BLASTP 2.2.1 [Apr-13-2001]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15644951|ref|NP_207121.1| membrane bound endonuclease
(nuc) [Helicobacter pylori 26695]
(180 letters)
Database: NC_000921.faa
1491 sequences; 494,079 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori... 345 3e-97
ref|NP_222897.1| putative cardiolipin synthase [Helicobacte... 43 6e-06
ref|NP_224110.1| putative [Helicobacter pylori J99] 32 0.010
ref|NP_222988.1| putative [Helicobacter pylori J99] 29 0.065
ref|NP_223859.1| putative ABC transporter, ATP-binding prot... 27 0.32
ref|NP_224000.1| putative histidine kinase sensor protein [... 27 0.42
ref|NP_223405.1| putative [Helicobacter pylori J99] 25 1.6
ref|NP_223190.1| cag island protein [Helicobacter pylori J99] 25 1.6
ref|NP_223848.1| putative [Helicobacter pylori J99] 23 6.1
ref|NP_223232.1| putative Inner membrane protein [Helicobac... 23 6.1
ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99] 22 7.9
ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PR... 22 7.9
ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (... 22 7.9
>ref|NP_223026.1| putative ENDONUCLEASE [Helicobacter pylori J99]
Length = 180
Score = 345 bits (886), Expect = 3e-97
Identities = 172/180 (95%), Positives = 177/180 (97%)
Query: 1 MLNKFKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSFT 60
MLNKFKKIVGV VLVGCLGVLQAKNSLFVLPYEQ+DALNSL+SGIS+ARE+VKIAIYSFT
Sbjct: 1 MLNKFKKIVGVGVLVGCLGVLQAKNSLFVLPYEQRDALNSLISGISSARENVKIAIYSFT 60
Query: 61 HRDIARAIKSVASRGIKVQIIYDYESNHHNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYY 120
HRDIARAIKSVASRGIKVQIIYDYESNH+NKQSTIGYLDKYPNTKVCLLKGLKAKNGNYY
Sbjct: 61 HRDIARAIKSVASRGIKVQIIYDYESNHNNKQSTIGYLDKYPNTKVCLLKGLKAKNGNYY 120
Query: 121 GIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLGSCVGF 180
GIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKML CVGF
Sbjct: 121 GIMHQKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDTETILKAKSYYQKMLEGCVGF 180
>ref|NP_222897.1| putative cardiolipin synthase [Helicobacter pylori J99]
Length = 502
Score = 42.7 bits (99), Expect = 6e-06
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 17/145 (11%)
Query: 24 KNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSFTH----RDIARAIKSVASRGIKVQ 79
K+S +L + DAL V I +++S+ + Y + + + IA+ + + A+RG+KV+
Sbjct: 52 KHSAAILLEDGFDALLHRVGLIRMSQKSIDMQTYIYKNDLSSQVIAKELLNAANRGVKVR 111
Query: 80 IIYDYESNHHNKQSTIGYLDKYPNTKVCLLKGLKAKN---------GNYYGI---MHQKV 127
I+ D ++ + S I L+ + N +V + +N +Y I MH K+
Sbjct: 112 ILLD-DNGLDSDFSDIMLLNFHKNIEVKIFNPYYIRNKGLRYFEMLADYERIKKRMHNKL 170
Query: 128 AIIDDKIVFLGSANWSKNAFENNYE 152
I+D+ V +G N N F+N+ +
Sbjct: 171 FIVDNFAVIIGGRNIGDNYFDNDLD 195
Score = 29.6 bits (65), Expect = 0.050
Identities = 29/124 (23%), Positives = 56/124 (44%), Gaps = 14/124 (11%)
Query: 45 ISNARESVKIAI-YSFTHRDIARAIKSVASRGIKVQIIYDYESNHHNKQSTIGYLDKYPN 103
+ NA++SV IA Y + I + K+ S+GI++ I+ + S+ + G ++Y N
Sbjct: 311 LKNAKDSVFIASSYFIPGKKIMKIFKNQISKGIELNILTNSLSST-DAIVVYGAWERYRN 369
Query: 104 TKVCLLKGLKAKNGNYYG-----------IMHQKVAIIDDKIVFLGSANWS-KNAFENNY 151
V + + +++ +H K + DD + LGS N ++A+ N
Sbjct: 370 KLVRMGANVYEIRNDFFNRQIKGRFSTKHSLHGKTIVFDDALTLLGSFNIDPRSAYINTE 429
Query: 152 EVLL 155
+L
Sbjct: 430 SAVL 433
>ref|NP_224110.1| putative [Helicobacter pylori J99]
Length = 306
Score = 32.0 bits (71), Expect = 0.010
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 44 GISNARES-VKIAIYSFTHRDIARAIK-SVASRGIKVQIIYDYESNHHNKQSTIGYLDKY 101
G+ N+ ++ + +A ++ +I + + + +G + +II + + +S +LD
Sbjct: 21 GLRNSLDTHIAVAFLKYSGVEIIQDVLINFLEKGAEFEIIVGLDFKTTDSKSIRFFLDLN 80
Query: 102 PNTKVCLLKGLKAKNGNYYGIM-HQKVAIID---DKIVFLGSANWSKNAFENNYEV 153
K K N I+ H K+ + D +K +GSAN +K ENN+EV
Sbjct: 81 KTYKKLKFYCYGDKENNKTDIVFHPKIYMFDNGKEKTSIIGSANLTKGGLENNFEV 136
>ref|NP_222988.1| putative [Helicobacter pylori J99]
Length = 478
Score = 29.3 bits (64), Expect = 0.065
Identities = 15/63 (23%), Positives = 32/63 (49%), Gaps = 1/63 (1%)
Query: 43 SGISNARESVKIAIYSFT-HRDIARAIKSVASRGIKVQIIYDYESNHHNKQSTIGYLDKY 101
SG+S +S+ + S + + D++ I V+ + ++YD++ N H K + + +
Sbjct: 348 SGLSKTTQSIVVLNESLSINEDMSSVIFDVSMQMDLGLLLYDFDPNKHYKNEIVNHYENL 407
Query: 102 PNT 104
NT
Sbjct: 408 ANT 410
>ref|NP_223859.1| putative ABC transporter, ATP-binding protein [Helicobacter pylori
J99]
Length = 228
Score = 26.9 bits (58), Expect = 0.32
Identities = 21/56 (37%), Positives = 27/56 (47%), Gaps = 4/56 (7%)
Query: 91 KQSTIGYLDKYPNTKVCLLKGLKAKNGNYYG---IMHQKVAIIDDK-IVFLGSANW 142
KQ IG L K LLK L N NY G I++QK+ I K + FL ++
Sbjct: 27 KQQFIGLLGPNGAGKTTLLKILAGLNLNYQGEVKILNQKIGIETKKSVAFLSDGDF 82
>ref|NP_224000.1| putative histidine kinase sensor protein [Helicobacter pylori J99]
Length = 344
Score = 26.6 bits (57), Expect = 0.42
Identities = 22/83 (26%), Positives = 40/83 (47%), Gaps = 2/83 (2%)
Query: 5 FKKIVGVSVLVGCLGVLQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSFTHRDI 64
F ++GVSV +G L + +N + + + K+ + L + +S S+K + HR I
Sbjct: 113 FLCVIGVSVFLGRLFLKPIRNEIIRIDHFLKNTTHELNTPMSALVLSLKTLEDNQQHRRI 172
Query: 65 ARAIK--SVASRGIKVQIIYDYE 85
AI+ S R + ++ D E
Sbjct: 173 KIAIQRMSFLYRSLSYLVMQDIE 195
>ref|NP_223405.1| putative [Helicobacter pylori J99]
Length = 400
Score = 24.6 bits (52), Expect = 1.6
Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 21 LQAKNSLFVLPYEQKDALNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRG---IK 77
+Q K +L +E+K+ LNS +S + A S ++ + +A +R ++
Sbjct: 27 IQHKETLLKKTHEEKNQLNSRLSSLGEAIRSKELQKVEIERQMVALKKSLEKNRNESLVQ 86
Query: 78 VQIIYDYESNHHNKQSTIGYLDK 100
+++ +Y + + Q +L K
Sbjct: 87 EKVLTNYRKSLDHLQKQRSFLQK 109
>ref|NP_223190.1| cag island protein [Helicobacter pylori J99]
Length = 169
Score = 24.6 bits (52), Expect = 1.6
Identities = 33/130 (25%), Positives = 55/130 (41%), Gaps = 28/130 (21%)
Query: 5 FKKIVGVSVLVGCLGVLQAKNSLFVLPYE------QKDALNSLVS-------------GI 45
F+K +G+++L+ LG K S+ YE QK N +V G+
Sbjct: 2 FEKWIGLTLLLSSLGYPCQKVSISFKQYENLIHIHQKGCNNEVVCRTLISIALLESSLGL 61
Query: 46 SNARE-SVKIAIYSFTHRDIARAIK---SVASRGIKVQIIYDYE-----SNHHNKQSTIG 96
+N RE S+K YS H + A K + + +K +++ D + K++
Sbjct: 62 NNKREKSLKDTSYSMFHITLNTAKKFYPTYSKTLLKTKLLNDVGFAIQLAKQILKENFDY 121
Query: 97 YLDKYPNTKV 106
Y K+PN V
Sbjct: 122 YHQKHPNKSV 131
>ref|NP_223848.1| putative [Helicobacter pylori J99]
Length = 222
Score = 22.7 bits (47), Expect = 6.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 7/37 (18%)
Query: 81 IYDYESNHHNKQSTIGYLDKYPNTKVCLLKGLKAKNG 117
+ DYES NK + +GY N+KV LK L ++G
Sbjct: 173 VNDYESAKANKVAFLGY-----NSKV--LKNLVGQDG 202
>ref|NP_223232.1| putative Inner membrane protein [Helicobacter pylori J99]
Length = 349
Score = 22.7 bits (47), Expect = 6.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 38 LNSLVSGISNARESVKIAIYSFTHRDIARAIKSVASRGIKVQIIYD 83
L SLV + A + IAIY H + AI V + + ++ D
Sbjct: 230 LASLVPAVGGALIWIPIAIYELYHGHVNEAIFIVLYSILLIGVLID 275
>ref|NP_223648.1| topoisomerase I [Helicobacter pylori J99]
Length = 686
Score = 22.3 bits (46), Expect = 7.9
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 85 ESNHHNKQSTIGYLDKYPNTKVCLLKGLK 113
E ++K+ + + + K CLLK LK
Sbjct: 219 EIKFNDKEEALKLFESLKDNKACLLKDLK 247
>ref|NP_223451.1| NEURAMINYLLACTOSE-BINDING HEMAGGLUTININ PRECURSOR [Helicobacter
pylori J99]
Length = 260
Score = 22.3 bits (46), Expect = 7.9
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 125 QKVAIIDDKIVFLGSANWSKNAFENNYEVLLKTDDT---ETILKAKSY 169
+KV +D+KI+ L A + YE K T E IL+ + Y
Sbjct: 49 EKVQALDEKILLLRPAFQYSDNIAKEYENKFKNQTTLKVEEILQNQGY 96
>ref|NP_222766.1| putative TYPE II DNA MODIFICATION ENZYME (METHYLTRANSFERASE)
[Helicobacter pylori J99]
Length = 185
Score = 22.3 bits (46), Expect = 7.9
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 108 LLKGLKAKNGNYYGIMHQKVAII-----DDKIVFLGSAN-WSKN-AFENNYEVLLKTDDT 160
LL + KNG YG+ KV+ + K L + N SK+ +++N E + K T
Sbjct: 18 LLSRFQIKNGCIYGVCSYKVSKFTPGYEESKARVLNALNILSKHQIWQSNQESVTKVKGT 77
Query: 161 -------ETILKAKSYYQKML 174
+ L S+Y+K+L
Sbjct: 78 FVFILENDLHLDENSFYKKLL 98
Database: NC_000921.faa
Posted date: Dec 10, 2001 4:36 PM
Number of letters in database: 494,079
Number of sequences in database: 1491
Lambda K H
0.319 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 201,581
Number of Sequences: 1491
Number of extensions: 9442
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 14
length of query: 180
length of database: 494,079
effective HSP length: 72
effective length of query: 108
effective length of database: 386,727
effective search space: 41766516
effective search space used: 41766516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)