAIKDLLEEIDLITLLQSLKEEVKDTNSDAKKKK 1605
>ref|NP_223575.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 366
Score = 25.0 bits (53), Expect = 4.6
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 9 NPMITKLLESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQVDWLELKE 68
NP + + LE + + + P+E + + L + ++Q +L + + ++ + L +
Sbjct: 123 NPKLVQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQIS--NSLNALD 180
Query: 69 TISQNKNSVCMYKKG 83
S +KN MY G
Sbjct: 181 PSSYSKNVSSMYGVG 195
>ref|NP_223462.1| HOLO-ACYL CARRIER PROTEIN SYNTHASE [Helicobacter pylori J99]
Length = 119
Score = 25.0 bits (53), Expect = 4.6
Identities = 10/50 (20%), Positives = 27/50 (54%)
Query: 379 TPQDVETPQEKETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNN 428
+P ++ ++K + + ++++ + +G+EL FL+ ++K P N
Sbjct: 29 SPSEIVLCKDKSSSIAGFFALKEACSKALQVGIGKELSFLDMRISKSPKN 78
>ref|NP_223375.1| putative [Helicobacter pylori J99]
Length = 140
Score = 25.0 bits (53), Expect = 4.6
Identities = 17/71 (23%), Positives = 34/71 (46%)
Query: 129 PTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKE 188
P+ E ++ + + L L A ++ + N + EE ++ +EEV++E +E
Sbjct: 39 PSNEAIDYRMEVSKRLKALSAEDAKKFRANFSRIARKNLSKMSEEDFKKMREEVRKELEE 98
Query: 189 EVKEEEKEEVK 199
+ K EE+K
Sbjct: 99 KTKGLSAEEIK 109
>ref|NP_223147.1| putative Outer membrane protein [Helicobacter pylori J99]
Length = 371
Score = 25.0 bits (53), Expect = 4.6
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 9 NPMITKLLESVSKKLELPIENFNHYQELSARLKENQEWLLIADDECLEKLDQVDWLELKE 68
NP + + LE + + + P+E + + L + ++Q +L + + ++ + L +
Sbjct: 128 NPKLAQALEKMQEPITNPLELVENLKNLELQFSQSQNSMLSSLSSQIAQIS--NSLNALD 185
Query: 69 TISQNKNSVCMYKKG 83
S +KN MY G
Sbjct: 186 PSSYSKNVSSMYGVG 200
>ref|NP_223044.1| FLAGELLAR M-RING PROTEIN [Helicobacter pylori J99]
Length = 567
Score = 25.0 bits (53), Expect = 4.6
Identities = 17/69 (24%), Positives = 34/69 (48%), Gaps = 4/69 (5%)
Query: 132 EVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEKEEVK 191
E ++ DEL LGDL V+++ L + +++E + E+ E+ +E +E+
Sbjct: 494 EEMDEEEDELNKLGDLRKKVEDQLG----LNASFSEEEVRYEIILEKIRGTLKERPDEIA 549
Query: 192 EEEKEEVKE 200
K +K+
Sbjct: 550 TLFKLLIKD 558
>ref|NP_222823.1| 24kDa chaperone [Helicobacter pylori J99]
Length = 191
Score = 25.0 bits (53), Expect = 4.6
Identities = 12/47 (25%), Positives = 24/47 (50%)
Query: 165 LNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDD 211
+ D+ +E KE ++ KE++ EE +E ++E + K+D
Sbjct: 1 MKDEHNQEHDHLSPKEPESYQKAYACKEQQGEEKQEASEKEGEIKED 47
>ref|NP_222733.1| putative [Helicobacter pylori J99]
Length = 350
Score = 25.0 bits (53), Expect = 4.6
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 266 PSAQELEAMQE---LVKEIQENSNGQENKEKTQESAEIPQDKEIQEVVTEKTQAQELE 320
P +Q EA+ + LV+E+ E + ++TQ S E PQ + E++ A+ LE
Sbjct: 121 PKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQ--FLDELLLRPMSAKLLE 176
>ref|NP_224209.1| putative O-SIALOGLYCOPROTEIN ENDOPEPTIDASE [Helicobacter pylori
J99]
Length = 340
Score = 24.6 bits (52), Expect = 6.0
Identities = 26/102 (25%), Positives = 44/102 (42%), Gaps = 7/102 (6%)
Query: 389 KETQEDHYESIEDIPEPVMAKAMGEELPFLNEAVAKIPNNENDTETPKESVTETSKNENN 448
K +QE H+ S + + ++ E LP L E V KI N++ ++ ++T N
Sbjct: 29 KISQEKHHSSYGGVVPEIASRLHAENLPLLLERV-KISLNKDFSKIKAIAIT------NQ 81
Query: 449 TETPQEKEESDKTSSPLELRLNLQDLLKSLNQESLKSLLENK 490
E + L L LNL +L+ + + SL N+
Sbjct: 82 PGLSVTLIEGLMMAKALSLSLNLPLILEDHLRGHVYSLFINE 123
>ref|NP_224090.1| putative [Helicobacter pylori J99]
Length = 841
Score = 24.6 bits (52), Expect = 6.0
Identities = 29/147 (19%), Positives = 62/147 (41%), Gaps = 15/147 (10%)
Query: 242 QEQDPIKEETQENKEEKQE--KTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAE 299
+EQ+ ++E+ ENK EK+ K S +A+++ + +I+ + + ++
Sbjct: 4 EEQNSLEEKGGENKNEKETPLKGIHSKIPSLKQALEQTISKIKSSKEFFKQLLHNKKKLY 63
Query: 300 IPQDKEIQEVVTEKTQAQELEVPKEKTQESAEALQETQAHELEKQEIAETPQDVEIPQSQ 359
I + + + L KE Q S + T + ETP D +++
Sbjct: 64 IALGILLSLIALIVALSLLLGHKKENKQTSLQTNTATTNN--------ETPNDTNNAEAE 115
Query: 360 DKEVQELEIP----KEETQENTETPQD 382
+++ L++P K+ + N E+ D
Sbjct: 116 G-QIENLDLPDLIGKDSLKRNDESQVD 141
>ref|NP_223782.1| ATP synthase B' [Helicobacter pylori J99]
Length = 144
Score = 24.6 bits (52), Expect = 6.0
Identities = 21/101 (20%), Positives = 44/101 (42%), Gaps = 7/101 (6%)
Query: 128 DPTQEVLETNWDELENLGDLEALVQEEPNNEEQLLPTLNDQEEKEEVKEEEKEEVKEEEK 187
D ++ N +E +E L++E ++L E ++ E +K++E
Sbjct: 45 DSLAKIKTDNTQSVEIGHQIETLLKEAAEKRREMLA-----EAIQKATESYDAVIKQKEN 99
Query: 188 EEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKEL 228
E +E E + Q EK+ ++ Q T+ + E++K +
Sbjct: 100 E--LNQEFEAFAKQLQNEKQILKEQLQAQMTVFEDELNKRV 138
>ref|NP_223463.1| putative FLAGELLAR BIOSYNTHESIS PROTEIN [Helicobacter pylori J99]
Length = 183
Score = 24.6 bits (52), Expect = 6.0
Identities = 28/122 (22%), Positives = 51/122 (40%), Gaps = 15/122 (12%)
Query: 187 KEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKEL---EAPQELEIPKEETQE 243
KEE KE + +E K+ E +EG ++ V L +AP + + + +
Sbjct: 45 KEESKENASKNTQEVQANPMANKNQEAKEGSNIQQYLVLGPLYAIDAPFAVNLVSQNGRR 104
Query: 244 --QDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQE---NKEKTQESA 298
+ I E K + K +D+ A+++ + EI + + +E NK K +
Sbjct: 105 YLKASISLELSNEKLLNEVKVKDT-------AIKDTIIEILSSKSVEEVVTNKGKNKLKD 157
Query: 299 EI 300
EI
Sbjct: 158 EI 159
>ref|NP_223308.1| LYTIC MUREIN TRANSGLYCOSYLASE [Helicobacter pylori J99]
Length = 560
Score = 24.6 bits (52), Expect = 6.0
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 291 KEKTQESAEIPQDKEIQEVVTEKTQAQE-----LEVPKEKTQESAEALQETQAHELEKQE 345
K+ ++ A I +D + +++K + E E+ + K +A+QE +K
Sbjct: 24 KDLEKKPAGIVRDYYLWRYISDKKTSLENAKKAYELTQNKNSALQKAMQEKGVENSDKSP 83
Query: 346 IAETPQDVEIPQ 357
A+ P+D+ Q
Sbjct: 84 DAKMPEDIYCKQ 95
>ref|NP_223113.1| FLAGELLAR MOTOR SWITCH PROTEIN [Helicobacter pylori J99]
Length = 285
Score = 24.6 bits (52), Expect = 6.0
Identities = 29/134 (21%), Positives = 53/134 (38%), Gaps = 40/134 (29%)
Query: 139 DELENLGDLEALVQEEPN---------NEEQLLPTLNDQEEKEEVKEE------------ 177
+E++N DL+A + N ++LLP LN E+ +E
Sbjct: 85 EEMDN-DDLDAFKEMASNIFGAIATSLKSQELLPKLNFTTTNAEIAKELPKKEDYAKAMV 143
Query: 178 ---EKEEVKEEEK------------EEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDK 222
+ E +KE + E+ +EEKEE ++ EE K D E ++ +
Sbjct: 144 FSFKMEAIKESQIVLLITSAFEGQFEKTHKEEKEETTKSATEETKTHDASL---ENIEIR 200
Query: 223 EVSKELEAPQELEI 236
+S L+ +++
Sbjct: 201 NISMLLDVKLNVKV 214
>ref|NP_222827.1| putative [Helicobacter pylori J99]
Length = 627
Score = 24.6 bits (52), Expect = 6.0
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 161 LLPTLNDQEEKEEVKEEEKEEVKEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLK 220
+ PT ++Q + ++ +++ EE+ + E+ + E+ +K EK K E + E L
Sbjct: 476 IYPTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAFLKVAEFLEKVEKLHEKNKLEELD 535
Query: 221 DKE---VSKELEAPQEL 234
+E +S E++ +EL
Sbjct: 536 FEELENLSAEIDNVKEL 552
Score = 24.6 bits (52), Expect = 6.0
Identities = 27/137 (19%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 183 KEEEKEEVKEEEKEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEET- 241
KE +EV E+ + + P P E + + K+ + ++ E + EE
Sbjct: 453 KEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIAKKKCEEIIKYANEKKTQVEEAF 512
Query: 242 QEQDPIKEETQENKEEKQEKTQDSPSAQELEAMQELVKEIQENSNGQENKEKTQESAEIP 301
+ E+ ++ E+ + + D + L A + VKE+ ++ +S
Sbjct: 513 LKVAEFLEKVEKLHEKNKLEELDFEELENLSAEIDNVKELFDDKRFNSYFMDAIQSYIFH 572
Query: 302 QDKEIQEVVTEKTQAQE 318
Q+ I E+V +KT ++
Sbjct: 573 QELHIAEIVCKKTSNED 589
>ref|NP_223880.1| ALANYL-TRNA SYNTHETASE [Helicobacter pylori J99]
Length = 847
Score = 24.3 bits (51), Expect = 7.9
Identities = 20/75 (26%), Positives = 33/75 (43%), Gaps = 11/75 (14%)
Query: 195 KEEVKETPQEEKKPKDDETQEGETLKDKEVSKELEAPQELEIPKEETQ---------EQD 245
KEE KE + K+++ G + V +AP +++P E+ EQ
Sbjct: 698 KEENKELKNAKTLLKNNDVIAGINKLKESVKNSQKAPVSMDLPVEKIHGVNLVVGVVEQG 757
Query: 246 PIKE--ETQENKEEK 258
IKE + ++K EK
Sbjct: 758 DIKEMIDRLKSKHEK 772
>ref|NP_223411.1| putative [Helicobacter pylori J99]
Length = 48
Score = 24.3 bits (51), Expect = 7.9
Identities = 10/21 (47%), Positives = 16/21 (75%)
Query: 176 EEEKEEVKEEEKEEVKEEEKE 196
E+E E+ +EEE E +EE++E
Sbjct: 5 EDELEDFEEEELEGFEEEDEE 25
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.296 0.120 0.305
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,986
Number of Sequences: 1491
Number of extensions: 33968
Number of successful extensions: 1051
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 104
Number of HSP's gapped (non-prelim): 343
length of query: 505
length of database: 494,079
effective HSP length: 82
effective length of query: 423
effective length of database: 371,817
effective search space: 157278591
effective search space used: 157278591
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.9 bits)
S2: 51 (24.3 bits)